Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99952 * 2 1 4 4 H 1.08997 * 110.43676 * 303.91568 * 3 2 1 5 5 C 1.54263 * 110.48428 * 66.45795 * 3 2 1 6 6 C 1.53876 * 106.59987 * 142.42237 * 5 3 2 7 7 C 1.54264 * 106.59910 * 359.97438 * 6 5 3 8 8 H 1.08998 * 110.48925 * 95.20405 * 7 6 5 9 9 N 1.46501 * 110.48781 * 217.71843 * 7 6 5 10 10 S 1.65608 * 119.99475 * 263.49222 * 9 7 6 11 11 O 1.42095 * 106.40436 * 311.60528 * 10 9 7 12 12 O 1.42099 * 106.39890 * 178.68886 * 10 9 7 13 13 C 1.76197 * 107.21902 * 65.14734 * 10 9 7 14 14 C 1.37630 * 120.12754 * 244.65147 * 13 10 9 15 15 C 1.38624 * 120.25000 * 179.72604 * 14 13 10 16 16 C 1.38660 * 120.49523 * 0.54762 * 15 14 13 17 17 C 1.37591 * 120.25035 * 359.72913 * 16 15 14 18 18 C 1.40708 * 120.12726 * 64.92165 * 13 10 9 19 19 C 1.41394 * 120.24026 * 359.97438 * 18 13 10 20 20 H 1.07995 * 120.00560 * 331.48850 * 19 18 13 21 21 C 1.39943 * 119.99594 * 151.49428 * 19 18 13 22 22 N 1.30822 * 120.00158 * 348.38945 * 21 19 18 23 23 Si 1.86807 * 120.00016 * 168.39067 * 21 19 18 24 24 H 1.48500 * 109.47112 * 89.99731 * 23 21 19 25 25 H 1.48497 * 109.46944 * 209.99831 * 23 21 19 26 26 H 1.48495 * 109.47006 * 330.00000 * 23 21 19 27 27 C 1.54892 * 110.59778 * 181.29765 * 3 2 1 28 28 H 1.09004 * 109.46502 * 299.99567 * 1 2 3 29 29 H 1.08997 * 109.47019 * 59.99590 * 1 2 3 30 30 H 1.09001 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08995 * 110.03513 * 23.13521 * 5 3 2 32 32 H 1.09000 * 110.03263 * 261.70391 * 5 3 2 33 33 H 1.09009 * 110.03079 * 240.71368 * 6 5 3 34 34 H 1.08994 * 110.07781 * 119.30472 * 6 5 3 35 35 H 0.96996 * 120.00591 * 83.49131 * 9 7 6 36 36 H 1.08000 * 119.88003 * 359.97001 * 14 13 10 37 37 H 1.07992 * 119.75009 * 180.29820 * 15 14 13 38 38 H 1.08000 * 119.87009 * 179.75181 * 16 15 14 39 39 H 1.08002 * 120.12657 * 180.02562 * 17 16 15 40 40 H 0.97001 * 120.00217 * 180.02562 * 22 21 19 41 41 H 1.08998 * 110.75855 * 85.01014 * 27 3 2 42 42 H 1.09003 * 110.75670 * 321.63270 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7524 2.2666 -0.8476 5 6 1.7811 2.4234 1.3248 6 6 2.8642 3.4548 1.6866 7 6 3.9258 3.3893 0.5693 8 1 3.7329 4.1516 -0.1855 9 7 5.2699 3.5522 1.1290 10 16 5.9953 5.0409 1.1207 11 8 5.8460 5.5527 -0.1964 12 8 7.2577 4.8755 1.7517 13 6 5.0468 6.0892 2.1724 14 6 4.3861 7.1772 1.6493 15 6 3.6345 8.0004 2.4734 16 6 3.5485 7.7451 3.8336 17 6 4.2054 6.6662 4.3792 18 6 4.9667 5.8204 3.5512 19 6 5.6455 4.7084 4.1006 20 1 5.8292 3.8340 3.4939 21 6 6.0794 4.7408 5.4307 22 7 6.0647 5.8669 6.0963 23 14 6.6795 3.1759 6.2558 24 1 8.1422 3.0335 6.0425 25 1 6.3959 3.2440 7.7118 26 1 5.9775 2.0064 5.6689 27 6 3.7570 1.9724 -0.0328 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7071 1.6693 2.1083 32 1 0.8204 2.9213 1.1933 33 1 3.3158 3.2012 2.6457 34 1 2.4298 4.4535 1.7312 35 1 5.7349 2.7882 1.5044 36 1 4.4501 7.3884 0.5920 37 1 3.1154 8.8492 2.0536 38 1 2.9633 8.3953 4.4670 39 1 4.1367 6.4689 5.4388 40 1 6.3658 5.8895 7.0181 41 1 4.1292 1.9408 -1.0568 42 1 4.2594 1.2282 0.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866884855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -89.268083 kcal Electronic energy + Delta-G solvation = -26254.041504 eV Core-core repulsion = 22643.329182 eV Total energy + Delta-G solvation = -3610.712322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.52999 -39.25626 -38.00028 -36.66156 -35.66412 -34.45985 -32.00433 -31.32815 -29.92570 -29.63601 -27.92389 -27.30348 -23.42206 -22.93131 -22.01521 -21.39564 -20.30807 -19.48976 -18.57548 -17.98026 -17.61690 -17.13362 -16.73433 -16.58423 -16.02262 -15.89311 -15.11227 -14.92707 -14.82137 -14.46763 -14.43260 -14.34598 -14.19051 -13.76371 -13.50105 -13.23738 -13.15181 -12.98722 -12.93925 -12.84133 -12.83864 -12.78143 -12.48969 -12.24717 -12.13284 -12.08195 -11.87533 -11.63339 -11.46611 -11.17242 -11.12238 -10.71388 -10.22050 -9.79811 -9.39677 -8.77672 -8.61833 -6.58507 -0.16107 0.56460 0.79205 1.00274 1.37330 1.48395 1.53031 1.69624 2.16022 2.33975 2.65771 3.00725 3.45181 3.53236 3.62825 3.83954 3.93600 4.32968 4.36537 4.38248 4.39185 4.43326 4.44196 4.48042 4.52730 4.56626 4.71612 4.76162 4.89325 4.94588 5.00638 5.11187 5.17484 5.24473 5.31874 5.35819 5.51640 5.54676 5.73843 5.85345 6.03767 6.11125 6.23500 6.50604 6.70550 6.86753 8.18108 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010590 B = 0.004553 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.353835 B = 6148.373459 C = 6885.703096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.297 6.297 3 C -0.048 4.048 4 H 0.107 0.893 5 C -0.108 4.108 6 C -0.139 4.139 7 C 0.152 3.848 8 H 0.096 0.904 9 N -1.102 6.102 10 S 2.716 3.284 11 O -1.010 7.010 12 O -1.001 7.001 13 C -0.785 4.785 14 C -0.015 4.015 15 C -0.249 4.249 16 C -0.076 4.076 17 C -0.184 4.184 18 C 0.171 3.829 19 C -0.472 4.472 20 H 0.093 0.907 21 C 0.041 3.959 22 N -0.809 5.809 23 Si 0.970 3.030 24 H -0.268 1.268 25 H -0.261 1.261 26 H -0.243 1.243 27 C -0.097 4.097 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.420 0.580 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.294 0.706 41 H 0.091 0.909 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 -9.358 -6.545 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.069 6.069 3 C -0.177 4.177 4 H 0.125 0.875 5 C -0.147 4.147 6 C -0.180 4.180 7 C 0.043 3.957 8 H 0.114 0.886 9 N -0.861 5.861 10 S 2.813 3.187 11 O -1.000 7.000 12 O -0.992 6.992 13 C -0.879 4.879 14 C -0.035 4.035 15 C -0.269 4.269 16 C -0.094 4.094 17 C -0.204 4.204 18 C 0.166 3.834 19 C -0.500 4.500 20 H 0.111 0.889 21 C -0.177 4.177 22 N -0.433 5.433 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.185 1.185 26 H -0.166 1.166 27 C -0.137 4.137 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.256 0.744 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.383 -9.797 -6.914 15.226 hybrid contribution -0.644 0.822 1.352 1.709 sum -10.028 -8.975 -5.562 14.562 Atomic orbital electron populations 1.23421 0.91579 1.07249 1.05813 1.86973 1.10417 1.11542 1.97979 1.23924 0.99235 0.92993 1.01578 0.87453 1.22439 0.98665 0.97938 0.95706 1.22626 0.96293 0.99659 0.99386 1.21667 0.80355 0.98882 0.94772 0.88617 1.55354 1.27811 1.26371 1.76562 1.00437 0.72922 0.72990 0.72374 1.93421 1.87494 1.80340 1.38726 1.93493 1.41850 1.86072 1.77740 1.30072 1.30238 1.18330 1.09273 1.20541 0.92226 0.92059 0.98646 1.20855 1.08353 1.03790 0.93944 1.21218 0.96932 0.96001 0.95294 1.21545 1.00579 0.98409 0.99874 1.17206 0.86251 0.90776 0.89136 1.20108 1.30547 1.01831 0.97542 0.88922 1.26744 0.93164 1.00535 0.97270 1.69818 1.33484 1.28082 1.11887 0.85361 0.79404 0.78200 0.78051 1.19349 1.18495 1.16625 1.22541 0.93346 0.95143 1.02687 0.89850 0.89470 0.87221 0.90521 0.90088 0.91340 0.91982 0.74369 0.86160 0.85718 0.86278 0.86976 0.89503 0.89007 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.62 113.37 1.20 -0.26 16 2 S -0.30 -5.87 21.66 -56.49 -1.22 -7.09 16 3 C -0.05 -0.94 3.38 31.67 0.11 -0.84 16 4 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 5 C -0.11 -2.28 6.25 31.32 0.20 -2.08 16 6 C -0.14 -3.89 6.54 31.32 0.20 -3.68 16 7 C 0.15 4.24 3.52 46.06 0.16 4.40 16 8 H 0.10 2.71 7.57 -2.39 -0.02 2.69 16 9 N -1.10 -36.69 4.66 -164.95 -0.77 -37.46 16 10 S 2.72 116.51 4.95 -56.49 -0.28 116.23 16 11 O -1.01 -44.63 16.34 -128.00 -2.09 -46.72 16 12 O -1.00 -50.06 16.58 -128.00 -2.12 -52.19 16 13 C -0.78 -36.33 5.94 22.73 0.13 -36.20 16 14 C -0.01 -0.65 9.53 22.22 0.21 -0.44 16 15 C -0.25 -10.18 10.05 22.46 0.23 -9.95 16 16 C -0.08 -3.24 10.02 22.22 0.22 -3.02 16 17 C -0.18 -8.94 8.66 22.73 0.20 -8.74 16 18 C 0.17 8.49 5.55 -21.29 -0.12 8.37 16 19 C -0.47 -23.27 7.65 23.46 0.18 -23.09 16 20 H 0.09 4.25 5.73 -2.91 -0.02 4.24 16 21 C 0.04 1.94 5.24 85.26 0.45 2.39 16 22 N -0.81 -39.91 10.87 21.83 0.24 -39.67 16 23 Si 0.97 36.27 29.58 68.60 2.03 38.30 16 24 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 25 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 26 H -0.24 -8.51 7.11 99.48 0.71 -7.81 16 27 C -0.10 -2.16 5.97 31.88 0.19 -1.97 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.66 7.80 -2.39 -0.02 1.64 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 2.19 8.04 -2.38 -0.02 2.17 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.42 12.57 8.50 -96.75 -0.82 11.74 16 36 H 0.12 4.78 7.33 -2.91 -0.02 4.76 16 37 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.11 5.62 6.24 -2.91 -0.02 5.60 16 40 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 1.92 7.97 -2.39 -0.02 1.90 16 Total: -1.00 -63.39 365.44 -0.44 -63.83 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: 0.22 Total: 39.88 kcal Atomic # 6 Polarization: -78.67 SS G_CDS: 3.56 Total: -75.11 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -0.53 Total: -77.13 kcal Atomic # 8 Polarization: -94.69 SS G_CDS: -4.21 Total: -98.90 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 16 Polarization: 110.64 SS G_CDS: -1.50 Total: 109.14 kcal Total: -63.39 -0.44 -63.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866884855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.443 kcal (2) G-P(sol) polarization free energy of solvation -63.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds