Wall clock time and date at job start Sat Apr 11 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00408 * 2 1 4 4 C 1.52990 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47354 * 64.99567 * 4 3 2 6 6 C 1.36935 * 120.00427 * 270.00291 * 5 4 3 7 7 H 1.08000 * 120.00178 * 145.32760 * 6 5 4 8 8 C 1.38818 * 119.99908 * 325.32418 * 6 5 4 9 9 N 1.31617 * 119.99528 * 337.29741 * 8 6 5 10 10 Si 1.86794 * 120.00032 * 157.29172 * 8 6 5 11 11 H 1.48495 * 109.47401 * 90.00498 * 10 8 6 12 12 H 1.48505 * 109.47073 * 210.00261 * 10 8 6 13 13 H 1.48500 * 109.47342 * 330.00202 * 10 8 6 14 14 C 1.46502 * 119.99983 * 89.99845 * 5 4 3 15 15 C 1.50701 * 109.47051 * 95.31762 * 14 5 4 16 16 C 1.35455 * 126.05367 * 87.38462 * 15 14 5 17 17 Cl 1.73599 * 126.14103 * 0.02562 * 16 15 14 18 18 N 1.34982 * 107.72047 * 180.02562 * 16 15 14 19 19 C 1.46499 * 126.04224 * 179.97438 * 18 16 15 20 20 N 1.40084 * 107.92462 * 359.97438 * 18 16 15 21 21 C 1.30828 * 108.23596 * 359.71608 * 20 18 16 22 22 C 1.50704 * 125.89225 * 180.25378 * 21 20 18 23 23 F 1.39902 * 109.47165 * 270.22050 * 22 21 20 24 24 F 1.39908 * 109.47017 * 30.21674 * 22 21 20 25 25 F 1.39891 * 109.47243 * 150.21793 * 22 21 20 26 26 H 1.09004 * 109.46647 * 300.00184 * 1 2 3 27 27 H 1.08999 * 109.47123 * 60.00091 * 1 2 3 28 28 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47044 * 59.99721 * 3 2 1 30 30 H 1.09006 * 109.46306 * 300.00048 * 3 2 1 31 31 H 1.08999 * 109.47077 * 304.99541 * 4 3 2 32 32 H 1.09003 * 109.47336 * 184.99538 * 4 3 2 33 33 H 0.97007 * 119.99719 * 185.03358 * 9 8 6 34 34 H 1.08999 * 109.47418 * 215.31744 * 14 5 4 35 35 H 1.09000 * 109.47021 * 335.31738 * 14 5 4 36 36 H 1.09007 * 109.47373 * 89.99352 * 19 18 16 37 37 H 1.09000 * 109.47484 * 209.99852 * 19 18 16 38 38 H 1.09006 * 109.46533 * 329.99673 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0967 -0.7971 -1.3368 7 1 3.8660 -1.3036 -2.2624 8 6 4.5160 -1.5262 -0.2324 9 7 5.2089 -0.9384 0.7197 10 14 4.0966 -3.3415 -0.0977 11 1 5.1740 -4.1466 -0.7270 12 1 3.9711 -3.7156 1.3340 13 1 2.8111 -3.6055 -0.7927 14 6 4.2863 1.4005 -2.4148 15 6 5.7680 1.6727 -2.4560 16 6 6.7061 0.8915 -3.0429 17 17 6.4170 -0.6006 -3.8818 18 7 7.9061 1.4814 -2.8584 19 6 9.1971 0.9752 -3.3307 20 7 7.6988 2.6633 -2.1355 21 6 6.4171 2.7801 -1.9006 22 6 5.7549 3.9104 -1.1555 23 9 5.7018 3.6021 0.2081 24 9 6.4917 5.0853 -1.3396 25 9 4.4565 4.0929 -1.6432 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8514 0.5682 0.8410 32 1 3.9786 2.1765 0.0888 33 1 5.5644 -1.4621 1.4548 34 1 3.9867 0.8824 -3.3258 35 1 3.7455 2.3438 -2.3387 36 1 9.3983 1.3669 -4.3279 37 1 9.9847 1.2958 -2.6487 38 1 9.1690 -0.1139 -3.3670 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835067310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:00 Heat of formation + Delta-G solvation = -103.221873 kcal Electronic energy + Delta-G solvation = -29756.440857 eV Core-core repulsion = 25054.929792 eV Total energy + Delta-G solvation = -4701.511065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.24221 -48.76133 -48.70896 -42.49739 -38.75490 -37.77999 -37.08331 -34.85919 -33.34677 -31.91886 -30.12196 -29.42993 -27.55182 -27.03443 -25.74058 -24.48269 -22.65479 -22.14572 -21.47097 -19.59282 -19.32222 -19.05905 -18.36436 -17.47552 -17.21718 -16.86187 -16.61421 -16.37684 -15.91963 -15.62194 -15.53457 -15.40411 -15.21179 -15.09104 -14.94766 -14.88141 -14.82417 -14.73333 -13.79559 -13.71175 -13.52577 -13.31985 -13.06082 -12.97824 -12.82245 -12.69373 -12.45686 -12.34022 -12.26119 -11.97057 -11.83939 -11.63477 -11.42825 -10.52823 -10.36731 -10.26024 -9.54151 -8.41867 -7.66222 -5.15488 0.28428 0.45736 1.11604 1.21323 1.47133 1.53721 1.61587 1.87777 2.59777 2.64277 2.91037 3.27020 3.33407 3.49827 3.66990 3.84758 4.07806 4.32342 4.37335 4.41250 4.50162 4.56568 4.60725 4.70270 4.80326 4.87069 4.90474 4.99200 5.04597 5.14008 5.17251 5.58443 5.84694 5.95032 6.11457 6.56179 6.75800 7.32861 8.02072 8.52672 9.34644 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010156 B = 0.006512 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.294292 B = 4298.995521 C = 5993.998910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.056 3.944 4 C 0.139 3.861 5 N -0.573 5.573 6 C -0.208 4.208 7 H 0.055 0.945 8 C -0.022 4.022 9 N -0.918 5.918 10 Si 0.932 3.068 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.277 1.277 14 C 0.196 3.804 15 C -0.178 4.178 16 C 0.131 3.869 17 Cl 0.023 6.977 18 N -0.347 5.347 19 C 0.084 3.916 20 N -0.245 5.245 21 C -0.025 4.025 22 C 0.564 3.436 23 F -0.171 7.171 24 F -0.168 7.168 25 F -0.157 7.157 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.243 0.757 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 7.173 -8.446 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C -0.023 4.023 4 C 0.012 3.988 5 N -0.291 5.291 6 C -0.339 4.339 7 H 0.073 0.927 8 C -0.218 4.218 9 N -0.564 5.564 10 Si 0.764 3.236 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.202 1.202 14 C 0.069 3.931 15 C -0.193 4.193 16 C -0.023 4.023 17 Cl 0.051 6.949 18 N -0.134 5.134 19 C -0.055 4.055 20 N -0.072 5.072 21 C -0.190 4.190 22 C 0.507 3.493 23 F -0.152 7.152 24 F -0.149 7.149 25 F -0.138 7.138 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.175 7.284 -8.233 11.442 hybrid contribution -0.914 -1.307 0.492 1.669 sum 2.262 5.976 -7.741 10.038 Atomic orbital electron populations 1.22806 0.81767 1.02472 0.99998 1.88141 1.19410 1.28574 1.95168 1.23205 0.96661 0.84035 0.98382 1.21015 0.89679 0.96302 0.91765 1.44015 1.73883 1.02322 1.08890 1.18862 1.35785 0.82125 0.97144 0.92701 1.25354 0.98238 0.99302 0.98913 1.69999 1.37062 1.35132 1.14253 0.85808 0.78185 0.83738 0.75908 1.21730 1.23066 1.20200 1.19805 0.85648 0.95686 0.92000 1.20829 1.01012 0.93750 1.03692 1.21358 0.87021 0.91391 1.02505 1.98393 1.94988 1.27216 1.74326 1.48883 1.07339 1.15897 1.41267 1.22448 0.79565 1.01080 1.02383 1.77204 1.14913 1.01841 1.13219 1.21772 0.93425 0.98316 1.05473 1.16718 0.76285 0.79668 0.76584 1.93248 1.96128 1.92889 1.32927 1.93206 1.76969 1.49684 1.95024 1.93156 1.37779 1.95210 1.87643 0.93794 0.93724 0.90110 0.93900 0.93955 0.91071 0.93701 0.94797 0.91991 0.90555 0.87192 0.87390 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.39 -16.95 10.18 -148.98 -1.52 -18.46 16 3 C 0.06 2.21 6.28 71.98 0.45 2.66 16 4 C 0.14 6.42 5.70 86.38 0.49 6.91 16 5 N -0.57 -26.80 2.42 -706.36 -1.71 -28.51 16 6 C -0.21 -10.69 8.97 84.04 0.75 -9.94 16 7 H 0.06 2.84 7.93 -2.91 -0.02 2.82 16 8 C -0.02 -1.20 4.95 84.86 0.42 -0.78 16 9 N -0.92 -53.14 11.34 21.65 0.25 -52.90 16 10 Si 0.93 45.52 29.61 68.60 2.03 47.55 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 14 C 0.20 7.80 5.73 85.63 0.49 8.29 16 15 C -0.18 -7.00 5.61 -20.11 -0.11 -7.11 16 16 C 0.13 4.77 7.45 83.56 0.62 5.39 16 17 Cl 0.02 0.75 28.39 -2.72 -0.08 0.67 16 18 N -0.35 -11.30 4.01 -359.26 -1.44 -12.74 16 19 C 0.08 1.74 11.31 127.77 1.44 3.19 16 20 N -0.24 -8.95 12.51 -47.39 -0.59 -9.54 16 21 C -0.03 -0.96 6.56 43.10 0.28 -0.67 16 22 C 0.56 19.73 3.28 71.24 0.23 19.96 16 23 F -0.17 -6.55 15.63 44.97 0.70 -5.84 16 24 F -0.17 -5.38 17.25 44.97 0.78 -4.60 16 25 F -0.16 -5.07 14.47 44.97 0.65 -4.42 16 26 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 3.92 5.35 -2.39 -0.01 3.91 16 32 H 0.04 1.98 5.90 -2.39 -0.01 1.97 16 33 H 0.24 13.97 8.32 -92.70 -0.77 13.20 16 34 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 35 H 0.08 2.79 5.56 -2.39 -0.01 2.78 16 36 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.10 1.93 7.81 -2.38 -0.02 1.91 16 Total: -1.00 -65.29 349.77 6.51 -58.78 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 1.11 Total: 0.03 kcal Atomic # 6 Polarization: 23.65 SS G_CDS: 6.33 Total: 29.98 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -3.50 Total: -103.69 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.52 Total: -18.46 kcal Atomic # 9 Polarization: -16.99 SS G_CDS: 2.13 Total: -14.86 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -65.29 6.51 -58.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.441 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds