Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81395 * 103.00213 * 2 1 4 4 H 1.08995 * 112.85125 * 316.19576 * 3 2 1 5 5 C 1.53782 * 113.61556 * 87.50170 * 3 2 1 6 6 C 1.53777 * 87.08267 * 139.98052 * 5 3 2 7 7 H 1.09000 * 113.61851 * 220.01947 * 6 5 3 8 8 N 1.46505 * 113.69123 * 89.12730 * 6 5 3 9 9 S 1.65597 * 120.00073 * 117.46600 * 8 6 5 10 10 O 1.42103 * 104.27637 * 181.07420 * 9 8 6 11 11 O 1.42100 * 104.27647 * 308.92672 * 9 8 6 12 12 C 1.81396 * 104.44939 * 65.00178 * 9 8 6 13 13 C 1.50697 * 109.46949 * 180.02562 * 12 9 8 14 14 C 1.38639 * 119.75245 * 269.72188 * 13 12 9 15 15 C 1.37613 * 120.25175 * 179.76069 * 14 13 12 16 16 C 1.40719 * 119.74407 * 0.49704 * 15 14 13 17 17 C 1.41398 * 120.24497 * 179.78787 * 16 15 14 18 18 H 1.08003 * 119.99658 * 204.37382 * 17 16 15 19 19 C 1.39947 * 120.00075 * 24.36957 * 17 16 15 20 20 N 1.30823 * 119.99870 * 17.86676 * 19 17 16 21 21 Si 1.86798 * 120.00087 * 197.87217 * 19 17 16 22 22 H 1.48497 * 109.47138 * 59.99585 * 21 19 17 23 23 H 1.48497 * 109.47070 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47016 * 300.00003 * 21 19 17 25 25 C 1.40716 * 119.51183 * 359.75677 * 16 15 14 26 26 C 1.37618 * 119.74112 * 0.02562 * 25 16 15 27 27 C 1.53778 * 87.08306 * 334.56905 * 6 5 3 28 28 H 1.09000 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46767 * 300.00241 * 1 2 3 30 30 H 1.09001 * 109.46916 * 59.99930 * 1 2 3 31 31 H 1.08995 * 113.61288 * 254.52950 * 5 3 2 32 32 H 1.09001 * 113.61760 * 25.43475 * 5 3 2 33 33 H 0.97000 * 119.99845 * 297.46430 * 8 6 5 34 34 H 1.08995 * 109.46944 * 299.99789 * 12 9 8 35 35 H 1.08999 * 109.47060 * 60.00341 * 12 9 8 36 36 H 1.08005 * 119.87152 * 0.02562 * 14 13 12 37 37 H 1.07996 * 120.12949 * 180.27713 * 15 14 13 38 38 H 0.97002 * 119.99840 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.12738 * 179.97438 * 25 16 15 40 40 H 1.08003 * 119.87185 * 179.97438 * 26 25 16 41 41 H 1.09001 * 113.61518 * 270.88541 * 27 6 5 42 42 H 1.08996 * 113.62019 * 139.97636 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.6111 2.3430 -0.6952 5 6 2.3009 2.3815 1.4077 6 6 3.5207 3.1737 0.9084 7 1 4.3238 3.2469 1.6417 8 7 3.1783 4.4658 0.3088 9 16 3.7305 5.8688 0.9937 10 8 3.1894 6.8956 0.1739 11 8 3.3674 5.7569 2.3630 12 6 5.5327 5.7861 0.8042 13 6 6.1573 7.0226 1.3973 14 6 6.3613 8.1397 0.6019 15 6 6.9263 9.2760 1.1341 16 6 7.3072 9.2977 2.4886 17 6 7.8929 10.4580 3.0453 18 1 8.5279 10.3781 3.9152 19 6 7.6497 11.7099 2.4690 20 7 6.6351 11.8712 1.6590 21 14 8.7738 13.1507 2.8561 22 1 10.1597 12.8245 2.4341 23 1 8.3039 14.3553 2.1260 24 1 8.7511 13.4176 4.3168 25 6 7.1003 8.1563 3.2852 26 6 6.5294 7.0326 2.7328 27 6 3.7285 2.0519 -0.1228 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.4458 3.0090 1.6588 32 1 2.5395 1.6578 2.1871 33 1 2.6281 4.4996 -0.4893 34 1 5.9122 4.9044 1.3204 35 1 5.7842 5.7237 -0.2546 36 1 6.0716 8.1194 -0.4384 37 1 7.0802 10.1465 0.5138 38 1 6.4663 12.7390 1.2598 39 1 7.3893 8.1619 4.3258 40 1 6.3700 6.1552 3.3421 41 1 4.3573 1.2380 0.2381 42 1 4.0257 2.4132 -1.1072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867673045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -61.784929 kcal Electronic energy + Delta-G solvation = -24512.863132 eV Core-core repulsion = 20903.342569 eV Total energy + Delta-G solvation = -3609.520563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12691 -39.57581 -38.06750 -36.92294 -35.94866 -33.68339 -33.20516 -31.27330 -29.79052 -29.53104 -26.66953 -26.04158 -25.95992 -23.01399 -22.17004 -20.99143 -20.32615 -19.29470 -18.85351 -17.45998 -17.40508 -17.16916 -17.10676 -16.31184 -16.03046 -15.71002 -15.59996 -15.45451 -15.27315 -14.57285 -14.36005 -14.07376 -13.98013 -13.89619 -13.69897 -13.53453 -13.48542 -13.18025 -13.10744 -13.03374 -13.02786 -12.76648 -12.71889 -12.36127 -12.20326 -11.98856 -11.80087 -11.54082 -11.45435 -11.34479 -11.02706 -10.79523 -10.43286 -9.46630 -9.27406 -8.71215 -8.63886 -6.40617 -0.74468 0.82039 0.89058 1.07382 1.37658 1.49271 1.53018 1.65401 1.86400 2.17911 2.63163 2.89231 3.26623 3.44269 3.45976 3.65608 3.74870 3.80291 3.98071 4.04573 4.21366 4.32781 4.35358 4.44746 4.52665 4.56606 4.74040 4.80510 4.85737 4.89222 4.97831 5.00285 5.03296 5.08758 5.26340 5.34985 5.39370 5.61611 5.84341 6.02428 6.04590 6.09284 6.28828 6.60952 6.85024 6.93488 8.25267 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.039865 B = 0.002124 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.200674 B =13181.340648 C =13362.172630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.292 6.292 3 C -0.077 4.077 4 H 0.109 0.891 5 C -0.142 4.142 6 C 0.120 3.880 7 H 0.120 0.880 8 N -1.093 6.093 9 S 2.598 3.402 10 O -1.003 7.003 11 O -0.994 6.994 12 C -0.520 4.520 13 C -0.233 4.233 14 C -0.093 4.093 15 C -0.196 4.196 16 C 0.083 3.917 17 C -0.489 4.489 18 H 0.083 0.917 19 C 0.031 3.969 20 N -0.818 5.818 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.268 1.268 24 H -0.258 1.258 25 C -0.246 4.246 26 C -0.076 4.076 27 C -0.108 4.108 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.422 0.578 34 H 0.161 0.839 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.292 0.708 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 -19.908 -5.690 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.064 6.064 3 C -0.206 4.206 4 H 0.127 0.873 5 C -0.184 4.184 6 C 0.010 3.990 7 H 0.138 0.862 8 N -0.852 5.852 9 S 2.698 3.302 10 O -0.993 6.993 11 O -0.984 6.984 12 C -0.651 4.651 13 C -0.237 4.237 14 C -0.112 4.112 15 C -0.216 4.216 16 C 0.080 3.920 17 C -0.518 4.518 18 H 0.101 0.899 19 C -0.185 4.185 20 N -0.443 5.443 21 Si 0.808 3.192 22 H -0.181 1.181 23 H -0.192 1.192 24 H -0.182 1.182 25 C -0.265 4.265 26 C -0.095 4.095 27 C -0.148 4.148 28 H 0.127 0.873 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.258 0.742 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.811 -20.027 -5.316 21.811 hybrid contribution -0.469 1.678 -0.413 1.791 sum -7.281 -18.349 -5.728 20.555 Atomic orbital electron populations 1.23398 0.92351 1.07158 1.05475 1.86894 1.09766 1.12033 1.97737 1.24792 1.01803 0.92911 1.01088 0.87266 1.23801 0.99211 0.99255 0.96097 1.21778 0.98509 0.82193 0.96484 0.86235 1.55282 1.67046 1.19796 1.43052 1.05500 0.78869 0.72534 0.73326 1.93510 1.78501 1.57274 1.70025 1.93507 1.82533 1.85894 1.36447 1.28986 1.20659 1.04031 1.11457 1.18541 1.15274 0.94806 0.95071 1.20950 0.98190 0.93257 0.98808 1.21342 1.06661 0.97825 0.95730 1.18106 0.88868 0.93059 0.91923 1.19951 1.27020 0.91786 1.13039 0.89876 1.26910 0.95353 1.03314 0.92890 1.69880 1.23622 1.27037 1.23809 0.85161 0.78735 0.75579 0.79712 1.18148 1.19209 1.18203 1.21235 1.10459 0.95865 0.98978 1.20893 0.96657 0.97652 0.94305 1.23232 0.93005 0.97544 1.01058 0.87300 0.90145 0.89888 0.91238 0.87087 0.74229 0.82159 0.82663 0.86799 0.87620 0.89751 0.87636 0.85366 0.86858 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.76 113.37 1.22 -0.01 16 2 S -0.29 -4.40 22.17 -56.49 -1.25 -5.65 16 3 C -0.08 -1.03 4.10 31.12 0.13 -0.90 16 4 H 0.11 1.35 8.12 -2.39 -0.02 1.33 16 5 C -0.14 -2.18 7.47 31.12 0.23 -1.95 16 6 C 0.12 1.83 4.31 45.51 0.20 2.03 16 7 H 0.12 1.58 7.74 -2.39 -0.02 1.56 16 8 N -1.09 -21.05 5.62 -167.19 -0.94 -21.99 16 9 S 2.60 79.60 5.38 -56.49 -0.30 79.30 16 10 O -1.00 -39.35 18.08 -127.65 -2.31 -41.66 16 11 O -0.99 -37.40 17.82 -127.65 -2.27 -39.67 16 12 C -0.52 -14.27 6.19 71.24 0.44 -13.83 16 13 C -0.23 -9.48 5.16 -19.67 -0.10 -9.58 16 14 C -0.09 -4.28 9.67 22.22 0.21 -4.06 16 15 C -0.20 -10.42 8.70 22.73 0.20 -10.22 16 16 C 0.08 4.53 5.58 -21.29 -0.12 4.42 16 17 C -0.49 -26.19 9.05 23.46 0.21 -25.98 16 18 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 19 C 0.03 1.58 5.14 85.26 0.44 2.02 16 20 N -0.82 -43.16 10.95 21.83 0.24 -42.92 16 21 Si 0.99 37.64 29.60 68.60 2.03 39.67 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 25 C -0.25 -12.05 9.80 22.73 0.22 -11.83 16 26 C -0.08 -3.25 9.67 22.22 0.21 -3.04 16 27 C -0.11 -1.23 7.46 31.12 0.23 -0.99 16 28 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.42 6.65 8.76 -96.75 -0.85 5.80 16 34 H 0.16 3.14 7.77 -2.39 -0.02 3.13 16 35 H 0.16 3.34 8.08 -2.39 -0.02 3.32 16 36 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.11 5.84 6.15 -2.91 -0.02 5.82 16 38 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 39 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 41 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -73.01 377.89 -0.90 -73.91 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.18 Total: 32.95 kcal Atomic # 6 Polarization: -77.66 SS G_CDS: 3.73 Total: -73.93 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -0.70 Total: -64.91 kcal Atomic # 8 Polarization: -76.75 SS G_CDS: -4.58 Total: -81.33 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: 75.20 SS G_CDS: -1.56 Total: 73.65 kcal Total: -73.01 -0.90 -73.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867673045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.124 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds