Wall clock time and date at job start Sat Apr 11 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81400 * 102.99764 * 2 1 4 4 H 1.09002 * 110.05639 * 306.41269 * 3 2 1 5 5 C 1.54258 * 110.03243 * 67.83772 * 3 2 1 6 6 C 1.54893 * 104.19545 * 142.89020 * 5 3 2 7 7 C 1.54882 * 102.74843 * 322.05738 * 6 5 3 8 8 H 1.09001 * 110.48904 * 279.26148 * 7 6 5 9 9 N 1.46503 * 110.60031 * 156.67590 * 7 6 5 10 10 S 1.65597 * 119.99977 * 98.31358 * 9 7 6 11 11 O 1.42105 * 106.40411 * 178.54339 * 10 9 7 12 12 O 1.42098 * 106.40906 * 311.46369 * 10 9 7 13 13 C 1.76204 * 107.21813 * 65.00408 * 10 9 7 14 14 C 1.38658 * 119.87330 * 89.99868 * 13 10 9 15 15 C 1.38616 * 120.49968 * 179.97438 * 14 13 10 16 16 C 1.37643 * 120.24724 * 359.97438 * 15 14 13 17 17 C 1.40695 * 119.74402 * 0.02562 * 16 15 14 18 18 C 1.41395 * 120.24307 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00148 * 155.18802 * 18 17 16 20 20 C 1.39947 * 120.00073 * 335.18124 * 18 17 16 21 21 N 1.30825 * 119.99768 * 342.34045 * 20 18 17 22 22 Si 1.86793 * 120.00359 * 162.34052 * 20 18 17 23 23 H 1.48497 * 109.47113 * 59.99720 * 22 20 18 24 24 H 1.48498 * 109.47230 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46866 * 300.00074 * 22 20 18 26 26 C 1.37598 * 119.87551 * 269.72337 * 13 10 9 27 27 C 1.53881 * 110.02742 * 185.00324 * 3 2 1 28 28 H 1.09007 * 109.46625 * 299.99779 * 1 2 3 29 29 H 1.08991 * 109.47396 * 60.00026 * 1 2 3 30 30 H 1.09001 * 109.46973 * 180.02562 * 1 2 3 31 31 H 1.08999 * 110.48949 * 261.57124 * 5 3 2 32 32 H 1.09003 * 110.48860 * 24.08202 * 5 3 2 33 33 H 1.09000 * 110.75509 * 203.73755 * 6 5 3 34 34 H 1.09008 * 110.75405 * 80.37540 * 6 5 3 35 35 H 0.96996 * 119.99794 * 278.32324 * 9 7 6 36 36 H 1.07997 * 119.75137 * 359.95832 * 14 13 10 37 37 H 1.07997 * 119.87702 * 179.97438 * 15 14 13 38 38 H 1.07994 * 120.12507 * 179.97438 * 16 15 14 39 39 H 0.96998 * 120.00086 * 179.97438 * 21 20 18 40 40 H 1.07997 * 120.12503 * 359.97438 * 26 13 10 41 41 H 1.09001 * 110.03270 * 121.43276 * 27 3 2 42 42 H 1.08996 * 110.07544 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7139 2.2685 -0.8240 5 6 1.8082 2.4054 1.3422 6 6 2.9277 3.4351 1.6345 7 6 4.2016 2.7036 1.1439 8 1 4.5497 1.9969 1.8972 9 7 5.2568 3.6669 0.8202 10 16 6.4532 3.9852 1.9199 11 8 7.3273 4.9204 1.3026 12 8 5.8039 4.2298 3.1600 13 6 7.3793 2.5006 2.1275 14 6 8.4751 2.2509 1.3154 15 6 9.2131 1.0875 1.4678 16 6 8.8649 0.1665 2.4296 17 6 7.7549 0.4094 3.2593 18 6 7.3881 -0.5293 4.2510 19 1 6.8340 -0.2076 5.1205 20 6 7.7430 -1.8752 4.1060 21 7 8.0953 -2.3361 2.9334 22 14 7.7137 -3.0137 5.5866 23 1 6.3389 -3.0634 6.1457 24 1 8.1292 -4.3774 5.1708 25 1 8.6505 -2.5050 6.6207 26 6 7.0157 1.5961 3.0986 27 6 3.7439 1.9571 -0.1261 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.8449 2.9062 1.2457 32 1 1.7674 1.6501 2.1271 33 1 2.9898 3.6454 2.7023 34 1 2.7664 4.3523 1.0679 35 1 5.2545 4.1184 -0.0383 36 1 8.7556 2.9681 0.5583 37 1 10.0645 0.9030 0.8295 38 1 9.4410 -0.7394 2.5463 39 1 8.3416 -3.2689 2.8329 40 1 6.1648 1.7950 3.7332 41 1 3.9742 2.5501 -1.0112 42 1 4.2379 0.9874 -0.1878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795119004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:02 Heat of formation + Delta-G solvation = -91.353365 kcal Electronic energy + Delta-G solvation = -25518.892876 eV Core-core repulsion = 21908.090129 eV Total energy + Delta-G solvation = -3610.802747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.56102 -39.39362 -38.19863 -36.89574 -35.66576 -34.58376 -31.91407 -31.59697 -29.97186 -29.69189 -27.97755 -27.33649 -23.67129 -22.84569 -21.87328 -21.65799 -20.71820 -19.64568 -18.58499 -17.74433 -17.60130 -17.38202 -16.96438 -16.47342 -16.26427 -15.85958 -15.36476 -15.09164 -15.01344 -14.58281 -14.41654 -14.30610 -14.18590 -13.72197 -13.57300 -13.33784 -13.19920 -13.12800 -13.04103 -13.03503 -12.87947 -12.81581 -12.60338 -12.28776 -12.20813 -12.12308 -11.91030 -11.71478 -11.56361 -11.34146 -11.13777 -10.67390 -10.41561 -9.85276 -9.55570 -8.72843 -8.65036 -6.44768 -0.48748 0.40621 0.80953 0.84787 1.36942 1.46237 1.49648 1.71317 2.11505 2.17520 2.55420 2.78739 3.45606 3.48109 3.48570 3.53167 4.03748 4.17133 4.29530 4.34163 4.37183 4.38554 4.40137 4.43820 4.44664 4.57526 4.67222 4.83663 4.89699 4.90098 4.92266 5.05388 5.06409 5.16826 5.20715 5.26511 5.41058 5.41436 5.56071 5.88711 5.93856 6.09657 6.17082 6.52537 6.80162 6.84833 8.24929 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.008168 B = 0.004747 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.113386 B = 5897.432220 C = 8253.945712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.331 6.331 3 C -0.038 4.038 4 H 0.116 0.884 5 C -0.115 4.115 6 C -0.133 4.133 7 C 0.144 3.856 8 H 0.073 0.927 9 N -1.093 6.093 10 S 2.719 3.281 11 O -0.989 6.989 12 O -0.988 6.988 13 C -0.640 4.640 14 C -0.150 4.150 15 C -0.124 4.124 16 C -0.142 4.142 17 C 0.064 3.936 18 C -0.497 4.497 19 H 0.079 0.921 20 C 0.039 3.961 21 N -0.821 5.821 22 Si 0.980 3.020 23 H -0.259 1.259 24 H -0.265 1.265 25 H -0.261 1.261 26 C -0.144 4.144 27 C -0.105 4.105 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.429 0.571 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.292 0.708 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 5.527 -7.498 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.104 6.104 3 C -0.167 4.167 4 H 0.135 0.865 5 C -0.154 4.154 6 C -0.173 4.173 7 C 0.036 3.964 8 H 0.091 0.909 9 N -0.854 5.854 10 S 2.811 3.189 11 O -0.979 6.979 12 O -0.978 6.978 13 C -0.728 4.728 14 C -0.170 4.170 15 C -0.143 4.143 16 C -0.161 4.161 17 C 0.061 3.939 18 C -0.526 4.526 19 H 0.097 0.903 20 C -0.176 4.176 21 N -0.446 5.446 22 Si 0.800 3.200 23 H -0.183 1.183 24 H -0.189 1.189 25 H -0.185 1.185 26 C -0.165 4.165 27 C -0.145 4.145 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.267 0.733 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.748 5.129 -7.070 15.453 hybrid contribution -0.186 -0.551 0.170 0.606 sum -12.934 4.578 -6.900 15.358 Atomic orbital electron populations 1.23381 0.91075 1.07069 1.05994 1.87632 1.11049 1.13753 1.97999 1.23739 0.98837 0.91791 1.02296 0.86543 1.22741 0.99455 0.98181 0.95057 1.22988 0.92831 0.99143 1.02336 1.21686 0.87653 0.89574 0.97453 0.90888 1.55228 1.39892 1.56490 1.33826 1.00828 0.72400 0.72886 0.72803 1.93498 1.66175 1.60907 1.77332 1.93508 1.75441 1.84487 1.44320 1.30288 1.13111 1.21775 1.07634 1.20450 0.97003 0.98492 1.01079 1.21142 1.00014 0.94455 0.98681 1.21634 0.97101 0.99323 0.98091 1.18025 0.90894 0.92261 0.92704 1.19824 1.33422 0.93132 1.06203 0.90309 1.26715 0.91482 1.00075 0.99365 1.69810 1.32540 1.17429 1.24859 0.85276 0.80088 0.76657 0.77939 1.18317 1.18939 1.18499 1.20845 1.00407 0.96234 0.99036 1.22244 0.93046 1.00844 0.98416 0.89465 0.89057 0.87858 0.88282 0.91156 0.91063 0.88360 0.73281 0.85125 0.85680 0.87006 0.89769 0.87159 0.87348 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.64 113.37 1.21 -0.34 16 2 S -0.33 -7.83 21.33 -56.49 -1.21 -9.04 16 3 C -0.04 -0.71 3.42 31.32 0.11 -0.60 16 4 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 5 C -0.11 -2.06 6.26 31.67 0.20 -1.86 16 6 C -0.13 -2.81 6.58 31.88 0.21 -2.60 16 7 C 0.14 3.80 3.39 46.06 0.16 3.95 16 8 H 0.07 2.40 7.38 -2.39 -0.02 2.38 16 9 N -1.09 -28.68 5.59 -164.93 -0.92 -29.60 16 10 S 2.72 97.58 5.66 -56.49 -0.32 97.26 16 11 O -0.99 -38.01 17.27 -128.00 -2.21 -40.22 16 12 O -0.99 -40.01 17.02 -128.00 -2.18 -42.19 16 13 C -0.64 -27.82 5.87 22.22 0.13 -27.69 16 14 C -0.15 -6.43 9.53 22.46 0.21 -6.22 16 15 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 16 C -0.14 -7.29 8.70 22.73 0.20 -7.10 16 17 C 0.06 3.45 5.57 -21.29 -0.12 3.33 16 18 C -0.50 -26.48 9.05 23.46 0.21 -26.27 16 19 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 20 C 0.04 1.95 5.14 85.26 0.44 2.39 16 21 N -0.82 -41.75 10.97 21.83 0.24 -41.51 16 22 Si 0.98 37.60 29.59 68.60 2.03 39.63 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 26 C -0.14 -7.07 8.70 22.73 0.20 -6.87 16 27 C -0.11 -2.38 6.21 31.32 0.19 -2.19 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.50 7.81 -2.39 -0.02 1.48 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.43 8.27 8.62 -96.75 -0.83 7.44 16 36 H 0.13 4.89 7.60 -2.91 -0.02 4.87 16 37 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.11 5.92 6.18 -2.91 -0.02 5.90 16 39 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 40 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 41 H 0.11 1.86 7.80 -2.39 -0.02 1.84 16 42 H 0.06 1.72 7.60 -2.39 -0.02 1.70 16 Total: -1.00 -67.41 369.67 -0.80 -68.21 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.20 Total: 34.91 kcal Atomic # 6 Polarization: -81.01 SS G_CDS: 3.57 Total: -77.45 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -0.68 Total: -71.11 kcal Atomic # 8 Polarization: -78.02 SS G_CDS: -4.39 Total: -82.41 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 89.74 SS G_CDS: -1.52 Total: 88.22 kcal Total: -67.41 -0.80 -68.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795119004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.145 kcal (2) G-P(sol) polarization free energy of solvation -67.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds