Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39025 * 119.99844 * 2 1 4 4 C 1.39037 * 119.63586 * 0.02562 * 3 2 1 5 5 C 1.39626 * 118.95539 * 179.72309 * 4 3 2 6 6 C 1.48015 * 120.88306 * 180.29753 * 5 4 3 7 7 O 1.21562 * 120.00046 * 329.29117 * 6 5 4 8 8 N 1.34775 * 119.99829 * 149.28770 * 6 5 4 9 9 C 1.36798 * 120.00280 * 5.91376 * 8 6 5 10 10 H 1.08003 * 120.00013 * 320.46492 * 9 8 6 11 11 C 1.39099 * 119.99839 * 140.45662 * 9 8 6 12 12 N 1.31326 * 119.99913 * 160.84826 * 11 9 8 13 13 Si 1.86797 * 120.00353 * 340.84533 * 11 9 8 14 14 H 1.48499 * 109.46817 * 95.34808 * 13 11 9 15 15 H 1.48494 * 109.47152 * 215.34663 * 13 11 9 16 16 H 1.48501 * 109.47104 * 335.35173 * 13 11 9 17 17 C 1.46504 * 120.00069 * 185.91631 * 8 6 5 18 18 C 1.53000 * 109.47170 * 89.99685 * 17 8 6 19 19 C 1.50699 * 109.46842 * 180.02562 * 18 17 8 20 20 O 1.20829 * 120.00067 * 359.97438 * 19 18 17 21 21 O 1.34231 * 119.99980 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00196 * 179.97438 * 21 19 18 23 23 C 1.40049 * 118.23582 * 0.27975 * 5 4 3 24 24 C 1.38092 * 119.15327 * 359.97438 * 23 5 4 25 25 Cl 1.73593 * 119.51341 * 180.02562 * 24 23 5 26 26 N 1.32030 * 120.97018 * 359.97438 * 24 23 5 27 27 H 1.09002 * 109.47169 * 299.99767 * 1 2 3 28 28 H 1.09002 * 109.47323 * 59.99715 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 0.96996 * 119.99595 * 180.02562 * 2 1 3 31 31 H 1.08010 * 120.52101 * 359.97438 * 4 3 2 32 32 H 0.96998 * 120.00592 * 185.01349 * 12 11 9 33 33 H 1.08994 * 109.47166 * 210.00662 * 17 8 6 34 34 H 1.09008 * 109.46766 * 330.00065 * 17 8 6 35 35 H 1.08994 * 109.47331 * 300.00004 * 18 17 8 36 36 H 1.08995 * 109.46657 * 60.00613 * 18 17 8 37 37 H 1.08995 * 109.47104 * 299.99469 * 22 21 19 38 38 H 1.09004 * 109.46764 * 59.99257 * 22 21 19 39 39 H 1.08996 * 109.46906 * 179.97438 * 22 21 19 40 40 H 1.07998 * 120.42478 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2040 0.0000 4 6 1.4573 2.4036 0.0005 5 6 2.1696 3.6045 0.0064 6 6 1.4648 4.9060 0.0138 7 8 0.3790 5.0123 -0.5225 8 7 2.0267 5.9732 0.6153 9 6 3.2982 5.8874 1.1125 10 1 3.6229 4.9868 1.6124 11 6 4.1730 6.9600 0.9739 12 7 5.2309 7.0485 1.7470 13 14 3.8431 8.2744 -0.3117 14 1 3.1223 9.4108 0.3161 15 1 5.1323 8.7542 -0.8711 16 1 3.0124 7.7030 -1.4019 17 6 1.2758 7.2253 0.7366 18 6 0.4883 7.2226 2.0484 19 6 -0.2846 8.5103 2.1729 20 8 -0.2126 9.3448 1.3020 21 8 -1.0523 8.7307 3.2517 22 6 -1.7678 9.9931 3.3049 23 6 3.5689 3.5448 0.0055 24 6 4.1896 2.3112 -0.0005 25 17 5.9234 2.2264 -0.0010 26 7 3.4837 1.1955 -0.0050 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.9499 -0.8400 -0.0004 31 1 0.3772 2.4066 0.0005 32 1 5.8011 7.8319 1.7010 33 1 1.9687 8.0666 0.7304 34 1 0.5850 7.3173 -0.1016 35 1 -0.2047 6.3813 2.0545 36 1 1.1790 7.1306 2.8865 37 1 -1.0542 10.8165 3.2802 38 1 -2.4380 10.0671 2.4484 39 1 -2.3487 10.0428 4.2258 40 1 4.1550 4.4519 0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -59.613632 kcal Electronic energy + Delta-G solvation = -27564.632682 eV Core-core repulsion = 23406.869352 eV Total energy + Delta-G solvation = -4157.763330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38366 -40.10432 -38.70286 -36.42521 -36.39639 -35.36031 -35.25677 -32.70123 -32.17369 -30.85127 -29.49328 -27.73153 -26.19174 -25.42731 -24.84835 -22.94566 -22.04725 -20.63839 -19.62212 -18.20348 -17.50329 -17.09352 -16.72597 -16.46963 -16.34005 -15.60897 -15.24518 -15.06812 -14.77730 -14.41218 -14.33112 -14.10045 -13.86213 -13.77531 -13.35116 -13.11053 -12.76267 -12.62159 -12.41340 -12.20636 -12.07363 -11.82772 -11.56415 -11.43674 -11.20173 -10.94667 -10.81779 -10.71333 -10.33010 -10.26584 -10.00919 -9.72959 -9.56190 -9.41635 -9.14833 -8.79268 -8.07369 -7.42876 -6.63366 -4.31055 1.27833 1.68230 2.21763 2.43057 2.81750 3.01227 3.16441 3.23770 3.35623 3.55955 3.95593 4.04661 4.29193 4.71812 5.00340 5.06471 5.11826 5.18258 5.27693 5.30866 5.42065 5.43239 5.43496 5.56944 5.60507 5.62265 5.72023 5.92079 5.92856 6.13149 6.23251 6.40877 6.55288 6.67438 6.95385 7.07834 7.13999 7.64149 7.81002 7.93608 8.02051 8.27988 8.67153 9.03724 9.34812 10.40449 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.004178 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.031797 B = 6699.675180 C = 8611.871587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.735 5.735 3 C 0.400 3.600 4 C -0.191 4.191 5 C -0.007 4.007 6 C 0.519 3.481 7 O -0.582 6.582 8 N -0.445 5.445 9 C -0.367 4.367 10 H 0.121 0.879 11 C 0.075 3.925 12 N -0.841 5.841 13 Si 0.868 3.132 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.257 1.257 17 C 0.112 3.888 18 C -0.123 4.123 19 C 0.468 3.532 20 O -0.510 6.510 21 O -0.362 6.362 22 C 0.035 3.965 23 C -0.159 4.159 24 C 0.203 3.797 25 Cl -0.038 7.038 26 N -0.540 5.540 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.403 0.597 31 H 0.140 0.860 32 H 0.281 0.719 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.656 -5.298 1.563 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.370 5.370 3 C 0.165 3.835 4 C -0.217 4.217 5 C -0.018 4.018 6 C 0.309 3.691 7 O -0.467 6.467 8 N -0.164 5.164 9 C -0.494 4.494 10 H 0.138 0.862 11 C -0.136 4.136 12 N -0.474 5.474 13 Si 0.695 3.305 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.180 1.180 17 C -0.011 4.011 18 C -0.161 4.161 19 C 0.311 3.689 20 O -0.398 6.398 21 O -0.278 6.278 22 C -0.059 4.059 23 C -0.182 4.182 24 C 0.040 3.960 25 Cl -0.010 7.010 26 N -0.260 5.260 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.238 0.762 31 H 0.157 0.843 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.573 -5.598 1.071 9.478 hybrid contribution -0.084 1.339 -0.407 1.402 sum -7.657 -4.259 0.664 8.787 Atomic orbital electron populations 1.21564 0.79004 1.02395 1.01677 1.44064 1.05478 1.04826 1.82604 1.17753 0.86539 0.86394 0.92863 1.21446 1.01176 0.90338 1.08742 1.19958 0.92947 0.93549 0.95345 1.18058 0.85964 0.84580 0.80537 1.90665 1.22988 1.85229 1.47823 1.43492 1.13942 1.09262 1.49679 1.19309 0.85901 1.06310 1.37852 0.86226 1.25341 0.94651 0.97724 0.95852 1.69621 1.14699 1.28985 1.34090 0.87025 0.78210 0.81984 0.83316 1.19320 1.20918 1.18030 1.21468 0.95645 0.88316 0.95637 1.21771 0.99278 0.92321 1.02770 1.23948 0.76844 0.89321 0.78827 1.90655 1.61876 1.46713 1.40522 1.86533 1.57144 1.40030 1.44140 1.23213 0.96003 0.83722 1.02982 1.23008 0.94963 0.99058 1.01141 1.21114 0.86428 0.89017 0.99395 1.98380 1.07453 1.98614 1.96547 1.66001 1.06499 1.32109 1.21413 0.92626 0.92562 0.90612 0.76196 0.84256 0.90850 0.90341 0.89685 0.87509 0.86425 0.92028 0.92068 0.88375 0.79400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.92 9.92 59.85 0.59 1.51 16 2 N -0.73 -9.14 5.89 -67.23 -0.40 -9.54 16 3 C 0.40 6.61 7.65 -155.07 -1.19 5.43 16 4 C -0.19 -3.38 8.91 -38.77 -0.35 -3.73 16 5 C -0.01 -0.14 5.60 -104.69 -0.59 -0.72 16 6 C 0.52 11.49 7.45 -12.25 -0.09 11.39 16 7 O -0.58 -13.69 16.36 5.31 0.09 -13.61 16 8 N -0.45 -9.89 2.15 -115.83 -0.25 -10.14 16 9 C -0.37 -8.58 6.76 -15.02 -0.10 -8.68 16 10 H 0.12 2.93 6.03 -52.48 -0.32 2.61 16 11 C 0.08 1.81 5.35 -17.45 -0.09 1.72 16 12 N -0.84 -21.16 13.95 55.50 0.77 -20.38 16 13 Si 0.87 19.58 24.92 -169.99 -4.24 15.34 16 14 H -0.27 -6.02 6.72 56.52 0.38 -5.64 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 17 C 0.11 2.37 3.52 -4.04 -0.01 2.35 16 18 C -0.12 -2.17 6.14 -27.88 -0.17 -2.34 16 19 C 0.47 8.14 7.96 36.01 0.29 8.42 16 20 O -0.51 -10.13 15.73 -18.75 -0.29 -10.42 16 21 O -0.36 -5.38 10.57 -39.26 -0.41 -5.79 16 22 C 0.03 0.39 10.56 101.05 1.07 1.45 16 23 C -0.16 -3.20 7.57 -38.96 -0.29 -3.49 16 24 C 0.20 3.84 7.26 -17.52 -0.13 3.71 16 25 Cl -0.04 -0.66 29.10 -51.86 -1.51 -2.17 16 26 N -0.54 -9.74 10.34 -9.61 -0.10 -9.84 16 27 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 28 H 0.06 0.54 7.93 -51.93 -0.41 0.13 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.40 4.41 8.95 -40.82 -0.37 4.05 16 31 H 0.14 2.28 6.64 -52.48 -0.35 1.93 16 32 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.08 1.75 3.24 -51.93 -0.17 1.58 16 34 H 0.08 1.85 7.31 -51.92 -0.38 1.47 16 35 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 36 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.19 4.10 5.25 -52.49 -0.28 3.83 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -29.01 354.98 -6.42 -35.43 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.37 Total: 8.75 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: -1.06 Total: 17.02 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.03 Total: -49.90 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.62 Total: -29.82 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.24 Total: 15.34 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.51 Total: -2.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.01 -6.42 -35.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.185 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds