Wall clock time and date at job start Sat Apr 11 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99961 * 2 1 4 4 O 1.20829 * 119.99850 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47148 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47053 * 179.97438 * 6 5 3 8 8 C 1.36939 * 120.00508 * 269.99991 * 7 6 5 9 9 H 1.08009 * 119.99431 * 21.70120 * 8 7 6 10 10 C 1.38806 * 120.00606 * 201.70739 * 8 7 6 11 11 N 1.31625 * 119.99851 * 9.74196 * 10 8 7 12 12 Si 1.86799 * 120.00371 * 189.75017 * 10 8 7 13 13 H 1.48500 * 109.47106 * 89.99584 * 12 10 8 14 14 H 1.48492 * 109.47170 * 209.99952 * 12 10 8 15 15 H 1.48502 * 109.46972 * 329.99623 * 12 10 8 16 16 C 1.46504 * 119.99966 * 89.99870 * 7 6 5 17 17 C 1.50704 * 109.46834 * 83.40638 * 16 7 6 18 18 O 1.21288 * 120.00055 * 0.02562 * 17 16 7 19 19 N 1.34780 * 119.99926 * 179.97438 * 17 16 7 20 20 C 1.40003 * 119.99970 * 185.35219 * 19 17 16 21 21 C 1.39194 * 120.49144 * 16.97276 * 20 19 17 22 22 C 1.38568 * 118.37433 * 180.24002 * 21 20 19 23 23 C 1.38217 * 119.26317 * 359.46617 * 22 21 20 24 24 N 1.31901 * 120.92959 * 0.27371 * 23 22 21 25 25 C 1.31891 * 121.77666 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 119.68042 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47784 * 300.00004 * 1 2 3 29 29 H 1.09005 * 109.47025 * 60.00158 * 1 2 3 30 30 H 1.09003 * 109.47049 * 59.99844 * 5 3 2 31 31 H 1.09001 * 109.46718 * 300.00539 * 5 3 2 32 32 H 1.09007 * 109.46914 * 59.99932 * 6 5 3 33 33 H 1.09003 * 109.47115 * 300.00395 * 6 5 3 34 34 H 0.96995 * 119.99782 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.47339 * 323.40918 * 16 7 6 36 36 H 1.08996 * 109.47282 * 203.40622 * 16 7 6 37 37 H 0.96994 * 119.99949 * 5.35909 * 19 17 16 38 38 H 1.07999 * 120.81757 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.36651 * 179.73948 * 22 21 20 40 40 H 1.07997 * 119.53864 * 180.25760 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4630 2.8188 0.0023 8 6 6.1459 2.8546 1.1887 9 1 5.6813 2.4838 2.0905 10 6 7.4351 3.3673 1.2325 11 7 7.9307 3.9920 0.1853 12 14 8.4666 3.1707 2.7773 13 1 9.2392 1.9049 2.6989 14 1 9.4040 4.3163 2.8957 15 1 7.5766 3.1346 3.9655 16 6 6.1955 2.8573 -1.2659 17 6 6.2318 4.2727 -1.7823 18 8 5.6986 5.1617 -1.1527 19 7 6.8575 4.5506 -2.9432 20 6 6.9888 5.8784 -3.3672 21 6 6.8072 6.9274 -2.4705 22 6 6.9427 8.2247 -2.9383 23 6 7.2622 8.4339 -4.2667 24 7 7.4333 7.4184 -5.0909 25 6 7.3081 6.1686 -4.6886 26 17 7.5447 4.8735 -5.8201 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 3.6100 3.2360 0.8911 33 1 3.6106 3.2365 -0.8889 34 1 8.8314 4.3507 0.2160 35 1 5.6961 2.2178 -1.9936 36 1 7.2138 2.5019 -1.1082 37 1 7.2167 3.8307 -3.4850 38 1 6.5624 6.7352 -1.4363 39 1 6.8046 9.0628 -2.2714 40 1 7.3730 9.4430 -4.6351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879473823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:58 Heat of formation + Delta-G solvation = -73.672760 kcal Electronic energy + Delta-G solvation = -27332.499693 eV Core-core repulsion = 23174.126714 eV Total energy + Delta-G solvation = -4158.372979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70045 -41.42191 -40.00710 -37.84305 -37.67783 -37.19959 -35.69913 -33.96387 -33.08632 -31.85744 -31.00003 -28.80631 -28.31240 -26.08853 -24.97355 -24.29448 -23.05772 -21.61752 -21.16268 -19.35954 -18.77484 -18.48891 -17.98587 -17.85955 -17.53570 -17.44816 -16.86779 -16.57418 -15.93802 -15.66577 -15.49431 -15.33843 -14.88585 -14.80817 -14.61301 -14.21744 -13.99989 -13.63679 -13.40370 -13.34704 -13.00640 -12.81598 -12.77364 -12.75322 -12.41366 -12.33101 -12.19684 -11.97727 -11.88943 -11.78642 -11.64669 -11.52475 -11.06197 -10.73520 -10.51675 -10.08555 -9.07988 -8.83157 -7.88587 -5.30330 -0.06879 0.22226 0.77024 1.22435 1.50665 1.53526 1.59427 1.79932 2.11468 2.28192 2.55521 2.78971 3.34658 3.55221 3.59133 3.78460 3.96205 4.03695 4.15805 4.20237 4.32741 4.35588 4.36299 4.39562 4.54191 4.70546 4.74770 4.83394 4.99570 5.02576 5.20939 5.25333 5.29727 5.37244 5.45135 5.66278 5.80242 6.28156 6.61925 6.71475 6.78332 7.11755 7.60334 7.81219 8.21050 9.17649 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.003774 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.352242 B = 7417.914688 C = 9411.731751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.544 6.544 5 C -0.120 4.120 6 C 0.168 3.832 7 N -0.578 5.578 8 C -0.257 4.257 9 H 0.076 0.924 10 C -0.038 4.038 11 N -0.922 5.922 12 Si 0.969 3.031 13 H -0.281 1.281 14 H -0.306 1.306 15 H -0.279 1.279 16 C 0.165 3.835 17 C 0.527 3.473 18 O -0.544 6.544 19 N -0.665 5.665 20 C 0.135 3.865 21 C -0.117 4.117 22 C -0.136 4.136 23 C 0.080 3.920 24 N -0.472 5.472 25 C 0.111 3.889 26 Cl -0.027 7.027 27 H 0.134 0.866 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.247 0.753 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.415 0.585 38 H 0.149 0.851 39 H 0.168 0.832 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 -3.174 -7.984 9.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.435 6.435 5 C -0.159 4.159 6 C 0.042 3.958 7 N -0.297 5.297 8 C -0.386 4.386 9 H 0.094 0.906 10 C -0.233 4.233 11 N -0.568 5.568 12 Si 0.799 3.201 13 H -0.207 1.207 14 H -0.233 1.233 15 H -0.204 1.204 16 C 0.034 3.966 17 C 0.317 3.683 18 O -0.420 6.420 19 N -0.309 5.309 20 C 0.033 3.967 21 C -0.145 4.145 22 C -0.157 4.157 23 C -0.079 4.079 24 N -0.182 5.182 25 C -0.056 4.056 26 Cl 0.002 6.998 27 H 0.152 0.848 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.253 0.747 38 H 0.166 0.834 39 H 0.185 0.815 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.832 -2.298 -8.387 9.948 hybrid contribution 0.542 -0.186 1.453 1.562 sum -4.289 -2.484 -6.934 8.523 Atomic orbital electron populations 1.23529 0.75171 1.05625 1.02317 1.86529 1.24819 1.32872 1.83814 1.24219 0.92646 0.80998 0.70765 1.90646 1.68127 1.37571 1.47117 1.22020 0.85260 1.01658 1.06998 1.20435 0.83607 0.92170 0.99632 1.43842 1.00244 1.83597 1.01988 1.19488 0.96768 1.33974 0.88400 0.90603 1.25499 0.99911 0.98068 0.99844 1.69827 1.16094 1.40513 1.30388 0.85243 0.78348 0.76492 0.80025 1.20711 1.23291 1.20412 1.20729 0.99804 0.89187 0.86834 1.22740 0.73866 0.94763 0.76947 1.90387 1.46259 1.48946 1.56393 1.43930 1.57579 1.05145 1.24261 1.18680 0.98955 0.87364 0.91676 1.22353 0.98524 0.92130 1.01515 1.22510 0.98069 0.97173 0.97899 1.23107 0.97174 0.98097 0.89516 1.66938 1.14172 0.98069 1.39052 1.21252 1.07217 0.90262 0.86880 1.98355 1.95402 1.44967 1.61122 0.84833 0.92328 0.92133 0.86071 0.86857 0.94679 0.94503 0.94320 0.90522 0.87760 0.74732 0.83364 0.81467 0.78118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.33 10.57 -51.45 -0.54 -9.87 16 3 C 0.47 14.51 7.96 71.24 0.57 15.08 16 4 O -0.54 -20.35 15.73 21.96 0.35 -20.00 16 5 C -0.12 -3.64 6.13 29.85 0.18 -3.46 16 6 C 0.17 6.74 4.90 86.38 0.42 7.16 16 7 N -0.58 -25.75 2.04 -706.33 -1.44 -27.19 16 8 C -0.26 -12.68 9.69 84.03 0.81 -11.87 16 9 H 0.08 3.69 7.85 -2.91 -0.02 3.66 16 10 C -0.04 -1.91 5.12 84.86 0.43 -1.48 16 11 N -0.92 -47.82 8.86 21.65 0.19 -47.63 16 12 Si 0.97 42.40 29.56 68.60 2.03 44.43 16 13 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.31 -13.99 7.11 99.48 0.71 -13.29 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 16 C 0.16 6.71 5.37 85.63 0.46 7.17 16 17 C 0.53 22.77 5.84 87.66 0.51 23.28 16 18 O -0.54 -27.65 12.95 -3.06 -0.04 -27.69 16 19 N -0.66 -24.26 5.29 -303.09 -1.60 -25.86 16 20 C 0.14 4.92 6.55 38.25 0.25 5.17 16 21 C -0.12 -4.37 8.93 22.58 0.20 -4.17 16 22 C -0.14 -3.84 10.10 22.34 0.23 -3.61 16 23 C 0.08 2.02 11.17 84.68 0.95 2.97 16 24 N -0.47 -14.42 10.33 -186.22 -1.92 -16.35 16 25 C 0.11 3.61 7.29 84.87 0.62 4.23 16 26 Cl -0.03 -0.73 27.85 -2.72 -0.08 -0.81 16 27 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.06 1.14 8.13 -2.38 -0.02 1.12 16 30 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.03 1.56 8.00 -2.38 -0.02 1.54 16 33 H 0.04 1.54 8.03 -2.39 -0.02 1.52 16 34 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 35 H 0.08 2.49 8.12 -2.39 -0.02 2.48 16 36 H 0.10 4.57 6.32 -2.39 -0.02 4.55 16 37 H 0.42 12.81 7.58 -92.71 -0.70 12.11 16 38 H 0.15 6.76 5.35 -2.94 -0.02 6.74 16 39 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.20 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -66.99 360.48 4.17 -62.83 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.39 Total: 25.97 kcal Atomic # 6 Polarization: 35.34 SS G_CDS: 6.83 Total: 42.17 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.77 Total: -117.02 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -0.24 Total: -57.56 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -66.99 4.17 -62.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879473823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.847 kcal (2) G-P(sol) polarization free energy of solvation -66.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds