Wall clock time and date at job start Sat Apr 11 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.81400 * 102.99843 * 2 1 4 4 H 1.08999 * 110.67307 * 56.77519 * 3 2 1 5 5 C 1.54890 * 110.75374 * 293.54293 * 3 2 1 6 6 C 1.54259 * 104.19635 * 203.56247 * 5 3 2 7 7 C 1.53879 * 106.60236 * 23.60710 * 6 5 3 8 8 H 1.08996 * 110.02793 * 119.33508 * 7 6 5 9 9 N 1.46491 * 110.03378 * 240.72170 * 7 6 5 10 10 S 1.65608 * 119.99654 * 262.91642 * 9 7 6 11 11 O 1.42102 * 106.39970 * 310.93999 * 10 9 7 12 12 O 1.42097 * 106.40127 * 178.02131 * 10 9 7 13 13 C 1.76192 * 107.21912 * 64.47969 * 10 9 7 14 14 C 1.37635 * 120.13069 * 244.63422 * 13 10 9 15 15 C 1.38618 * 120.24997 * 180.25685 * 14 13 10 16 16 C 1.38654 * 120.49893 * 359.43899 * 15 14 13 17 17 C 1.37593 * 120.25169 * 0.28381 * 16 15 14 18 18 C 1.40707 * 120.12809 * 64.33706 * 13 10 9 19 19 C 1.41398 * 120.24094 * 0.04137 * 18 13 10 20 20 H 1.08000 * 120.00148 * 330.42181 * 19 18 13 21 21 C 1.39941 * 119.99591 * 150.42077 * 19 18 13 22 22 N 1.30828 * 119.99802 * 162.43019 * 21 19 18 23 23 Si 1.86803 * 120.00374 * 342.42764 * 21 19 18 24 24 H 1.48497 * 109.46937 * 95.12711 * 23 21 19 25 25 H 1.48502 * 109.47054 * 215.12795 * 23 21 19 26 26 H 1.48498 * 109.46987 * 335.12819 * 23 21 19 27 27 C 1.54263 * 106.63610 * 0.02703 * 7 6 5 28 28 H 1.08998 * 109.46604 * 60.00876 * 1 2 3 29 29 H 1.09002 * 109.46704 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47121 * 300.00533 * 1 2 3 31 31 H 1.08997 * 110.48813 * 84.88097 * 5 3 2 32 32 H 1.09005 * 110.48536 * 322.23877 * 5 3 2 33 33 H 1.09000 * 110.03432 * 264.32130 * 6 5 3 34 34 H 1.09003 * 110.03645 * 142.89706 * 6 5 3 35 35 H 0.96995 * 120.00576 * 82.91590 * 9 7 6 36 36 H 1.07999 * 119.87703 * 359.97438 * 14 13 10 37 37 H 1.07998 * 119.74706 * 179.71874 * 15 14 13 38 38 H 1.08000 * 119.87351 * 180.25299 * 16 15 14 39 39 H 1.07999 * 120.13116 * 179.97438 * 17 16 15 40 40 H 0.96999 * 120.00197 * 180.02562 * 22 21 19 41 41 H 1.09003 * 110.48797 * 95.03919 * 27 7 6 42 42 H 1.08996 * 110.48991 * 217.68725 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7642 2.2681 0.8531 5 6 1.7818 2.4324 -1.3278 6 6 2.6857 3.6769 -1.4456 7 6 3.9411 3.3899 -0.6033 8 1 4.8284 3.4137 -1.2358 9 7 4.0630 4.3801 0.4693 10 16 5.0476 5.6971 0.2723 11 8 6.2948 5.1996 -0.1927 12 8 4.9134 6.4783 1.4517 13 6 4.3748 6.6595 -1.0412 14 6 5.0832 6.8249 -2.2096 15 6 4.5586 7.5860 -3.2426 16 6 3.3117 8.1791 -3.1166 17 6 2.5833 8.0227 -1.9598 18 6 3.1084 7.2569 -0.9022 19 6 2.3692 7.0895 0.2914 20 1 2.4885 6.1912 0.8790 21 6 1.4830 8.0878 0.7114 22 7 0.5597 7.8127 1.5965 23 14 1.6182 9.8131 0.0082 24 1 0.6786 9.9577 -1.1326 25 1 1.2764 10.8044 1.0597 26 1 3.0071 10.0487 -0.4615 27 6 3.7575 1.9807 -0.0032 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7333 2.7258 -1.2783 32 1 1.9508 1.7574 -2.1669 33 1 2.1672 4.5532 -1.0564 34 1 2.9638 3.8393 -2.4870 35 1 3.5671 4.2645 1.2948 36 1 6.0535 6.3637 -2.3203 37 1 5.1234 7.7141 -4.1541 38 1 2.9109 8.7666 -3.9294 39 1 1.6125 8.4859 -1.8636 40 1 -0.0549 8.5045 1.8874 41 1 4.2454 1.2331 -0.6286 42 1 4.1504 1.9446 1.0129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866884846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:12 Heat of formation + Delta-G solvation = -69.500280 kcal Electronic energy + Delta-G solvation = -26435.866524 eV Core-core repulsion = 22826.011398 eV Total energy + Delta-G solvation = -3609.855126 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.41416 -37.87098 -36.28075 -34.90929 -33.93119 -32.94835 -30.77355 -30.14919 -29.13656 -28.62135 -26.94188 -25.45266 -22.10825 -21.25165 -20.86126 -20.22267 -18.87935 -17.79279 -17.26280 -16.55206 -16.23979 -15.98446 -15.39379 -14.96267 -14.57453 -14.37879 -14.20452 -13.75846 -13.69018 -13.50467 -13.42524 -13.11452 -12.85788 -12.38268 -12.18361 -12.00807 -11.93313 -11.64991 -11.36137 -11.22458 -11.17919 -11.07052 -11.05289 -10.99515 -10.83880 -10.58189 -10.52490 -10.40978 -10.01525 -9.87337 -9.65710 -9.37705 -8.86544 -8.28619 -7.88010 -7.72946 -7.27776 -4.91103 1.43843 1.66765 2.04180 2.48775 2.52623 2.93287 3.05690 3.16310 3.75442 3.84433 4.23004 4.47533 4.60259 4.67730 5.01595 5.04533 5.05253 5.09788 5.38484 5.45820 5.53802 5.55120 5.58212 5.60233 5.72212 5.78040 5.81411 5.89779 5.95807 6.13778 6.16797 6.21443 6.37041 6.52593 6.60859 6.74570 6.88578 7.05385 7.21021 7.34104 7.50339 7.56890 7.74995 7.99354 8.22328 8.44760 9.71384 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.004611 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.037144 B = 6070.355095 C = 6824.494450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.268 6.268 3 C -0.058 4.058 4 H 0.096 0.904 5 C -0.113 4.113 6 C -0.145 4.145 7 C 0.158 3.842 8 H 0.095 0.905 9 N -1.113 6.113 10 S 2.700 3.300 11 O -0.997 6.997 12 O -0.962 6.962 13 C -0.767 4.767 14 C 0.018 3.982 15 C -0.260 4.260 16 C -0.043 4.043 17 C -0.236 4.236 18 C 0.162 3.838 19 C -0.430 4.430 20 H 0.103 0.897 21 C 0.091 3.909 22 N -0.778 5.778 23 Si 0.912 3.088 24 H -0.268 1.268 25 H -0.285 1.285 26 H -0.240 1.240 27 C -0.102 4.102 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.292 0.708 41 H 0.085 0.915 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -9.116 -4.209 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.039 6.039 3 C -0.187 4.187 4 H 0.114 0.886 5 C -0.153 4.153 6 C -0.185 4.185 7 C 0.049 3.951 8 H 0.113 0.887 9 N -0.870 5.870 10 S 2.796 3.204 11 O -0.987 6.987 12 O -0.952 6.952 13 C -0.861 4.861 14 C -0.002 4.002 15 C -0.280 4.280 16 C -0.061 4.061 17 C -0.255 4.255 18 C 0.157 3.843 19 C -0.456 4.456 20 H 0.121 0.879 21 C -0.133 4.133 22 N -0.400 5.400 23 Si 0.737 3.263 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.162 1.162 27 C -0.142 4.142 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.390 -9.843 -3.605 10.489 hybrid contribution -1.916 1.972 -0.454 2.786 sum -2.306 -7.871 -4.058 9.151 Atomic orbital electron populations 1.23341 0.94382 1.06009 1.05124 1.86670 1.07340 1.11976 1.97954 1.24274 1.00264 0.92309 1.01876 0.88575 1.22673 0.99914 0.97176 0.95522 1.22807 0.96000 0.98923 1.00798 1.21215 0.98779 0.87120 0.87980 0.88654 1.55791 1.66196 1.39680 1.25291 1.01149 0.72499 0.72470 0.74268 1.93460 1.41275 1.80696 1.83262 1.93563 1.86355 1.68404 1.46894 1.29924 1.08184 1.30269 1.17767 1.20396 0.96308 0.92348 0.91146 1.20483 0.98539 1.09096 0.99918 1.20819 0.93964 0.95243 0.96097 1.21168 1.00648 1.08398 0.95309 1.17012 0.88013 0.87339 0.91960 1.19794 1.16185 1.05225 1.04439 0.87913 1.26169 0.91588 1.02116 0.93377 1.69638 1.10587 1.36540 1.23200 0.86309 0.81891 0.79901 0.78173 1.19364 1.21147 1.16247 1.22507 0.92452 0.96538 1.02740 0.90425 0.88515 0.90524 0.91466 0.90592 0.88645 0.90829 0.75297 0.86928 0.88202 0.88381 0.87694 0.89712 0.89663 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.63 101.05 1.07 -0.03 16 2 S -0.27 -3.10 21.84 -107.50 -2.35 -5.45 16 3 C -0.06 -0.71 3.41 -24.67 -0.08 -0.79 16 4 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 5 C -0.11 -1.38 6.16 -25.08 -0.15 -1.53 16 6 C -0.14 -2.08 6.59 -25.61 -0.17 -2.25 16 7 C 0.16 2.29 3.56 -66.82 -0.24 2.05 16 8 H 0.10 1.38 7.56 -51.93 -0.39 0.99 16 9 N -1.11 -18.67 4.41 -3.94 -0.02 -18.69 16 10 S 2.70 56.19 4.94 -107.50 -0.53 55.66 16 11 O -1.00 -21.51 16.35 -57.17 -0.93 -22.45 16 12 O -0.96 -23.31 16.64 -57.17 -0.95 -24.26 16 13 C -0.77 -16.79 5.93 -38.87 -0.23 -17.02 16 14 C 0.02 0.37 9.53 -39.66 -0.38 -0.01 16 15 C -0.26 -5.06 10.05 -39.29 -0.39 -5.45 16 16 C -0.04 -0.85 10.02 -39.66 -0.40 -1.24 16 17 C -0.24 -5.20 7.15 -38.87 -0.28 -5.47 16 18 C 0.16 3.75 4.97 -106.82 -0.53 3.22 16 19 C -0.43 -10.44 8.06 -37.74 -0.30 -10.74 16 20 H 0.10 2.47 5.95 -52.49 -0.31 2.16 16 21 C 0.09 2.21 5.41 -17.34 -0.09 2.11 16 22 N -0.78 -18.83 13.93 55.55 0.77 -18.06 16 23 Si 0.91 19.64 24.49 -169.99 -4.16 15.47 16 24 H -0.27 -5.43 6.70 56.52 0.38 -5.05 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.24 -5.42 6.83 56.52 0.39 -5.03 16 27 C -0.10 -1.26 5.94 -25.01 -0.15 -1.40 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 33 H 0.09 1.63 7.68 -51.93 -0.40 1.23 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.41 6.46 8.59 -34.47 -0.30 6.16 16 36 H 0.11 2.12 7.33 -52.49 -0.38 1.74 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.11 2.27 4.64 -52.49 -0.24 2.02 16 40 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 41 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 42 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -28.60 359.80 -10.91 -39.52 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.84 Total: 11.42 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: -2.33 Total: -38.57 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.76 Total: -36.75 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.89 Total: -46.71 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.16 Total: 15.47 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -2.88 Total: 50.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.60 -10.91 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866884846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.982 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds