Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.39025 * 119.99844 * 2 1 4 4 C 1.39037 * 119.63586 * 0.02562 * 3 2 1 5 5 C 1.39626 * 118.95539 * 179.72309 * 4 3 2 6 6 C 1.48015 * 120.88306 * 180.29753 * 5 4 3 7 7 O 1.21562 * 120.00046 * 329.29117 * 6 5 4 8 8 N 1.34775 * 119.99829 * 149.28770 * 6 5 4 9 9 C 1.36798 * 120.00280 * 5.91376 * 8 6 5 10 10 H 1.08003 * 120.00013 * 320.46492 * 9 8 6 11 11 C 1.39099 * 119.99839 * 140.45662 * 9 8 6 12 12 N 1.31326 * 119.99913 * 160.84826 * 11 9 8 13 13 Si 1.86797 * 120.00353 * 340.84533 * 11 9 8 14 14 H 1.48499 * 109.46817 * 95.34808 * 13 11 9 15 15 H 1.48494 * 109.47152 * 215.34663 * 13 11 9 16 16 H 1.48501 * 109.47104 * 335.35173 * 13 11 9 17 17 C 1.46504 * 120.00069 * 185.91631 * 8 6 5 18 18 C 1.53000 * 109.47170 * 89.99685 * 17 8 6 19 19 C 1.50699 * 109.46842 * 180.02562 * 18 17 8 20 20 O 1.20829 * 120.00067 * 359.97438 * 19 18 17 21 21 O 1.34231 * 119.99980 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00196 * 179.97438 * 21 19 18 23 23 C 1.40049 * 118.23582 * 0.27975 * 5 4 3 24 24 C 1.38092 * 119.15327 * 359.97438 * 23 5 4 25 25 Cl 1.73593 * 119.51341 * 180.02562 * 24 23 5 26 26 N 1.32030 * 120.97018 * 359.97438 * 24 23 5 27 27 H 1.09002 * 109.47169 * 299.99767 * 1 2 3 28 28 H 1.09002 * 109.47323 * 59.99715 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 0.96996 * 119.99595 * 180.02562 * 2 1 3 31 31 H 1.08010 * 120.52101 * 359.97438 * 4 3 2 32 32 H 0.96998 * 120.00592 * 185.01349 * 12 11 9 33 33 H 1.08994 * 109.47166 * 210.00662 * 17 8 6 34 34 H 1.09008 * 109.46766 * 330.00065 * 17 8 6 35 35 H 1.08994 * 109.47331 * 300.00004 * 18 17 8 36 36 H 1.08995 * 109.46657 * 60.00613 * 18 17 8 37 37 H 1.08995 * 109.47104 * 299.99469 * 22 21 19 38 38 H 1.09004 * 109.46764 * 59.99257 * 22 21 19 39 39 H 1.08996 * 109.46906 * 179.97438 * 22 21 19 40 40 H 1.07998 * 120.42478 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2040 0.0000 4 6 1.4573 2.4036 0.0005 5 6 2.1696 3.6045 0.0064 6 6 1.4648 4.9060 0.0138 7 8 0.3790 5.0123 -0.5225 8 7 2.0267 5.9732 0.6153 9 6 3.2982 5.8874 1.1125 10 1 3.6229 4.9868 1.6124 11 6 4.1730 6.9600 0.9739 12 7 5.2309 7.0485 1.7470 13 14 3.8431 8.2744 -0.3117 14 1 3.1223 9.4108 0.3161 15 1 5.1323 8.7542 -0.8711 16 1 3.0124 7.7030 -1.4019 17 6 1.2758 7.2253 0.7366 18 6 0.4883 7.2226 2.0484 19 6 -0.2846 8.5103 2.1729 20 8 -0.2126 9.3448 1.3020 21 8 -1.0523 8.7307 3.2517 22 6 -1.7678 9.9931 3.3049 23 6 3.5689 3.5448 0.0055 24 6 4.1896 2.3112 -0.0005 25 17 5.9234 2.2264 -0.0010 26 7 3.4837 1.1955 -0.0050 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.9499 -0.8400 -0.0004 31 1 0.3772 2.4066 0.0005 32 1 5.8011 7.8319 1.7010 33 1 1.9687 8.0666 0.7304 34 1 0.5850 7.3173 -0.1016 35 1 -0.2047 6.3813 2.0545 36 1 1.1790 7.1306 2.8865 37 1 -1.0542 10.8165 3.2802 38 1 -2.4380 10.0671 2.4484 39 1 -2.3487 10.0428 4.2258 40 1 4.1550 4.4519 0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -77.751428 kcal Electronic energy + Delta-G solvation = -27565.419195 eV Core-core repulsion = 23406.869352 eV Total energy + Delta-G solvation = -4158.549843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85669 -41.48908 -40.29696 -37.79811 -37.72938 -37.09392 -36.46986 -34.37226 -33.81619 -32.38146 -30.80971 -28.82195 -27.29909 -27.13356 -26.32955 -24.45461 -23.39184 -21.99115 -21.28413 -19.82875 -18.88423 -18.44250 -18.35657 -17.82977 -17.65419 -17.11203 -16.84194 -16.54190 -16.18690 -15.79014 -15.65030 -15.49121 -15.43122 -15.14818 -14.52577 -14.46098 -14.42801 -14.11248 -14.03911 -13.57667 -13.23336 -13.00403 -12.95084 -12.85669 -12.73498 -12.61654 -12.22610 -12.06870 -11.88100 -11.78402 -11.67211 -11.29653 -11.11354 -11.04052 -10.56678 -10.46703 -9.86202 -8.70192 -8.49444 -6.18130 -0.22482 0.22947 0.79932 1.06011 1.18866 1.31701 1.39263 1.53226 1.88341 2.11580 2.24234 2.46682 2.73446 2.94548 3.61498 3.71738 3.85779 3.92779 4.04572 4.09296 4.23325 4.29474 4.30892 4.38893 4.43409 4.52393 4.59873 4.67526 4.70148 4.71222 4.83152 4.98029 5.22393 5.26383 5.29854 5.45246 5.94703 5.99330 6.15440 6.49644 6.61850 6.83524 7.01068 7.22323 7.55476 8.56125 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.004178 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.031797 B = 6699.675180 C = 8611.871587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.719 5.719 3 C 0.405 3.595 4 C -0.186 4.186 5 C -0.024 4.024 6 C 0.519 3.481 7 O -0.598 6.598 8 N -0.452 5.452 9 C -0.351 4.351 10 H 0.108 0.892 11 C 0.052 3.948 12 N -0.871 5.871 13 Si 0.903 3.097 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.270 1.270 17 C 0.111 3.889 18 C -0.115 4.115 19 C 0.474 3.526 20 O -0.540 6.540 21 O -0.359 6.359 22 C 0.026 3.974 23 C -0.174 4.174 24 C 0.202 3.798 25 Cl -0.029 7.029 26 N -0.544 5.544 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.414 0.586 31 H 0.154 0.846 32 H 0.284 0.716 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.137 0.863 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 -6.767 2.105 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C 0.168 3.832 4 C -0.212 4.212 5 C -0.035 4.035 6 C 0.310 3.690 7 O -0.484 6.484 8 N -0.171 5.171 9 C -0.478 4.478 10 H 0.126 0.874 11 C -0.156 4.156 12 N -0.506 5.506 13 Si 0.730 3.270 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.194 1.194 17 C -0.012 4.012 18 C -0.154 4.154 19 C 0.318 3.682 20 O -0.430 6.430 21 O -0.275 6.275 22 C -0.067 4.067 23 C -0.198 4.198 24 C 0.039 3.961 25 Cl 0.000 7.000 26 N -0.266 5.266 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.250 0.750 31 H 0.172 0.828 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.215 -7.097 1.632 11.745 hybrid contribution 0.270 1.652 -0.576 1.771 sum -8.945 -5.444 1.056 10.524 Atomic orbital electron populations 1.21866 0.76767 1.04994 1.01732 1.44285 1.06813 1.03750 1.80506 1.18009 0.86225 0.87598 0.91402 1.21566 1.01813 0.89851 1.07991 1.19897 0.93112 0.93495 0.97028 1.18369 0.85726 0.85163 0.79755 1.90640 1.23666 1.85684 1.48399 1.43547 1.13771 1.09764 1.50008 1.19142 0.86310 1.05587 1.36760 0.87432 1.25593 0.94685 0.98738 0.96534 1.69645 1.15679 1.29822 1.35467 0.86488 0.77733 0.80906 0.81842 1.19413 1.20585 1.19447 1.21418 0.95326 0.87332 0.97158 1.21605 0.99457 0.93362 1.00963 1.23739 0.76766 0.88650 0.78997 1.90645 1.63048 1.47565 1.41722 1.86508 1.56641 1.41858 1.42533 1.23608 0.95965 0.81953 1.05181 1.22676 0.94885 0.98872 1.03362 1.21110 0.87061 0.88897 0.99005 1.98376 1.06562 1.98597 1.96467 1.66145 1.07125 1.31369 1.21954 0.92396 0.92567 0.86893 0.75006 0.82808 0.90557 0.91635 0.90736 0.86180 0.85841 0.92121 0.91810 0.84469 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 9.92 127.77 1.27 2.61 16 2 N -0.72 -15.64 5.89 -366.62 -2.16 -17.80 16 3 C 0.41 12.58 7.65 133.04 1.02 13.60 16 4 C -0.19 -6.33 8.91 22.80 0.20 -6.13 16 5 C -0.02 -0.99 5.60 -19.91 -0.11 -1.10 16 6 C 0.52 23.10 7.45 86.84 0.65 23.75 16 7 O -0.60 -28.04 16.36 -3.91 -0.06 -28.11 16 8 N -0.45 -20.34 2.15 -638.64 -1.37 -21.71 16 9 C -0.35 -16.71 6.76 84.13 0.57 -16.15 16 10 H 0.11 5.41 6.03 -2.91 -0.02 5.39 16 11 C 0.05 2.57 5.35 84.98 0.45 3.03 16 12 N -0.87 -44.53 13.95 21.69 0.30 -44.23 16 13 Si 0.90 41.05 24.92 68.60 1.71 42.76 16 14 H -0.27 -12.11 6.72 99.48 0.67 -11.44 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 17 C 0.11 4.70 3.52 86.38 0.30 5.01 16 18 C -0.12 -4.04 6.14 29.85 0.18 -3.85 16 19 C 0.47 16.17 7.96 71.24 0.57 16.74 16 20 O -0.54 -21.35 15.73 21.95 0.35 -21.00 16 21 O -0.36 -10.07 10.57 -51.42 -0.54 -10.62 16 22 C 0.03 0.52 10.56 113.37 1.20 1.72 16 23 C -0.17 -7.11 7.57 22.67 0.17 -6.93 16 24 C 0.20 7.57 7.26 84.63 0.61 8.18 16 25 Cl -0.03 -0.98 29.10 -2.72 -0.08 -1.06 16 26 N -0.54 -18.88 10.34 -184.31 -1.91 -20.78 16 27 H 0.06 0.89 7.92 -2.39 -0.02 0.87 16 28 H 0.06 0.89 7.93 -2.39 -0.02 0.87 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.41 7.63 8.95 -92.71 -0.83 6.80 16 31 H 0.15 4.71 6.64 -2.91 -0.02 4.69 16 32 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 33 H 0.07 2.96 3.24 -2.39 -0.01 2.95 16 34 H 0.07 3.29 7.31 -2.38 -0.02 3.28 16 35 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 36 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 37 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 38 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 39 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.17 7.52 5.25 -2.91 -0.02 7.51 16 Total: -1.00 -62.50 354.98 3.57 -58.93 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.25 Total: 23.13 kcal Atomic # 6 Polarization: 33.40 SS G_CDS: 7.08 Total: 40.48 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -5.13 Total: -104.52 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -0.26 Total: -59.72 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.71 Total: 42.76 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -62.50 3.57 -58.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.821 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds