Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46796 * 2 1 4 4 C 1.52999 * 109.47347 * 120.00097 * 2 1 3 5 5 S 1.81406 * 109.46845 * 295.00045 * 4 2 1 6 6 C 1.76197 * 102.99679 * 180.02562 * 5 4 2 7 7 C 1.38935 * 120.05982 * 359.72502 * 6 5 4 8 8 C 1.38103 * 119.95053 * 179.72243 * 7 6 5 9 9 C 1.38474 * 120.04900 * 0.55231 * 8 7 6 10 10 F 1.35102 * 119.94259 * 179.69551 * 9 8 7 11 11 C 1.38477 * 120.11497 * 359.72612 * 9 8 7 12 12 C 1.38101 * 120.05388 * 359.97438 * 11 9 8 13 13 C 1.50702 * 109.47082 * 240.00353 * 2 1 3 14 14 O 1.21293 * 119.99376 * 252.93055 * 13 2 1 15 15 N 1.34771 * 120.00337 * 72.92737 * 13 2 1 16 16 C 1.37103 * 119.99837 * 5.74711 * 15 13 2 17 17 H 1.07999 * 120.00100 * 346.20177 * 16 15 13 18 18 C 1.38950 * 119.99746 * 166.19966 * 16 15 13 19 19 N 1.31405 * 120.00312 * 359.33756 * 18 16 15 20 20 Si 1.86805 * 119.99952 * 179.33401 * 18 16 15 21 21 H 1.48502 * 109.46903 * 59.99709 * 20 18 16 22 22 H 1.48496 * 109.47223 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47192 * 300.00434 * 20 18 16 24 24 C 1.46496 * 120.00330 * 185.74902 * 15 13 2 25 25 C 1.50703 * 109.47115 * 263.33804 * 24 15 13 26 26 O 1.20831 * 119.99838 * 0.02562 * 25 24 15 27 27 O 1.34221 * 120.00474 * 179.97438 * 25 24 15 28 28 H 1.08993 * 109.47788 * 55.10911 * 1 2 3 29 29 H 1.09006 * 109.47333 * 295.10690 * 1 2 3 30 30 H 1.09001 * 109.46866 * 175.11524 * 1 2 3 31 31 H 1.08994 * 109.47174 * 54.99666 * 4 2 1 32 32 H 1.08998 * 109.47089 * 175.00235 * 4 2 1 33 33 H 1.08010 * 120.02386 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.97439 * 180.25185 * 8 7 6 35 35 H 1.07998 * 119.97513 * 179.97438 * 11 9 8 36 36 H 1.07998 * 120.03071 * 179.97438 * 12 11 9 37 37 H 0.97007 * 120.00495 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.46840 * 23.33425 * 24 15 13 39 39 H 1.09002 * 109.47425 * 143.33964 * 24 15 13 40 40 H 0.96694 * 117.00596 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 1.5601 0.2156 2.7266 6 6 2.2235 -0.7512 4.0418 7 6 2.9116 -1.9257 3.7636 8 6 3.4357 -2.6787 4.7959 9 6 3.2658 -2.2700 6.1080 10 9 3.7741 -3.0115 7.1165 11 6 2.5754 -1.1028 6.3883 12 6 2.0549 -0.3430 5.3592 13 6 2.0323 -0.7103 -1.2305 14 8 2.5251 -1.8145 -1.1346 15 7 1.9339 -0.1189 -2.4375 16 6 1.4865 1.1736 -2.5331 17 1 1.0061 1.6427 -1.6871 18 6 1.6511 1.8799 -3.7183 19 7 2.2472 1.3136 -4.7433 20 14 1.0248 3.6345 -3.8546 21 1 1.6974 4.4807 -2.8363 22 1 1.3219 4.1622 -5.2105 23 1 -0.4422 3.6558 -3.6250 24 6 2.3049 -0.8568 -3.6474 25 6 3.7201 -0.5105 -4.0329 26 8 4.3538 0.2722 -3.3652 27 8 4.2769 -1.0721 -5.1174 28 1 -0.3634 0.5878 -0.8428 29 1 -0.3634 0.4361 0.9306 30 1 -0.3633 -1.0240 -0.0875 31 1 1.6054 -1.7197 1.2951 32 1 3.1263 -0.7994 1.2055 33 1 3.0409 -2.2470 2.7406 34 1 3.9741 -3.5897 4.5799 35 1 2.4439 -0.7863 7.4124 36 1 1.5161 0.5670 5.5782 37 1 2.3625 1.8068 -5.5706 38 1 2.2321 -1.9275 -3.4565 39 1 1.6304 -0.5858 -4.4596 40 1 5.1869 -0.8193 -5.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827580519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = -136.690364 kcal Electronic energy + Delta-G solvation = -26904.053798 eV Core-core repulsion = 22725.071915 eV Total energy + Delta-G solvation = -4178.981883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.01780 -39.51099 -38.91232 -38.34164 -35.38750 -34.47196 -33.97028 -31.65749 -31.38930 -30.69835 -28.12916 -26.91988 -25.04992 -23.37885 -22.90586 -22.45866 -20.47500 -19.25107 -18.09465 -17.35570 -17.12972 -16.91002 -16.56408 -16.30255 -15.72837 -15.49895 -14.96676 -14.71144 -14.63887 -14.39612 -14.28978 -13.98831 -13.77081 -13.46802 -13.36693 -12.95695 -12.89626 -12.48077 -12.00511 -11.86902 -11.76147 -11.57696 -11.31959 -11.27954 -11.16188 -10.90326 -10.75435 -10.54719 -10.45706 -10.24398 -10.07969 -9.63759 -9.58652 -9.34455 -9.09585 -8.67455 -8.13534 -7.34150 -6.55744 -4.13907 0.85720 1.02312 1.50432 2.46028 3.02544 3.11745 3.13121 3.32984 3.51974 3.76882 3.95754 4.10517 4.23561 4.52079 4.64735 4.66493 4.99219 5.01345 5.04681 5.16576 5.23282 5.52284 5.58652 5.67436 5.82708 5.92001 5.94482 5.97891 6.02326 6.04478 6.20341 6.37809 6.45410 6.60670 6.62939 6.68954 6.81830 7.20576 7.45366 7.70714 8.12325 8.85625 9.19083 9.28975 9.60411 10.46822 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002786 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.782603 B =10047.588361 C =11156.306516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.101 0.899 4 C -0.080 4.080 5 S -0.106 6.106 6 C -0.090 4.090 7 C -0.105 4.105 8 C -0.131 4.131 9 C 0.083 3.917 10 F -0.143 7.143 11 C -0.136 4.136 12 C -0.077 4.077 13 C 0.475 3.525 14 O -0.604 6.604 15 N -0.426 5.426 16 C -0.321 4.321 17 H 0.109 0.891 18 C 0.038 3.962 19 N -0.888 5.888 20 Si 0.937 3.063 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.159 3.841 25 C 0.509 3.491 26 O -0.526 6.526 27 O -0.536 6.536 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.275 0.725 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -2.740 11.897 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.119 0.881 4 C -0.229 4.229 5 S 0.141 5.859 6 C -0.203 4.203 7 C -0.129 4.129 8 C -0.152 4.152 9 C 0.061 3.939 10 F -0.121 7.121 11 C -0.157 4.157 12 C -0.101 4.101 13 C 0.262 3.738 14 O -0.490 6.490 15 N -0.144 5.144 16 C -0.448 4.448 17 H 0.126 0.874 18 C -0.164 4.164 19 N -0.530 5.530 20 Si 0.763 3.237 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.034 3.966 25 C 0.351 3.649 26 O -0.413 6.413 27 O -0.346 6.346 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.152 0.848 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.977 -2.034 11.954 12.486 hybrid contribution 1.384 -0.077 -0.314 1.421 sum -1.593 -2.111 11.640 11.937 Atomic orbital electron populations 1.21853 0.92894 1.02665 1.02915 1.20734 0.97614 1.00852 0.90784 0.88092 1.23591 1.04934 1.01471 0.92883 1.85418 1.69226 1.33964 0.97292 1.21978 1.02036 0.98579 0.97730 1.21227 0.97743 0.93876 1.00081 1.21068 1.01838 1.01436 0.90833 1.17672 0.99535 0.92040 0.84699 1.91488 1.85355 1.75972 1.59309 1.21031 0.99776 0.94385 1.00467 1.20620 0.99676 0.99890 0.89883 1.19800 0.82876 0.86950 0.84171 1.90544 1.50139 1.22283 1.86060 1.43363 1.55030 1.12840 1.03188 1.19803 1.36523 0.87787 1.00653 0.87356 1.25233 0.95766 1.00283 0.95145 1.69464 1.41659 1.37753 1.04102 0.85821 0.78935 0.81084 0.77866 1.19656 1.20764 1.19632 1.20644 0.90806 0.94912 0.90270 1.23442 0.88814 0.76654 0.75990 1.90541 1.63638 1.33489 1.53681 1.84518 1.33502 1.68542 1.48029 0.90322 0.91854 0.92562 0.88708 0.88958 0.84290 0.84467 0.84440 0.84489 0.91362 0.90606 0.84838 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.81 37.16 0.33 -1.95 16 2 C -0.08 -1.39 1.87 -91.77 -0.17 -1.57 16 3 H 0.10 1.89 7.15 -51.93 -0.37 1.51 16 4 C -0.08 -1.27 3.08 37.16 0.11 -1.16 16 5 S -0.11 -1.44 20.65 -107.50 -2.22 -3.66 16 6 C -0.09 -1.14 6.11 -39.06 -0.24 -1.38 16 7 C -0.11 -1.31 9.36 -39.37 -0.37 -1.68 16 8 C -0.13 -1.50 10.02 -39.54 -0.40 -1.90 16 9 C 0.08 0.94 7.30 -39.41 -0.29 0.65 16 10 F -0.14 -1.67 17.26 2.25 0.04 -1.63 16 11 C -0.14 -1.39 10.02 -39.54 -0.40 -1.78 16 12 C -0.08 -0.83 9.79 -39.37 -0.39 -1.22 16 13 C 0.47 10.66 6.86 -10.99 -0.08 10.59 16 14 O -0.60 -14.75 15.60 5.55 0.09 -14.67 16 15 N -0.43 -10.10 2.18 -116.09 -0.25 -10.35 16 16 C -0.32 -7.55 8.40 -14.93 -0.13 -7.67 16 17 H 0.11 2.34 5.06 -52.49 -0.27 2.07 16 18 C 0.04 0.90 5.26 -17.47 -0.09 0.80 16 19 N -0.89 -21.87 7.74 55.50 0.43 -21.44 16 20 Si 0.94 18.84 29.55 -169.99 -5.02 13.82 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 C 0.16 3.70 5.35 -5.19 -0.03 3.67 16 25 C 0.51 12.24 6.01 36.01 0.22 12.46 16 26 O -0.53 -14.36 16.54 -18.75 -0.31 -14.67 16 27 O -0.54 -10.74 13.42 -39.23 -0.53 -11.27 16 28 H 0.08 1.28 6.39 -51.93 -0.33 0.95 16 29 H 0.06 0.87 6.98 -51.93 -0.36 0.50 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.48 7.70 -51.93 -0.40 1.08 16 32 H 0.09 1.55 7.75 -51.93 -0.40 1.15 16 33 H 0.14 1.76 5.88 -52.48 -0.31 1.45 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 38 H 0.08 1.68 7.31 -51.93 -0.38 1.30 16 39 H 0.13 3.12 6.36 -51.93 -0.33 2.79 16 40 H 0.39 6.09 9.10 45.56 0.41 6.50 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -29.70 352.81 -7.93 -37.63 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.56 Total: 13.05 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.91 Total: 7.87 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.18 Total: -31.80 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.75 Total: -40.61 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.22 Total: -3.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.70 -7.93 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827580519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.060 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds