Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46806 * 2 1 4 4 C 1.52995 * 109.47061 * 239.99908 * 2 1 3 5 5 S 1.81403 * 109.47247 * 65.00158 * 4 2 1 6 6 C 1.76191 * 103.00162 * 179.97438 * 5 4 2 7 7 C 1.38945 * 120.05593 * 359.72733 * 6 5 4 8 8 C 1.38096 * 119.94308 * 179.71999 * 7 6 5 9 9 C 1.38483 * 120.05651 * 0.55280 * 8 7 6 10 10 F 1.35094 * 119.94521 * 179.70082 * 9 8 7 11 11 C 1.38480 * 120.10818 * 359.71993 * 9 8 7 12 12 C 1.38094 * 120.05409 * 0.02562 * 11 9 8 13 13 C 1.50693 * 109.46840 * 119.99946 * 2 1 3 14 14 O 1.21299 * 120.00230 * 99.50358 * 13 2 1 15 15 N 1.34780 * 120.00293 * 279.50079 * 13 2 1 16 16 C 1.37100 * 119.99862 * 355.10319 * 15 13 2 17 17 H 1.07996 * 119.99801 * 350.50611 * 16 15 13 18 18 C 1.38947 * 120.00065 * 170.22320 * 16 15 13 19 19 N 1.31420 * 120.00048 * 338.99838 * 18 16 15 20 20 Si 1.86799 * 120.00012 * 158.99015 * 18 16 15 21 21 H 1.48505 * 109.46873 * 90.00379 * 20 18 16 22 22 H 1.48501 * 109.46946 * 210.00150 * 20 18 16 23 23 H 1.48493 * 109.47196 * 330.00638 * 20 18 16 24 24 C 1.46501 * 120.00042 * 175.10506 * 15 13 2 25 25 C 1.50703 * 109.47161 * 273.12132 * 24 15 13 26 26 O 1.20825 * 119.99938 * 0.02562 * 25 24 15 27 27 O 1.34228 * 119.99659 * 179.97438 * 25 24 15 28 28 H 1.09004 * 109.47314 * 175.84528 * 1 2 3 29 29 H 1.09000 * 109.47501 * 295.84049 * 1 2 3 30 30 H 1.08994 * 109.47317 * 55.84399 * 1 2 3 31 31 H 1.08997 * 109.47036 * 185.00060 * 4 2 1 32 32 H 1.08998 * 109.47608 * 305.00072 * 4 2 1 33 33 H 1.07995 * 120.02346 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.97157 * 180.25627 * 8 7 6 35 35 H 1.08004 * 119.97059 * 179.97438 * 11 9 8 36 36 H 1.08002 * 120.02310 * 179.97438 * 12 11 9 37 37 H 0.96994 * 119.99773 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.47175 * 33.12742 * 24 15 13 39 39 H 1.09005 * 109.47261 * 153.12533 * 24 15 13 40 40 H 0.96706 * 116.99566 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5601 0.2156 -2.7266 6 6 2.2234 -0.7512 -4.0418 7 6 2.9213 -1.9198 -3.7630 8 6 3.4353 -2.6789 -4.7959 9 6 3.2654 -2.2701 -6.1081 10 9 3.7743 -3.0112 -7.1165 11 6 2.5751 -1.1028 -6.3882 12 6 2.0548 -0.3431 -5.3591 13 6 2.0322 -0.7104 1.2304 14 8 2.3979 -1.8646 1.1576 15 7 2.0752 -0.0632 2.4119 16 6 1.7578 1.2690 2.4757 17 1 1.6233 1.8362 1.5666 18 6 1.6034 1.8881 3.7100 19 7 1.3495 1.1675 4.7794 20 14 1.7571 3.7445 3.8495 21 1 0.4242 4.3679 3.6488 22 1 2.2714 4.0987 5.1969 23 1 2.6975 4.2426 2.8139 24 6 2.4611 -0.7834 3.6279 25 6 1.2436 -1.4301 4.2366 26 8 0.1643 -1.3029 3.7085 27 8 1.3583 -2.1482 5.3648 28 1 -0.3634 -1.0250 -0.0745 29 1 -0.3634 0.4479 0.9249 30 1 -0.3633 0.5769 -0.8503 31 1 3.1263 -0.7995 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 3.0582 -2.2364 -2.7396 34 1 3.9742 -3.5895 -4.5799 35 1 2.4443 -0.7859 -7.4124 36 1 1.5168 0.5675 -5.5782 37 1 1.2413 1.5998 5.6409 38 1 3.1939 -1.5508 3.3787 39 1 2.8961 -0.0839 4.3419 40 1 0.5496 -2.5442 5.7173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827580522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -154.876593 kcal Electronic energy + Delta-G solvation = -26880.979738 eV Core-core repulsion = 22701.209242 eV Total energy + Delta-G solvation = -4179.770497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.90701 -41.33606 -40.17361 -39.78371 -37.14707 -36.46589 -35.45923 -33.49088 -32.27472 -31.59169 -29.89389 -28.29410 -26.81991 -24.63178 -23.84827 -23.72828 -22.23037 -20.94521 -19.12302 -18.87333 -18.60782 -18.44559 -18.06941 -17.35674 -17.28272 -16.61506 -16.47806 -16.33159 -16.17899 -15.90213 -15.56672 -15.39847 -14.99481 -14.61023 -14.48570 -14.35843 -14.05719 -13.83231 -13.52690 -13.48019 -13.33567 -13.06417 -12.87789 -12.61192 -12.58711 -12.31781 -12.19193 -12.12596 -12.09498 -11.93426 -11.57166 -11.22883 -10.95222 -10.58013 -10.39790 -10.19449 -9.96687 -8.40388 -8.36693 -5.91393 -0.04476 0.17175 0.41150 1.34986 1.40812 1.51665 1.62871 1.70784 1.82625 2.27222 2.45512 2.52554 2.89330 3.15459 3.23975 3.66404 3.69380 3.85400 3.87610 4.09354 4.18385 4.30046 4.35179 4.50270 4.55998 4.62630 4.68463 4.80402 4.85351 4.86479 4.94846 5.05190 5.07841 5.10810 5.16232 5.31307 5.46256 5.63862 5.78028 5.89508 6.30597 7.05155 7.34320 7.45044 7.83004 8.66072 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002745 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.966609 B =10196.509206 C =11257.489463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 H 0.105 0.895 4 C -0.077 4.077 5 S -0.089 6.089 6 C -0.106 4.106 7 C -0.117 4.117 8 C -0.136 4.136 9 C 0.075 3.925 10 F -0.145 7.145 11 C -0.128 4.128 12 C -0.074 4.074 13 C 0.463 3.537 14 O -0.631 6.631 15 N -0.434 5.434 16 C -0.348 4.348 17 H 0.120 0.880 18 C -0.002 4.002 19 N -0.898 5.898 20 Si 0.991 3.009 21 H -0.279 1.279 22 H -0.282 1.282 23 H -0.256 1.256 24 C 0.146 3.854 25 C 0.503 3.497 26 O -0.552 6.552 27 O -0.521 6.521 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.274 0.726 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -0.417 -13.707 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.092 4.092 3 H 0.123 0.877 4 C -0.226 4.226 5 S 0.157 5.843 6 C -0.220 4.220 7 C -0.141 4.141 8 C -0.156 4.156 9 C 0.053 3.947 10 F -0.123 7.123 11 C -0.148 4.148 12 C -0.098 4.098 13 C 0.252 3.748 14 O -0.519 6.519 15 N -0.151 5.151 16 C -0.474 4.474 17 H 0.137 0.863 18 C -0.204 4.204 19 N -0.537 5.537 20 Si 0.815 3.185 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.179 1.179 24 C 0.020 3.980 25 C 0.346 3.654 26 O -0.442 6.442 27 O -0.333 6.333 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 1.985 0.330 -13.762 13.908 hybrid contribution 0.085 -1.074 0.967 1.448 sum 2.070 -0.744 -12.794 12.982 Atomic orbital electron populations 1.21590 0.92087 1.01858 1.02777 1.20711 0.98144 1.00470 0.89877 0.87659 1.23406 1.04248 1.01413 0.93509 1.85257 1.69770 1.33115 0.96157 1.22086 1.02804 0.98966 0.98107 1.21212 0.98492 0.94358 1.00050 1.21212 1.01867 1.01724 0.90809 1.17857 0.99752 0.92490 0.84583 1.91483 1.85382 1.76159 1.59317 1.21327 0.98347 0.93442 1.01715 1.20871 0.99310 1.00543 0.89068 1.20553 0.81979 0.86238 0.85985 1.90502 1.55253 1.19183 1.86986 1.43651 1.57497 1.09575 1.04400 1.20102 1.49017 0.82926 0.95364 0.86298 1.26018 0.95049 1.04659 0.94656 1.69926 1.44805 1.38104 1.00901 0.84955 0.78623 0.76929 0.78036 1.20542 1.20708 1.17947 1.20689 0.91667 0.96682 0.88954 1.23801 0.91582 0.72863 0.77161 1.90535 1.30889 1.59332 1.63411 1.84460 1.43893 1.63870 1.41102 0.93599 0.93016 0.89310 0.89423 0.89597 0.85086 0.83237 0.81641 0.82451 0.91616 0.89412 0.85120 0.72851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.88 71.98 0.64 -3.85 16 2 C -0.07 -2.57 1.93 -11.54 -0.02 -2.59 16 3 H 0.11 3.73 6.41 -2.39 -0.02 3.71 16 4 C -0.08 -2.42 3.16 71.98 0.23 -2.20 16 5 S -0.09 -2.29 20.81 -56.49 -1.18 -3.46 16 6 C -0.11 -2.51 6.11 22.61 0.14 -2.37 16 7 C -0.12 -2.79 9.36 22.41 0.21 -2.58 16 8 C -0.14 -2.89 10.02 22.29 0.22 -2.67 16 9 C 0.08 1.54 7.30 22.39 0.16 1.70 16 10 F -0.14 -3.07 17.26 44.97 0.78 -2.30 16 11 C -0.13 -2.22 10.02 22.29 0.22 -1.99 16 12 C -0.07 -1.40 9.79 22.40 0.22 -1.18 16 13 C 0.46 21.30 6.70 87.65 0.59 21.89 16 14 O -0.63 -31.57 15.74 -3.09 -0.05 -31.62 16 15 N -0.43 -20.82 2.14 -639.59 -1.37 -22.18 16 16 C -0.35 -16.35 8.64 84.04 0.73 -15.62 16 17 H 0.12 5.17 5.92 -2.91 -0.02 5.16 16 18 C 0.00 -0.11 4.99 84.92 0.42 0.31 16 19 N -0.90 -44.12 9.08 21.66 0.20 -43.92 16 20 Si 0.99 37.08 29.60 68.60 2.03 39.11 16 21 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 24 C 0.15 6.82 5.23 85.63 0.45 7.26 16 25 C 0.50 23.87 6.57 71.24 0.47 24.34 16 26 O -0.55 -29.78 17.07 21.97 0.38 -29.41 16 27 O -0.52 -19.99 13.42 -51.40 -0.69 -20.68 16 28 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.05 2.13 7.57 -2.39 -0.02 2.11 16 30 H 0.09 2.62 7.28 -2.39 -0.02 2.60 16 31 H 0.09 2.77 7.73 -2.39 -0.02 2.75 16 32 H 0.09 2.84 7.67 -2.39 -0.02 2.82 16 33 H 0.13 3.27 5.88 -2.91 -0.02 3.26 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 38 H 0.09 3.91 7.45 -2.39 -0.02 3.89 16 39 H 0.13 6.14 6.03 -2.38 -0.01 6.13 16 40 H 0.41 11.92 9.10 -74.05 -0.67 11.24 16 Total: -1.00 -62.95 356.81 5.20 -57.75 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.43 Total: 36.27 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 4.67 Total: 20.44 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -1.17 Total: -66.11 kcal Atomic # 8 Polarization: -81.35 SS G_CDS: -0.36 Total: -81.71 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -1.18 Total: -3.46 kcal Total: -62.95 5.20 -57.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827580522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.128 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds