Wall clock time and date at job start Sat Apr 11 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47167 * 2 1 4 4 C 1.50698 * 109.47091 * 239.99890 * 2 1 3 5 5 H 1.07996 * 119.99965 * 245.12492 * 4 2 1 6 6 C 1.37881 * 119.99838 * 65.12466 * 4 2 1 7 7 N 1.31511 * 119.99748 * 5.06489 * 6 4 2 8 8 Si 1.86794 * 119.99872 * 185.06803 * 6 4 2 9 9 H 1.48501 * 109.47534 * 94.99786 * 8 6 4 10 10 H 1.48502 * 109.47012 * 214.99944 * 8 6 4 11 11 H 1.48507 * 109.47411 * 334.99792 * 8 6 4 12 12 N 1.46902 * 109.47256 * 119.99994 * 2 1 3 13 13 C 1.46902 * 110.99969 * 58.95242 * 12 2 1 14 14 C 1.46905 * 111.00069 * 295.00125 * 12 2 1 15 15 C 1.50691 * 109.47203 * 190.00000 * 14 12 2 16 16 O 1.21284 * 120.00314 * 359.97438 * 15 14 12 17 17 N 1.34781 * 120.00091 * 180.02562 * 15 14 12 18 18 C 1.39925 * 120.00114 * 185.61644 * 17 15 14 19 19 C 1.38871 * 120.06454 * 25.23531 * 18 17 15 20 20 C 1.38212 * 119.91751 * 179.79523 * 19 18 17 21 21 Cl 1.73592 * 119.97858 * 180.25828 * 20 19 18 22 22 C 1.38419 * 120.03730 * 0.48723 * 20 19 18 23 23 C 1.38233 * 120.13432 * 359.74758 * 22 20 19 24 24 C 1.38147 * 120.08340 * 0.02562 * 23 22 20 25 25 N 1.48016 * 120.02099 * 179.97438 * 24 23 22 26 26 O 1.21796 * 120.00196 * 5.34988 * 25 24 23 27 27 O 1.21805 * 119.99687 * 185.34577 * 25 24 23 28 28 H 1.09006 * 109.47062 * 294.95518 * 1 2 3 29 29 H 1.08999 * 109.47173 * 54.95268 * 1 2 3 30 30 H 1.08993 * 109.47058 * 174.95582 * 1 2 3 31 31 H 0.97008 * 119.99665 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47119 * 60.00189 * 13 12 2 33 33 H 1.08994 * 109.47253 * 180.02562 * 13 12 2 34 34 H 1.09005 * 109.47084 * 300.00282 * 13 12 2 35 35 H 1.09001 * 109.46665 * 310.00190 * 14 12 2 36 36 H 1.09000 * 109.46922 * 69.99501 * 14 12 2 37 37 H 0.96997 * 119.99847 * 5.60932 * 17 15 14 38 38 H 1.08001 * 120.04387 * 0.02562 * 19 18 17 39 39 H 1.08010 * 119.93033 * 179.72404 * 22 20 19 40 40 H 1.08005 * 119.95846 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5832 -1.6342 -1.1335 6 6 1.7886 -0.1810 -2.4800 7 7 1.2059 0.9924 -2.5946 8 14 2.2859 -1.1304 -4.0099 9 1 1.1258 -1.9139 -4.5052 10 1 2.7260 -0.1788 -5.0616 11 1 3.4014 -2.0532 -3.6790 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0391 2.4181 15 6 2.3679 -0.5571 3.6005 16 8 3.1156 -1.4991 3.4437 17 7 2.1796 -0.0442 4.8326 18 6 2.9341 -0.5191 5.9110 19 6 4.1803 -1.0906 5.6901 20 6 4.9249 -1.5549 6.7579 21 17 6.4858 -2.2635 6.4842 22 6 4.4246 -1.4595 8.0450 23 6 3.1822 -0.8954 8.2666 24 6 2.4355 -0.4253 7.2036 25 7 1.1052 0.1780 7.4424 26 8 0.7098 0.3493 8.5816 27 8 0.4059 0.5031 6.4996 28 1 -0.3633 0.4336 0.9318 29 1 -0.3633 0.5901 -0.8413 30 1 -0.3633 -1.0236 -0.0904 31 1 1.0347 1.3651 -3.4737 32 1 1.8762 -2.6150 0.3648 33 1 1.9053 -2.5655 2.1439 34 1 0.4384 -2.0742 1.2639 35 1 1.9298 1.0870 2.3125 36 1 0.5723 -0.0345 2.5726 37 1 1.5210 0.6542 4.9717 38 1 4.5689 -1.1689 4.6854 39 1 5.0060 -1.8269 8.8778 40 1 2.7944 -0.8227 9.2720 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839504069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:03 Heat of formation + Delta-G solvation = 9.609964 kcal Electronic energy + Delta-G solvation = -27268.017354 eV Core-core repulsion = 23113.255785 eV Total energy + Delta-G solvation = -4154.761569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.64963 -40.89904 -39.25223 -37.29759 -37.00761 -36.75067 -35.02729 -32.75662 -32.15304 -30.99681 -29.18080 -27.67532 -26.62192 -25.20749 -24.57162 -23.59189 -22.86433 -20.86528 -19.63800 -19.38397 -19.00864 -18.22998 -17.85696 -17.37517 -16.28710 -16.10777 -15.96297 -15.45400 -14.98574 -14.66014 -14.37441 -14.12605 -14.10474 -13.58984 -13.35603 -12.89483 -12.74900 -12.59269 -12.35432 -11.87709 -11.74942 -11.59591 -11.51947 -11.45335 -11.16445 -11.14359 -10.94700 -10.91683 -10.81524 -10.54018 -10.21742 -10.04916 -9.78889 -9.56030 -8.97589 -8.87315 -8.42942 -7.30522 -6.07654 -4.08429 -0.61234 0.42221 0.87712 0.98722 1.42677 2.33439 2.51293 2.85214 3.29218 3.36482 3.40907 3.77249 4.16689 4.22567 4.32393 4.39966 4.66442 4.93573 4.99469 5.05222 5.20634 5.27522 5.43338 5.56341 5.58879 5.70243 5.96181 6.10166 6.22763 6.33336 6.57168 6.69312 6.85680 6.95232 6.96384 7.29612 7.32980 7.52373 7.76515 7.88339 8.01252 8.22339 8.47869 8.96819 9.55861 11.02061 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.002839 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.938403 B = 9861.484957 C =11522.009659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.516 5.516 13 C 0.028 3.972 14 C 0.037 3.963 15 C 0.517 3.483 16 O -0.485 6.485 17 N -0.670 5.670 18 C 0.255 3.745 19 C -0.136 4.136 20 C 0.037 3.963 21 Cl -0.034 7.034 22 C -0.141 4.141 23 C -0.020 4.020 24 C -0.092 4.092 25 N 0.042 4.958 26 O -0.148 6.148 27 O -0.180 6.180 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.428 0.572 38 H 0.182 0.818 39 H 0.157 0.843 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -2.311 23.070 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.065 0.935 4 C -0.540 4.540 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.240 5.240 13 C -0.120 4.120 14 C -0.094 4.094 15 C 0.306 3.694 16 O -0.357 6.357 17 N -0.322 5.322 18 C 0.152 3.848 19 C -0.158 4.158 20 C 0.009 3.991 21 Cl -0.004 7.004 22 C -0.162 4.162 23 C -0.039 4.039 24 C -0.180 4.180 25 N 0.557 4.443 26 O -0.367 6.367 27 O -0.386 6.386 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.273 0.727 38 H 0.199 0.801 39 H 0.174 0.826 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.697 -3.156 22.422 23.612 hybrid contribution -1.290 0.068 -0.689 1.464 sum 5.407 -3.088 21.733 22.607 Atomic orbital electron populations 1.22394 1.00926 1.00175 0.99369 1.19409 0.89532 0.95004 0.85565 0.93509 1.21074 1.34771 1.08613 0.89524 0.91725 1.24913 0.95336 0.94839 0.99018 1.69934 1.43254 1.16346 1.23745 0.86514 0.78755 0.79740 0.82622 1.20835 1.21284 1.19759 1.62195 1.59519 1.02116 1.00178 1.22391 0.96550 0.90631 1.02456 1.21976 0.97867 0.99928 0.89678 1.21679 0.81905 0.82698 0.83085 1.90639 1.35217 1.25704 1.84121 1.44670 1.40211 1.40736 1.06570 1.17423 0.90179 0.92029 0.85177 1.21504 0.91428 1.00828 1.02004 1.21170 0.88559 0.95174 0.94188 1.98435 1.24113 1.81199 1.96696 1.20991 0.95861 1.03129 0.96205 1.20777 0.92356 0.92028 0.98788 1.20918 0.87187 1.14655 0.95240 1.43382 1.01982 0.98307 1.00586 1.94539 1.76348 1.57817 1.08031 1.94376 1.54256 1.54796 1.35139 0.96983 0.90598 0.94553 0.92955 0.90551 0.92430 0.96681 0.87567 0.91537 0.72693 0.80096 0.82565 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 8.22 37.16 0.31 -3.50 16 2 C 0.21 5.03 2.22 -68.86 -0.15 4.87 16 3 H 0.05 1.22 8.02 -51.93 -0.42 0.80 16 4 C -0.50 -13.37 7.98 -34.44 -0.27 -13.65 16 5 H 0.06 1.75 6.56 -52.49 -0.34 1.41 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.89 -24.88 11.97 55.43 0.66 -24.21 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.52 -10.67 4.48 -237.73 -1.06 -11.73 16 13 C 0.03 0.55 8.53 60.07 0.51 1.07 16 14 C 0.04 0.60 4.90 -4.98 -0.02 0.58 16 15 C 0.52 7.77 7.32 -10.99 -0.08 7.69 16 16 O -0.49 -8.44 11.52 5.55 0.06 -8.38 16 17 N -0.67 -8.24 4.85 -9.87 -0.05 -8.29 16 18 C 0.25 2.95 6.41 -83.70 -0.54 2.41 16 19 C -0.14 -1.54 8.49 -39.36 -0.33 -1.87 16 20 C 0.04 0.34 6.32 -39.52 -0.25 0.09 16 21 Cl -0.03 -0.30 28.95 -51.86 -1.50 -1.80 16 22 C -0.14 -0.96 9.83 -39.52 -0.39 -1.34 16 23 C -0.02 -0.15 9.55 -39.62 -0.38 -0.53 16 24 C -0.09 -0.96 6.86 -79.75 -0.55 -1.50 16 25 N 0.04 0.50 4.45 34.06 0.15 0.65 16 26 O -0.15 -1.77 18.46 -29.46 -0.54 -2.31 16 27 O -0.18 -2.30 15.87 -29.46 -0.47 -2.77 16 28 H 0.01 0.22 6.52 -51.93 -0.34 -0.12 16 29 H 0.08 1.89 6.82 -51.93 -0.35 1.54 16 30 H 0.04 0.81 6.67 -51.93 -0.35 0.46 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.08 1.63 6.44 -51.93 -0.33 1.29 16 33 H 0.06 1.09 5.82 -51.93 -0.30 0.79 16 34 H 0.01 0.29 6.40 -51.93 -0.33 -0.05 16 35 H 0.11 1.59 8.00 -51.93 -0.42 1.17 16 36 H 0.07 1.02 6.82 -51.93 -0.35 0.66 16 37 H 0.43 4.73 5.98 -40.82 -0.24 4.49 16 38 H 0.18 2.39 5.83 -52.49 -0.31 2.09 16 39 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.16 0.85 7.62 -52.48 -0.40 0.45 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -29.62 347.19 -8.82 -38.44 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.04 Total: 3.25 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.24 Total: -4.16 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.30 Total: -43.58 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.95 Total: -13.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.62 -8.82 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839504069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.050 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds