Wall clock time and date at job start Sat Apr 11 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81401 * 103.00248 * 2 1 4 4 H 1.08996 * 110.01537 * 306.39327 * 3 2 1 5 5 C 1.53875 * 110.07340 * 67.80609 * 3 2 1 6 6 C 1.54265 * 106.59796 * 119.30638 * 5 3 2 7 7 C 1.55239 * 104.23086 * 23.61538 * 6 5 3 8 8 H 1.09000 * 110.76843 * 80.30781 * 7 6 5 9 9 N 1.46503 * 110.90017 * 203.78932 * 7 6 5 10 10 S 1.65595 * 119.99985 * 258.21598 * 9 7 6 11 11 O 1.42100 * 106.39976 * 178.54143 * 10 9 7 12 12 O 1.42096 * 106.40266 * 311.45550 * 10 9 7 13 13 C 1.76195 * 107.22150 * 64.99783 * 10 9 7 14 14 C 1.38656 * 119.87329 * 89.99396 * 13 10 9 15 15 C 1.38615 * 120.49841 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.24796 * 0.02562 * 15 14 13 17 17 C 1.40691 * 119.74770 * 359.97438 * 16 15 14 18 18 C 1.41394 * 120.24855 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00410 * 155.18715 * 18 17 16 20 20 C 1.39950 * 119.99594 * 335.18835 * 18 17 16 21 21 N 1.30819 * 120.00233 * 342.33169 * 20 18 17 22 22 Si 1.86801 * 119.99617 * 162.32459 * 20 18 17 23 23 H 1.48496 * 109.47514 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47022 * 120.00240 * 22 20 18 25 25 H 1.48505 * 109.46947 * 239.99830 * 22 20 18 26 26 C 1.37590 * 119.87414 * 269.72619 * 13 10 9 27 27 C 1.54270 * 110.03255 * 185.00033 * 3 2 1 28 28 H 1.09003 * 109.47254 * 299.99726 * 1 2 3 29 29 H 1.08997 * 109.47430 * 59.99848 * 1 2 3 30 30 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08995 * 110.03395 * 238.59206 * 5 3 2 32 32 H 1.09003 * 110.03052 * 0.02803 * 5 3 2 33 33 H 1.09002 * 110.48637 * 142.28628 * 6 5 3 34 34 H 1.08998 * 110.49261 * 264.93541 * 6 5 3 35 35 H 0.96999 * 119.99532 * 78.21018 * 9 7 6 36 36 H 1.07993 * 119.75286 * 0.02562 * 14 13 10 37 37 H 1.08002 * 119.87472 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.12320 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00200 * 179.97438 * 21 20 18 40 40 H 1.07996 * 120.12941 * 359.97438 * 26 13 10 41 41 H 1.08997 * 110.48634 * 335.73228 * 27 3 2 42 42 H 1.08999 * 110.48336 * 98.24887 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7139 2.2677 -0.8244 5 6 1.8089 2.4049 1.3382 6 6 3.0980 2.9601 1.9784 7 6 4.0579 3.1765 0.7777 8 1 3.8274 4.1086 0.2618 9 7 5.4557 3.1557 1.2157 10 16 6.2867 4.5761 1.4004 11 8 7.5843 4.2248 1.8609 12 8 6.0596 5.3305 0.2178 13 6 5.5164 5.4643 2.7128 14 6 5.9479 5.2804 4.0176 15 6 5.3515 5.9728 5.0599 16 6 4.3222 6.8515 4.8093 17 6 3.8761 7.0460 3.4892 18 6 2.8199 7.9465 3.2197 19 1 2.7342 8.4021 2.2442 20 6 1.8854 8.2476 4.2170 21 7 1.7672 7.4666 5.2599 22 14 0.8071 9.7647 4.0592 23 1 1.1337 10.4751 2.7968 24 1 -0.6209 9.3574 4.0422 25 1 1.0507 10.6673 5.2131 26 6 4.4928 6.3417 2.4383 27 6 3.7478 1.9576 -0.1263 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.1004 3.2145 1.1632 32 1 1.3634 1.6521 1.9885 33 1 2.8974 3.9061 2.4813 34 1 3.5188 2.2372 2.6773 35 1 5.8944 2.3099 1.3976 36 1 6.7552 4.5933 4.2234 37 1 5.6959 5.8222 6.0724 38 1 3.8587 7.3896 5.6230 39 1 1.1197 7.6754 5.9513 40 1 4.1615 6.4869 1.4207 41 1 4.2734 1.0728 0.2327 42 1 4.0214 2.1697 -1.1599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795118996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:59 Heat of formation + Delta-G solvation = -90.991090 kcal Electronic energy + Delta-G solvation = -25603.045803 eV Core-core repulsion = 21992.258765 eV Total energy + Delta-G solvation = -3610.787038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56192 -39.33884 -38.22167 -36.91374 -35.64885 -34.60527 -31.89229 -31.58348 -29.98052 -29.66883 -27.99917 -27.31539 -23.64921 -22.81215 -21.96890 -21.54423 -20.68227 -19.68094 -18.54299 -17.89795 -17.66825 -16.97937 -16.84258 -16.64458 -16.42294 -16.00593 -15.24467 -15.07298 -14.83388 -14.62361 -14.41761 -14.30003 -14.24908 -13.69891 -13.59719 -13.32348 -13.21900 -13.13517 -13.05143 -13.03467 -12.86908 -12.78366 -12.61245 -12.37898 -12.20719 -12.14561 -11.93009 -11.66822 -11.53282 -11.31861 -11.13582 -10.70960 -10.41423 -9.81940 -9.53123 -8.71696 -8.62654 -6.42660 -0.49507 0.42902 0.77589 0.86337 1.38302 1.44828 1.52413 1.66479 2.11059 2.18100 2.56940 2.79274 3.38242 3.48788 3.54022 3.59643 3.89108 4.24115 4.30302 4.32714 4.37163 4.37941 4.40655 4.45091 4.47358 4.55337 4.62913 4.85824 4.87333 4.92036 4.92677 5.07523 5.08640 5.19422 5.22318 5.28354 5.38545 5.42902 5.58786 5.91440 5.96149 6.10617 6.14547 6.54996 6.82310 6.87080 8.26069 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009221 B = 0.004246 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.850323 B = 6593.604197 C = 8700.049992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.291 6.291 3 C -0.047 4.047 4 H 0.103 0.897 5 C -0.114 4.114 6 C -0.138 4.138 7 C 0.147 3.853 8 H 0.096 0.904 9 N -1.094 6.094 10 S 2.717 3.283 11 O -0.990 6.990 12 O -0.992 6.992 13 C -0.634 4.634 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.140 4.140 17 C 0.067 3.933 18 C -0.495 4.495 19 H 0.078 0.922 20 C 0.042 3.958 21 N -0.820 5.820 22 Si 0.977 3.023 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.265 1.265 26 C -0.137 4.137 27 C -0.097 4.097 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.428 0.572 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.291 0.709 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 -11.734 -6.590 14.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.064 6.064 3 C -0.177 4.177 4 H 0.121 0.879 5 C -0.154 4.154 6 C -0.178 4.178 7 C 0.038 3.962 8 H 0.114 0.886 9 N -0.854 5.854 10 S 2.810 3.190 11 O -0.980 6.980 12 O -0.982 6.982 13 C -0.723 4.723 14 C -0.168 4.168 15 C -0.143 4.143 16 C -0.160 4.160 17 C 0.064 3.936 18 C -0.524 4.524 19 H 0.096 0.904 20 C -0.174 4.174 21 N -0.446 5.446 22 Si 0.798 3.202 23 H -0.184 1.184 24 H -0.189 1.189 25 H -0.190 1.190 26 C -0.158 4.158 27 C -0.137 4.137 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.266 0.734 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.109 0.891 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.751 -12.244 -6.948 14.344 hybrid contribution -1.687 1.612 1.027 2.550 sum -4.438 -10.632 -5.920 12.953 Atomic orbital electron populations 1.23444 0.92001 1.07246 1.05697 1.86901 1.10025 1.11551 1.97926 1.23709 0.99680 0.93190 1.01077 0.87852 1.22454 0.97526 1.00478 0.94908 1.22840 0.95599 1.01427 0.97905 1.21903 0.79019 1.00382 0.94879 0.88615 1.55149 1.22671 1.23687 1.83896 1.00809 0.72252 0.72738 0.73165 1.93499 1.37993 1.83670 1.82837 1.93503 1.86215 1.71535 1.46917 1.30168 1.12484 1.15595 1.14101 1.20412 1.01767 1.03567 0.91026 1.21109 0.96784 0.97695 0.98669 1.21614 0.96737 1.00108 0.97551 1.17983 0.92216 0.91393 0.92028 1.19849 1.09088 1.23745 0.99753 0.90375 1.26648 0.98074 0.99126 0.93559 1.69815 1.30936 1.34602 1.09206 0.85226 0.77687 0.77662 0.79638 1.18362 1.18872 1.18978 1.20803 0.98226 0.98274 0.98513 1.22412 0.92735 0.97470 1.01059 0.90109 0.89581 0.87106 0.90906 0.90170 0.92694 0.90279 0.73437 0.85412 0.85923 0.87123 0.89856 0.87109 0.89130 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 10.64 113.37 1.21 -0.37 16 2 S -0.29 -5.55 21.34 -56.49 -1.21 -6.76 16 3 C -0.05 -0.91 3.41 31.32 0.11 -0.80 16 4 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 5 C -0.11 -2.51 6.37 31.32 0.20 -2.31 16 6 C -0.14 -3.72 6.53 31.79 0.21 -3.51 16 7 C 0.15 3.74 3.58 46.41 0.17 3.91 16 8 H 0.10 2.66 7.60 -2.39 -0.02 2.65 16 9 N -1.09 -28.98 5.60 -163.52 -0.92 -29.89 16 10 S 2.72 96.54 5.71 -56.49 -0.32 96.22 16 11 O -0.99 -38.13 17.27 -128.00 -2.21 -40.34 16 12 O -0.99 -39.95 16.66 -128.00 -2.13 -42.08 16 13 C -0.63 -26.57 5.94 22.22 0.13 -26.44 16 14 C -0.15 -6.13 9.53 22.46 0.21 -5.91 16 15 C -0.12 -5.40 10.02 22.22 0.22 -5.18 16 16 C -0.14 -6.96 8.70 22.73 0.20 -6.76 16 17 C 0.07 3.43 5.57 -21.29 -0.12 3.31 16 18 C -0.50 -25.31 9.05 23.46 0.21 -25.10 16 19 H 0.08 3.90 7.91 -2.91 -0.02 3.88 16 20 C 0.04 1.98 5.14 85.26 0.44 2.41 16 21 N -0.82 -39.93 10.97 21.83 0.24 -39.69 16 22 Si 0.98 36.19 29.59 68.60 2.03 38.22 16 23 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 25 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 26 C -0.14 -6.40 9.26 22.73 0.21 -6.19 16 27 C -0.10 -1.92 6.02 31.67 0.19 -1.73 16 28 H 0.08 1.08 7.92 -2.39 -0.02 1.06 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.70 7.38 -2.39 -0.02 1.69 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.43 8.87 8.82 -96.75 -0.85 8.02 16 36 H 0.13 4.70 7.60 -2.91 -0.02 4.68 16 37 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.11 5.67 6.18 -2.91 -0.02 5.66 16 39 H 0.29 12.74 8.30 -92.71 -0.77 11.97 16 40 H 0.11 5.01 7.60 -2.91 -0.02 4.99 16 41 H 0.09 1.69 7.73 -2.39 -0.02 1.68 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -62.56 370.31 -0.75 -63.31 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.18 Total: 35.68 kcal Atomic # 6 Polarization: -78.25 SS G_CDS: 3.59 Total: -74.67 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -0.68 Total: -69.59 kcal Atomic # 8 Polarization: -78.08 SS G_CDS: -4.34 Total: -82.42 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Atomic # 16 Polarization: 90.99 SS G_CDS: -1.53 Total: 89.46 kcal Total: -62.56 -0.75 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795118996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.677 kcal (2) G-P(sol) polarization free energy of solvation -62.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds