Wall clock time and date at job start Sat Apr 11 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81401 * 103.00248 * 2 1 4 4 H 1.08996 * 110.01537 * 306.39327 * 3 2 1 5 5 C 1.53875 * 110.07340 * 67.80609 * 3 2 1 6 6 C 1.54265 * 106.59796 * 119.30638 * 5 3 2 7 7 C 1.55239 * 104.23086 * 23.61538 * 6 5 3 8 8 H 1.09000 * 110.76843 * 80.30781 * 7 6 5 9 9 N 1.46503 * 110.90017 * 203.78932 * 7 6 5 10 10 S 1.65595 * 119.99985 * 258.21598 * 9 7 6 11 11 O 1.42100 * 106.39976 * 178.54143 * 10 9 7 12 12 O 1.42096 * 106.40266 * 311.45550 * 10 9 7 13 13 C 1.76195 * 107.22150 * 64.99783 * 10 9 7 14 14 C 1.38656 * 119.87329 * 89.99396 * 13 10 9 15 15 C 1.38615 * 120.49841 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.24796 * 0.02562 * 15 14 13 17 17 C 1.40691 * 119.74770 * 359.97438 * 16 15 14 18 18 C 1.41394 * 120.24855 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00410 * 155.18715 * 18 17 16 20 20 C 1.39950 * 119.99594 * 335.18835 * 18 17 16 21 21 N 1.30819 * 120.00233 * 342.33169 * 20 18 17 22 22 Si 1.86801 * 119.99617 * 162.32459 * 20 18 17 23 23 H 1.48496 * 109.47514 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47022 * 120.00240 * 22 20 18 25 25 H 1.48505 * 109.46947 * 239.99830 * 22 20 18 26 26 C 1.37590 * 119.87414 * 269.72619 * 13 10 9 27 27 C 1.54270 * 110.03255 * 185.00033 * 3 2 1 28 28 H 1.09003 * 109.47254 * 299.99726 * 1 2 3 29 29 H 1.08997 * 109.47430 * 59.99848 * 1 2 3 30 30 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08995 * 110.03395 * 238.59206 * 5 3 2 32 32 H 1.09003 * 110.03052 * 0.02803 * 5 3 2 33 33 H 1.09002 * 110.48637 * 142.28628 * 6 5 3 34 34 H 1.08998 * 110.49261 * 264.93541 * 6 5 3 35 35 H 0.96999 * 119.99532 * 78.21018 * 9 7 6 36 36 H 1.07993 * 119.75286 * 0.02562 * 14 13 10 37 37 H 1.08002 * 119.87472 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.12320 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00200 * 179.97438 * 21 20 18 40 40 H 1.07996 * 120.12941 * 359.97438 * 26 13 10 41 41 H 1.08997 * 110.48634 * 335.73228 * 27 3 2 42 42 H 1.08999 * 110.48336 * 98.24887 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7139 2.2677 -0.8244 5 6 1.8089 2.4049 1.3382 6 6 3.0980 2.9601 1.9784 7 6 4.0579 3.1765 0.7777 8 1 3.8274 4.1086 0.2618 9 7 5.4557 3.1557 1.2157 10 16 6.2867 4.5761 1.4004 11 8 7.5843 4.2248 1.8609 12 8 6.0596 5.3305 0.2178 13 6 5.5164 5.4643 2.7128 14 6 5.9479 5.2804 4.0176 15 6 5.3515 5.9728 5.0599 16 6 4.3222 6.8515 4.8093 17 6 3.8761 7.0460 3.4892 18 6 2.8199 7.9465 3.2197 19 1 2.7342 8.4021 2.2442 20 6 1.8854 8.2476 4.2170 21 7 1.7672 7.4666 5.2599 22 14 0.8071 9.7647 4.0592 23 1 1.1337 10.4751 2.7968 24 1 -0.6209 9.3574 4.0422 25 1 1.0507 10.6673 5.2131 26 6 4.4928 6.3417 2.4383 27 6 3.7478 1.9576 -0.1263 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.1004 3.2145 1.1632 32 1 1.3634 1.6521 1.9885 33 1 2.8974 3.9061 2.4813 34 1 3.5188 2.2372 2.6773 35 1 5.8944 2.3099 1.3976 36 1 6.7552 4.5933 4.2234 37 1 5.6959 5.8222 6.0724 38 1 3.8587 7.3896 5.6230 39 1 1.1197 7.6754 5.9513 40 1 4.1615 6.4869 1.4207 41 1 4.2734 1.0728 0.2327 42 1 4.0214 2.1697 -1.1599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795118996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:59 Heat of formation + Delta-G solvation = -74.233647 kcal Electronic energy + Delta-G solvation = -25602.319145 eV Core-core repulsion = 21992.258765 eV Total energy + Delta-G solvation = -3610.060380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.44571 -37.65782 -36.64666 -35.32143 -33.87983 -33.45698 -30.10857 -29.84274 -29.27065 -28.73044 -26.98153 -25.51201 -21.92643 -21.14275 -20.82749 -20.55345 -19.21526 -18.05400 -17.07160 -16.85658 -15.96581 -15.78579 -15.60083 -15.29630 -14.72634 -14.63438 -13.97739 -13.71006 -13.63634 -13.50376 -13.39162 -13.31911 -12.66710 -12.61367 -12.03753 -11.95619 -11.89375 -11.64345 -11.56294 -11.43241 -11.39486 -11.24477 -11.18120 -11.04868 -11.01398 -10.93535 -10.64017 -10.59149 -9.89102 -9.80179 -9.66653 -9.39241 -9.13952 -8.06443 -7.81763 -7.73164 -6.96455 -4.57093 1.00266 1.55139 2.16812 2.41060 2.59426 2.97563 3.01377 3.04157 3.51988 3.79757 4.21995 4.37359 4.42144 4.52277 4.83829 4.94531 4.96705 4.98485 5.25537 5.31656 5.36102 5.39096 5.43319 5.51187 5.56915 5.70826 5.77930 6.00544 6.02910 6.14575 6.16549 6.43632 6.47190 6.62059 6.72711 6.82080 7.00202 7.16526 7.22639 7.35449 7.70279 7.77770 7.90911 8.37191 8.63833 8.68572 9.98950 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009221 B = 0.004246 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.850323 B = 6593.604197 C = 8700.049992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.054 4.054 4 H 0.092 0.908 5 C -0.119 4.119 6 C -0.139 4.139 7 C 0.152 3.848 8 H 0.105 0.895 9 N -1.112 6.112 10 S 2.687 3.313 11 O -0.976 6.976 12 O -0.972 6.972 13 C -0.629 4.629 14 C -0.144 4.144 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.794 5.794 22 Si 0.908 3.092 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.271 1.271 26 C -0.126 4.126 27 C -0.104 4.104 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.413 0.587 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.282 0.718 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 -10.521 -5.881 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.037 6.037 3 C -0.183 4.183 4 H 0.110 0.890 5 C -0.159 4.159 6 C -0.179 4.179 7 C 0.044 3.956 8 H 0.123 0.877 9 N -0.867 5.867 10 S 2.783 3.217 11 O -0.967 6.967 12 O -0.962 6.962 13 C -0.721 4.721 14 C -0.165 4.165 15 C -0.140 4.140 16 C -0.137 4.137 17 C 0.090 3.910 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.732 3.268 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.148 4.148 27 C -0.144 4.144 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.247 0.753 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.258 -11.028 -6.268 12.884 hybrid contribution -1.869 1.368 0.813 2.455 sum -4.128 -9.660 -5.455 11.837 Atomic orbital electron populations 1.23375 0.94454 1.06164 1.05076 1.86816 1.07246 1.11781 1.97886 1.23792 0.99952 0.93028 1.01570 0.88973 1.22504 0.98709 1.00421 0.94256 1.22916 0.94184 1.03001 0.97759 1.21782 0.79950 0.99390 0.94520 0.87679 1.55554 1.22328 1.24414 1.84435 1.01692 0.72908 0.72614 0.74445 1.93523 1.37007 1.83392 1.82775 1.93528 1.85946 1.70223 1.46545 1.29705 1.13504 1.16073 1.12838 1.20070 1.01584 1.03700 0.91125 1.20812 0.97614 0.98594 0.97026 1.21633 0.95366 0.98650 0.98002 1.17662 0.91552 0.90695 0.91140 1.19638 1.07890 1.22344 0.99123 0.89924 1.25909 0.97235 0.96789 0.94233 1.69780 1.30191 1.33364 1.08576 0.86248 0.79248 0.81449 0.79811 1.18211 1.19896 1.19598 1.20749 0.97442 0.97765 0.98821 1.22448 0.92304 0.98637 1.01040 0.90316 0.90604 0.88401 0.90768 0.90587 0.89279 0.90588 0.75324 0.87644 0.88440 0.85842 0.90657 0.87163 0.89901 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.64 101.05 1.08 0.10 16 2 S -0.26 -2.80 21.34 -107.50 -2.29 -5.09 16 3 C -0.05 -0.57 3.41 -25.61 -0.09 -0.66 16 4 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.12 -1.37 6.37 -25.61 -0.16 -1.53 16 6 C -0.14 -1.88 6.53 -24.88 -0.16 -2.05 16 7 C 0.15 2.02 3.58 -65.74 -0.24 1.78 16 8 H 0.11 1.48 7.60 -51.93 -0.39 1.08 16 9 N -1.11 -15.51 5.60 -3.04 -0.02 -15.53 16 10 S 2.69 48.93 5.71 -107.50 -0.61 48.31 16 11 O -0.98 -19.60 17.27 -57.18 -0.99 -20.58 16 12 O -0.97 -19.85 16.66 -57.18 -0.95 -20.81 16 13 C -0.63 -13.15 5.94 -39.66 -0.24 -13.39 16 14 C -0.14 -3.03 9.53 -39.29 -0.37 -3.41 16 15 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 16 C -0.12 -2.81 8.70 -38.88 -0.34 -3.15 16 17 C 0.09 2.29 5.57 -106.82 -0.60 1.70 16 18 C -0.46 -11.34 9.05 -37.74 -0.34 -11.68 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 20 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 21 N -0.79 -18.91 10.97 55.55 0.61 -18.30 16 22 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 C -0.13 -2.87 9.26 -38.87 -0.36 -3.23 16 27 C -0.10 -1.14 6.02 -25.07 -0.15 -1.29 16 28 H 0.08 0.61 7.92 -51.92 -0.41 0.20 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.85 7.38 -51.93 -0.38 0.47 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.41 4.73 8.82 -34.47 -0.30 4.43 16 36 H 0.11 2.04 7.60 -52.49 -0.40 1.64 16 37 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.12 3.04 6.18 -52.48 -0.32 2.72 16 39 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 40 H 0.11 2.39 7.60 -52.49 -0.40 1.99 16 41 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -29.03 370.31 -12.11 -41.14 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.95 Total: 10.93 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: -2.46 Total: -38.15 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.59 Total: -33.83 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.94 Total: -41.39 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 46.13 SS G_CDS: -2.91 Total: 43.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.03 -12.11 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795118996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.091 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds