Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42095 * 110.54294 * 2 1 4 4 O 1.42100 * 110.54314 * 223.24473 * 2 1 3 5 5 C 1.76195 * 104.44657 * 111.62207 * 2 1 3 6 6 C 1.38465 * 119.89455 * 90.00281 * 5 2 1 7 7 C 1.38196 * 120.34462 * 180.02562 * 6 5 2 8 8 C 1.38325 * 120.11907 * 0.02562 * 7 6 5 9 9 F 1.35097 * 120.11280 * 179.97438 * 8 7 6 10 10 C 1.39822 * 119.77607 * 359.97438 * 8 7 6 11 11 C 1.47689 * 120.16608 * 180.02562 * 10 8 7 12 12 O 1.21576 * 120.00101 * 5.58827 * 11 10 8 13 13 N 1.34776 * 119.99993 * 185.59000 * 11 10 8 14 14 C 1.46507 * 119.99776 * 184.73054 * 13 11 10 15 15 C 1.53005 * 109.46908 * 175.05524 * 14 13 11 16 16 C 1.50704 * 115.54682 * 59.29950 * 15 14 13 17 17 H 1.08000 * 120.00110 * 215.47755 * 16 15 14 18 18 C 1.37883 * 119.99900 * 35.75593 * 16 15 14 19 19 N 1.31515 * 119.99850 * 9.00333 * 18 16 15 20 20 Si 1.86793 * 119.99711 * 189.00072 * 18 16 15 21 21 H 1.48509 * 109.47174 * 60.00097 * 20 18 16 22 22 H 1.48501 * 109.47268 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47420 * 299.99974 * 20 18 16 24 24 C 1.53001 * 117.49970 * 204.96816 * 15 14 13 25 25 C 1.52998 * 117.50297 * 273.62871 * 15 14 13 26 26 C 1.37860 * 119.89394 * 270.29655 * 5 2 1 27 27 H 1.09003 * 109.46860 * 308.37868 * 1 2 3 28 28 H 1.09001 * 109.46880 * 68.37814 * 1 2 3 29 29 H 1.08996 * 109.47060 * 188.37752 * 1 2 3 30 30 H 1.08003 * 119.82544 * 359.97438 * 6 5 2 31 31 H 1.08000 * 119.94308 * 179.97438 * 7 6 5 32 32 H 0.97002 * 120.00583 * 4.72633 * 13 11 10 33 33 H 1.08999 * 109.47016 * 55.06236 * 14 13 11 34 34 H 1.08990 * 109.47252 * 295.05418 * 14 13 11 35 35 H 0.97000 * 119.99538 * 184.99977 * 19 18 16 36 36 H 1.09004 * 117.49941 * 215.00824 * 24 15 14 37 37 H 1.08997 * 117.49736 * 0.02743 * 24 15 14 38 38 H 1.09000 * 117.49813 * 359.97438 * 25 15 14 39 39 H 1.08998 * 117.49953 * 144.97157 * 25 15 14 40 40 H 1.08000 * 120.05840 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2536 -0.6287 1.5862 6 6 2.4259 -1.9909 1.7651 7 6 2.7701 -2.4942 3.0053 8 6 2.9445 -1.6381 4.0777 9 9 3.2805 -2.1303 5.2902 10 6 2.7719 -0.2617 3.9027 11 6 2.9565 0.6602 5.0417 12 8 3.3575 0.2362 6.1081 13 7 2.6803 1.9716 4.8988 14 6 2.9610 2.9029 5.9944 15 6 2.6738 4.3335 5.5339 16 6 1.2604 4.6000 5.0839 17 1 1.0729 5.2843 4.2697 18 6 0.2063 3.9746 5.7154 19 7 0.4141 3.2874 6.8173 20 14 -1.5168 4.1034 5.0059 21 1 -1.5313 3.5339 3.6344 22 1 -2.4637 3.3480 5.8650 23 1 -1.9253 5.5302 4.9538 24 6 3.4139 5.4671 6.2467 25 6 3.7973 5.0833 4.8153 26 6 2.4191 0.2366 2.6466 27 1 -0.3633 0.6381 0.8056 28 1 -0.3633 0.3787 -0.9554 29 1 -0.3633 -1.0167 0.1497 30 1 2.2896 -2.6637 0.9313 31 1 2.9024 -3.5578 3.1376 32 1 2.2958 2.2989 4.0706 33 1 4.0083 2.8179 6.2842 34 1 2.3271 2.6617 6.8476 35 1 -0.3125 2.7879 7.2216 36 1 2.8786 6.4057 6.3902 37 1 4.1057 5.1937 7.0434 38 1 4.7412 4.5577 4.6710 39 1 3.5142 5.7691 4.0168 40 1 2.2799 1.2982 2.5052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = -114.266809 kcal Electronic energy + Delta-G solvation = -27839.074366 eV Core-core repulsion = 23661.064842 eV Total energy + Delta-G solvation = -4178.009524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.19107 -41.14933 -39.55908 -38.43443 -38.13807 -36.97145 -35.05265 -34.19312 -32.63354 -32.12404 -30.20987 -28.09152 -27.34784 -25.09896 -24.24615 -23.00283 -21.79439 -21.24049 -20.07493 -19.45859 -18.45987 -18.26541 -17.98619 -17.30033 -17.19602 -16.95209 -16.70922 -16.58105 -16.25659 -15.93607 -15.77640 -15.29474 -14.79231 -14.59153 -14.48885 -14.21195 -14.01665 -13.88760 -13.75012 -13.55635 -13.42984 -13.13528 -13.09001 -12.81767 -12.75631 -12.66287 -12.31425 -12.18348 -12.07471 -11.79970 -11.50173 -11.12487 -10.94715 -10.67397 -10.47958 -10.36250 -10.15298 -9.78413 -8.02560 -6.21610 -0.91655 -0.63976 -0.31784 1.43398 1.46847 1.54081 1.55050 1.86310 2.19347 2.34910 2.43006 2.88335 2.99242 3.00182 3.10904 3.43454 3.54409 3.66096 3.88802 4.01217 4.15036 4.20249 4.21377 4.37345 4.48280 4.51635 4.65519 4.71568 4.74584 4.80155 4.81509 4.94184 5.03564 5.08209 5.25705 5.45909 5.50081 5.56807 5.65509 5.93589 6.35454 6.62529 6.83427 7.24294 7.43225 8.90791 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004589 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.116773 B = 6099.877065 C = 7211.049086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.512 3.488 3 O -0.973 6.973 4 O -0.957 6.957 5 C -0.679 4.679 6 C 0.036 3.964 7 C -0.168 4.168 8 C 0.182 3.818 9 F -0.126 7.126 10 C -0.205 4.205 11 C 0.537 3.463 12 O -0.586 6.586 13 N -0.679 5.679 14 C 0.163 3.837 15 C 0.007 3.993 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.032 3.968 19 N -0.897 5.897 20 Si 0.943 3.057 21 H -0.252 1.252 22 H -0.293 1.293 23 H -0.276 1.276 24 C -0.196 4.196 25 C -0.185 4.185 26 C 0.031 3.969 27 H 0.143 0.857 28 H 0.158 0.842 29 H 0.164 0.836 30 H 0.198 0.802 31 H 0.187 0.813 32 H 0.406 0.594 33 H 0.023 0.977 34 H 0.088 0.912 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 -12.062 -16.034 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.693 3.307 3 O -0.970 6.970 4 O -0.955 6.955 5 C -0.763 4.763 6 C 0.018 3.982 7 C -0.187 4.187 8 C 0.161 3.839 9 F -0.104 7.104 10 C -0.210 4.210 11 C 0.324 3.676 12 O -0.469 6.469 13 N -0.327 5.327 14 C 0.040 3.960 15 C 0.006 3.994 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.169 4.169 19 N -0.534 5.534 20 Si 0.768 3.232 21 H -0.176 1.176 22 H -0.219 1.219 23 H -0.201 1.201 24 C -0.234 4.234 25 C -0.222 4.222 26 C 0.011 3.989 27 H 0.161 0.839 28 H 0.176 0.824 29 H 0.182 0.818 30 H 0.215 0.785 31 H 0.204 0.796 32 H 0.243 0.757 33 H 0.041 0.959 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.479 -12.128 -15.658 19.861 hybrid contribution -1.046 0.296 1.255 1.661 sum -2.526 -11.832 -14.403 18.810 Atomic orbital electron populations 1.30102 1.19455 1.14782 1.14066 1.04940 0.79973 0.73227 0.72570 1.93583 1.79677 1.37957 1.85821 1.93551 1.79492 1.61939 1.60490 1.30928 1.19840 1.03305 1.22219 1.21475 0.86345 0.92985 0.97418 1.21640 1.04171 1.01984 0.90918 1.18429 0.93054 0.90956 0.81474 1.91578 1.88346 1.87637 1.42847 1.20223 1.11705 0.93279 0.95774 1.18431 0.78616 0.82965 0.87550 1.90749 1.49493 1.77416 1.29217 1.45687 1.61473 1.06158 1.19377 1.20917 0.96505 0.87875 0.90750 1.19263 0.92078 0.88554 0.99466 1.20714 0.89184 1.27390 1.16800 0.91875 1.25637 1.02217 0.95125 0.93958 1.69986 1.33384 1.31702 1.18287 0.85834 0.79742 0.78292 0.79294 1.17632 1.21936 1.20090 1.22932 1.04621 1.01409 0.94472 1.22945 0.99442 1.05051 0.94806 1.21119 0.87678 1.00873 0.89218 0.83871 0.82379 0.81788 0.78545 0.79585 0.75693 0.95904 0.89443 0.93174 0.90357 0.90858 0.89996 0.89376 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.96 10.80 113.37 1.22 -2.73 16 2 S 2.51 39.27 5.79 -56.49 -0.33 38.95 16 3 O -0.97 -24.30 17.12 -127.65 -2.19 -26.48 16 4 O -0.96 -18.32 17.11 -127.65 -2.18 -20.50 16 5 C -0.68 -12.94 5.65 22.23 0.13 -12.81 16 6 C 0.04 0.54 9.46 22.31 0.21 0.75 16 7 C -0.17 -3.09 10.01 22.28 0.22 -2.87 16 8 C 0.18 5.36 7.28 22.67 0.17 5.53 16 9 F -0.13 -4.43 15.57 44.97 0.70 -3.73 16 10 C -0.20 -6.85 5.88 -20.05 -0.12 -6.97 16 11 C 0.54 23.29 7.75 86.74 0.67 23.96 16 12 O -0.59 -29.90 15.37 -3.96 -0.06 -29.96 16 13 N -0.68 -29.50 5.38 -466.11 -2.51 -32.01 16 14 C 0.16 7.93 4.86 86.38 0.42 8.35 16 15 C 0.01 0.33 1.92 -52.92 -0.10 0.23 16 16 C -0.50 -24.99 8.52 25.60 0.22 -24.77 16 17 H 0.06 3.07 7.83 -2.91 -0.02 3.05 16 18 C 0.03 1.60 5.27 84.66 0.45 2.04 16 19 N -0.90 -48.56 10.62 21.45 0.23 -48.33 16 20 Si 0.94 39.13 29.55 68.60 2.03 41.16 16 21 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 24 C -0.20 -8.53 9.95 30.62 0.30 -8.23 16 25 C -0.19 -7.50 9.95 30.62 0.30 -7.19 16 26 C 0.03 0.81 8.93 22.52 0.20 1.01 16 27 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.20 1.30 7.56 -2.91 -0.02 1.28 16 31 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.41 16.12 6.22 -92.71 -0.58 15.54 16 33 H 0.02 1.11 8.11 -2.39 -0.02 1.09 16 34 H 0.09 4.92 5.69 -2.39 -0.01 4.90 16 35 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 36 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.16 4.05 5.99 -2.91 -0.02 4.04 16 Total: -1.00 -77.15 358.83 0.51 -76.64 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.52 Total: 27.98 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.30 Total: -23.70 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -2.28 Total: -80.34 kcal Atomic # 8 Polarization: -72.52 SS G_CDS: -4.43 Total: -76.95 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.70 Total: -3.73 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Atomic # 16 Polarization: 39.27 SS G_CDS: -0.33 Total: 38.95 kcal Total: -77.15 0.51 -76.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.628 kcal (2) G-P(sol) polarization free energy of solvation -77.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds