Wall clock time and date at job start Sat Apr 11 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42095 * 110.54294 * 2 1 4 4 O 1.42100 * 110.54314 * 223.24473 * 2 1 3 5 5 C 1.76195 * 104.44657 * 111.62207 * 2 1 3 6 6 C 1.38465 * 119.89455 * 90.00281 * 5 2 1 7 7 C 1.38196 * 120.34462 * 180.02562 * 6 5 2 8 8 C 1.38325 * 120.11907 * 0.02562 * 7 6 5 9 9 F 1.35097 * 120.11280 * 179.97438 * 8 7 6 10 10 C 1.39822 * 119.77607 * 359.97438 * 8 7 6 11 11 C 1.47689 * 120.16608 * 180.02562 * 10 8 7 12 12 O 1.21576 * 120.00101 * 5.58827 * 11 10 8 13 13 N 1.34776 * 119.99993 * 185.59000 * 11 10 8 14 14 C 1.46507 * 119.99776 * 184.73054 * 13 11 10 15 15 C 1.53005 * 109.46908 * 175.05524 * 14 13 11 16 16 C 1.50704 * 115.54682 * 59.29950 * 15 14 13 17 17 H 1.08000 * 120.00110 * 215.47755 * 16 15 14 18 18 C 1.37883 * 119.99900 * 35.75593 * 16 15 14 19 19 N 1.31515 * 119.99850 * 9.00333 * 18 16 15 20 20 Si 1.86793 * 119.99711 * 189.00072 * 18 16 15 21 21 H 1.48509 * 109.47174 * 60.00097 * 20 18 16 22 22 H 1.48501 * 109.47268 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47420 * 299.99974 * 20 18 16 24 24 C 1.53001 * 117.49970 * 204.96816 * 15 14 13 25 25 C 1.52998 * 117.50297 * 273.62871 * 15 14 13 26 26 C 1.37860 * 119.89394 * 270.29655 * 5 2 1 27 27 H 1.09003 * 109.46860 * 308.37868 * 1 2 3 28 28 H 1.09001 * 109.46880 * 68.37814 * 1 2 3 29 29 H 1.08996 * 109.47060 * 188.37752 * 1 2 3 30 30 H 1.08003 * 119.82544 * 359.97438 * 6 5 2 31 31 H 1.08000 * 119.94308 * 179.97438 * 7 6 5 32 32 H 0.97002 * 120.00583 * 4.72633 * 13 11 10 33 33 H 1.08999 * 109.47016 * 55.06236 * 14 13 11 34 34 H 1.08990 * 109.47252 * 295.05418 * 14 13 11 35 35 H 0.97000 * 119.99538 * 184.99977 * 19 18 16 36 36 H 1.09004 * 117.49941 * 215.00824 * 24 15 14 37 37 H 1.08997 * 117.49736 * 0.02743 * 24 15 14 38 38 H 1.09000 * 117.49813 * 359.97438 * 25 15 14 39 39 H 1.08998 * 117.49953 * 144.97157 * 25 15 14 40 40 H 1.08000 * 120.05840 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2536 -0.6287 1.5862 6 6 2.4259 -1.9909 1.7651 7 6 2.7701 -2.4942 3.0053 8 6 2.9445 -1.6381 4.0777 9 9 3.2805 -2.1303 5.2902 10 6 2.7719 -0.2617 3.9027 11 6 2.9565 0.6602 5.0417 12 8 3.3575 0.2362 6.1081 13 7 2.6803 1.9716 4.8988 14 6 2.9610 2.9029 5.9944 15 6 2.6738 4.3335 5.5339 16 6 1.2604 4.6000 5.0839 17 1 1.0729 5.2843 4.2697 18 6 0.2063 3.9746 5.7154 19 7 0.4141 3.2874 6.8173 20 14 -1.5168 4.1034 5.0059 21 1 -1.5313 3.5339 3.6344 22 1 -2.4637 3.3480 5.8650 23 1 -1.9253 5.5302 4.9538 24 6 3.4139 5.4671 6.2467 25 6 3.7973 5.0833 4.8153 26 6 2.4191 0.2366 2.6466 27 1 -0.3633 0.6381 0.8056 28 1 -0.3633 0.3787 -0.9554 29 1 -0.3633 -1.0167 0.1497 30 1 2.2896 -2.6637 0.9313 31 1 2.9024 -3.5578 3.1376 32 1 2.2958 2.2989 4.0706 33 1 4.0083 2.8179 6.2842 34 1 2.3271 2.6617 6.8476 35 1 -0.3125 2.7879 7.2216 36 1 2.8786 6.4057 6.3902 37 1 4.1057 5.1937 7.0434 38 1 4.7412 4.5577 4.6710 39 1 3.5142 5.7691 4.0168 40 1 2.2799 1.2982 2.5052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:37 Heat of formation + Delta-G solvation = -90.230392 kcal Electronic energy + Delta-G solvation = -27838.032069 eV Core-core repulsion = 23661.064842 eV Total energy + Delta-G solvation = -4176.967227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.01331 -39.81208 -38.23400 -37.31324 -36.68693 -36.14437 -33.38322 -32.29878 -31.50532 -31.15877 -29.72754 -26.38284 -25.50858 -23.93065 -23.22716 -21.29546 -20.44300 -19.47777 -18.99630 -18.33054 -17.40913 -16.98762 -16.65212 -16.41942 -15.86674 -15.78634 -15.62624 -14.88885 -14.81930 -14.55870 -14.27692 -13.88166 -13.76054 -13.52322 -13.38293 -13.33721 -13.12602 -12.67867 -12.56708 -12.28449 -12.21917 -11.84595 -11.75550 -11.61000 -11.36784 -11.07202 -11.04173 -10.87814 -10.56443 -10.32915 -9.77086 -9.47188 -9.31133 -9.29068 -9.21101 -8.89039 -8.34706 -8.00734 -6.13451 -4.25927 -0.20996 0.36379 0.68210 2.55611 2.72130 3.14269 3.23751 3.24162 3.59760 3.64845 3.79782 3.87151 3.94751 4.23213 4.32178 4.50955 4.58409 4.62193 4.84777 4.98423 5.12703 5.24170 5.39191 5.42876 5.45322 5.60183 5.72255 5.81593 5.96877 6.26005 6.40578 6.49246 6.57684 6.64698 6.85007 7.01150 7.22910 7.37943 7.50573 7.88231 8.24128 8.28556 8.73666 8.85370 9.36268 10.82174 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004589 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.116773 B = 6099.877065 C = 7211.049086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.503 3.497 3 O -0.928 6.928 4 O -0.939 6.939 5 C -0.685 4.685 6 C 0.019 3.981 7 C -0.186 4.186 8 C 0.208 3.792 9 F -0.104 7.104 10 C -0.176 4.176 11 C 0.542 3.458 12 O -0.541 6.541 13 N -0.681 5.681 14 C 0.152 3.848 15 C 0.034 3.966 16 C -0.496 4.496 17 H 0.063 0.937 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.889 3.111 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.193 4.193 25 C -0.210 4.210 26 C 0.036 3.964 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.399 0.601 33 H 0.030 0.970 34 H 0.122 0.878 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 -10.722 -12.639 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.681 3.319 3 O -0.925 6.925 4 O -0.936 6.936 5 C -0.771 4.771 6 C 0.000 4.000 7 C -0.205 4.205 8 C 0.187 3.813 9 F -0.082 7.082 10 C -0.181 4.181 11 C 0.326 3.674 12 O -0.420 6.420 13 N -0.328 5.328 14 C 0.030 3.970 15 C 0.033 3.967 16 C -0.533 4.533 17 H 0.081 0.919 18 C -0.132 4.132 19 N -0.504 5.504 20 Si 0.716 3.284 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.231 4.231 25 C -0.247 4.247 26 C 0.017 3.983 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.235 0.765 33 H 0.049 0.951 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.008 -10.797 -12.240 16.321 hybrid contribution -1.491 -0.101 0.294 1.523 sum -1.499 -10.897 -11.946 16.239 Atomic orbital electron populations 1.30240 1.25305 1.12256 1.12323 1.05181 0.78013 0.74758 0.73913 1.93634 1.77219 1.35985 1.85646 1.93578 1.77547 1.61856 1.60597 1.30581 1.21184 1.02859 1.22502 1.20881 0.89209 0.93066 0.96830 1.21236 1.06340 1.00818 0.92142 1.18010 0.91447 0.90880 0.80963 1.91636 1.87762 1.87538 1.41260 1.20519 1.08060 0.93253 0.96301 1.17761 0.80045 0.82795 0.86792 1.90796 1.47507 1.76705 1.27014 1.45791 1.61238 1.06033 1.19777 1.21286 0.97907 0.86974 0.90866 1.19193 0.91592 0.88452 0.97456 1.20518 0.88330 1.27456 1.17004 0.91866 1.24973 0.98912 0.95427 0.93845 1.69799 1.32830 1.30718 1.17014 0.86708 0.84115 0.78579 0.79012 1.20067 1.21198 1.19991 1.22917 1.04709 1.02189 0.93335 1.22956 1.00120 1.06271 0.95382 1.21137 0.87333 1.00360 0.89506 0.84448 0.84821 0.84926 0.82852 0.83192 0.76511 0.95136 0.86024 0.92503 0.90110 0.91455 0.91273 0.90390 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.67 10.80 101.05 1.09 -2.58 16 2 S 2.50 23.26 5.79 -107.50 -0.62 22.63 16 3 O -0.93 -12.19 17.12 -57.54 -0.99 -13.17 16 4 O -0.94 -10.58 17.11 -57.54 -0.98 -11.56 16 5 C -0.69 -7.41 5.65 -39.64 -0.22 -7.64 16 6 C 0.02 0.18 9.46 -39.51 -0.37 -0.19 16 7 C -0.19 -1.98 10.01 -39.56 -0.40 -2.38 16 8 C 0.21 3.08 7.28 -38.96 -0.28 2.80 16 9 F -0.10 -1.77 15.57 2.25 0.04 -1.73 16 10 C -0.18 -2.88 5.88 -104.91 -0.62 -3.50 16 11 C 0.54 11.13 7.75 -12.40 -0.10 11.03 16 12 O -0.54 -12.91 15.37 5.30 0.08 -12.83 16 13 N -0.68 -14.15 5.38 -61.30 -0.33 -14.48 16 14 C 0.15 3.52 4.86 -4.04 -0.02 3.50 16 15 C 0.03 0.78 1.92 -155.66 -0.30 0.48 16 16 C -0.50 -12.23 8.52 -34.44 -0.29 -12.52 16 17 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 18 C 0.07 1.81 5.27 -17.82 -0.09 1.71 16 19 N -0.87 -22.72 10.62 55.43 0.59 -22.13 16 20 Si 0.89 19.23 29.55 -169.99 -5.02 14.21 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.19 -4.18 9.95 -26.69 -0.27 -4.44 16 25 C -0.21 -4.31 9.95 -26.70 -0.27 -4.58 16 26 C 0.04 0.49 8.93 -39.19 -0.35 0.14 16 27 H 0.14 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.15 0.97 7.56 -52.48 -0.40 0.57 16 31 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.40 7.66 6.22 -40.82 -0.25 7.41 16 33 H 0.03 0.70 8.11 -51.93 -0.42 0.28 16 34 H 0.12 3.22 5.69 -51.93 -0.30 2.92 16 35 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.16 2.04 5.99 -52.49 -0.31 1.72 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -33.59 358.83 -8.93 -42.52 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.61 Total: 9.29 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -2.49 Total: -18.15 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.26 Total: -36.61 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.89 Total: -37.56 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 16 Polarization: 23.26 SS G_CDS: -0.62 Total: 22.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.59 -8.93 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.714 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds