Wall clock time and date at job start Sat Apr 11 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34226 * 117.00020 * 2 1 4 4 O 1.20830 * 120.00011 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00066 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.54840 * 325.67380 * 5 3 2 7 7 C 1.52999 * 117.49802 * 180.02562 * 5 3 2 8 8 H 1.09000 * 117.49962 * 145.00382 * 7 5 3 9 9 C 1.52998 * 117.50054 * 359.97438 * 7 5 3 10 10 N 1.46496 * 109.47161 * 175.00116 * 9 7 5 11 11 S 1.65598 * 120.00284 * 165.00566 * 10 9 7 12 12 O 1.42104 * 104.27651 * 308.93138 * 11 10 9 13 13 O 1.42095 * 104.28128 * 181.07550 * 11 10 9 14 14 C 1.81399 * 104.45041 * 64.99948 * 11 10 9 15 15 C 1.52997 * 109.47147 * 180.02562 * 14 11 10 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 11 17 17 C 1.50698 * 109.47184 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00192 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47454 * 59.99696 * 21 19 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99689 * 21 19 17 25 25 C 1.52996 * 117.49672 * 111.37546 * 5 3 2 26 26 F 1.39903 * 117.50108 * 0.02562 * 25 5 3 27 27 F 1.39895 * 117.50099 * 214.98072 * 25 5 3 28 28 H 1.09000 * 109.46381 * 60.00029 * 1 2 3 29 29 H 1.08994 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46748 * 300.00217 * 1 2 3 31 31 H 1.09004 * 109.46612 * 55.00692 * 9 7 5 32 32 H 1.08998 * 109.47783 * 295.00881 * 9 7 5 33 33 H 0.97006 * 120.00211 * 345.00144 * 10 9 7 34 34 H 1.08996 * 109.47243 * 60.00524 * 14 11 10 35 35 H 1.09001 * 109.47190 * 300.00108 * 14 11 10 36 36 H 1.09001 * 109.47502 * 60.00399 * 15 14 11 37 37 H 1.09001 * 109.47289 * 300.00196 * 15 14 11 38 38 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 39 39 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 40 40 H 0.96996 * 120.00505 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0782 0.4885 0.5555 7 6 4.2008 2.6671 0.0012 8 1 5.1301 2.7965 0.5560 9 6 3.2589 3.8727 0.0005 10 7 4.0423 5.1046 0.1215 11 16 3.3444 6.5668 -0.2208 12 8 2.7569 6.3835 -1.5016 13 8 4.3893 7.5091 -0.0222 14 6 2.0608 6.7633 1.0459 15 6 1.3347 8.0933 0.8342 16 6 0.2525 8.2593 1.9030 17 6 -0.4631 9.5690 1.6940 18 1 -0.1746 10.2182 0.8806 19 6 -1.4854 9.9389 2.5420 20 7 -1.8364 9.1486 3.5328 21 14 -2.3720 11.5627 2.2834 22 1 -2.9997 11.5752 0.9377 23 1 -3.4224 11.7238 3.3207 24 1 -1.3989 12.6798 2.3861 25 6 4.2465 1.8055 -1.2630 26 9 3.4236 2.1809 -2.3304 27 9 5.4778 1.2444 -1.6182 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.5701 3.7960 0.8419 32 1 2.6935 3.8917 -0.9312 33 1 4.9700 5.0639 0.4022 34 1 2.5209 6.7535 2.0340 35 1 1.3464 5.9436 0.9695 36 1 0.8745 8.1028 -0.1539 37 1 2.0488 8.9133 0.9103 38 1 -0.4617 7.4394 1.8272 39 1 0.7130 8.2500 2.8908 40 1 -2.5554 9.4090 4.1296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882656776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:18 Heat of formation + Delta-G solvation = -256.042939 kcal Electronic energy + Delta-G solvation = -27883.892712 eV Core-core repulsion = 23268.966088 eV Total energy + Delta-G solvation = -4614.926624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.94480 -48.61715 -41.80827 -38.84088 -38.19096 -37.25636 -37.07654 -36.47299 -35.30705 -34.17054 -29.66547 -29.35567 -27.61997 -25.63790 -25.42277 -22.80750 -22.45384 -21.69618 -20.41775 -19.57203 -18.95620 -18.60448 -18.43612 -18.20775 -17.53119 -17.40359 -17.19376 -17.14992 -16.55418 -16.47589 -16.18373 -15.58408 -15.29871 -15.04312 -14.82931 -14.75808 -14.49149 -14.40998 -14.25425 -14.08049 -13.69926 -13.52941 -13.23071 -13.14549 -13.08764 -13.02031 -12.97980 -12.73494 -12.65733 -12.27408 -12.14090 -11.88193 -11.75441 -11.71431 -11.41857 -11.34372 -11.07443 -10.57507 -10.39736 -8.22954 -6.34160 -0.77782 0.58096 1.33789 1.39673 1.42491 1.50351 1.69089 1.76293 1.98545 2.39499 2.68963 2.80543 3.10395 3.12808 3.24711 3.27876 3.61091 3.72516 3.87392 3.92571 4.19371 4.27535 4.32651 4.36159 4.38654 4.43230 4.53650 4.65989 4.72354 4.91340 4.97223 5.06197 5.23299 5.44572 5.62368 5.78846 6.10098 6.19225 6.48646 6.81151 7.35057 8.88449 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.002772 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.890833 B =10099.361513 C =11610.420820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.483 3.517 4 O -0.512 6.512 5 C -0.141 4.141 6 H 0.211 0.789 7 C -0.105 4.105 8 H 0.200 0.800 9 C 0.131 3.869 10 N -1.107 6.107 11 S 2.631 3.369 12 O -0.993 6.993 13 O -0.985 6.985 14 C -0.609 4.609 15 C -0.107 4.107 16 C 0.032 3.968 17 C -0.555 4.555 18 H 0.060 0.940 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.266 1.266 25 C 0.212 3.788 26 F -0.167 7.167 27 F -0.145 7.145 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.431 0.569 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.001 0.999 39 H 0.005 0.995 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.695 -23.967 -4.477 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.325 3.675 4 O -0.400 6.400 5 C -0.161 4.161 6 H 0.228 0.772 7 C -0.125 4.125 8 H 0.217 0.783 9 C 0.005 3.995 10 N -0.870 5.870 11 S 2.726 3.274 12 O -0.983 6.983 13 O -0.975 6.975 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.593 4.593 18 H 0.078 0.922 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.191 1.191 25 C 0.175 3.825 26 F -0.147 7.147 27 F -0.125 7.125 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.269 0.731 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.019 0.981 39 H 0.023 0.977 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.422 -23.146 -5.184 27.253 hybrid contribution -0.968 0.472 0.348 1.132 sum 12.454 -22.673 -4.836 26.317 Atomic orbital electron populations 1.23631 0.74066 1.06037 1.02799 1.86450 1.25274 1.31762 1.83221 1.22576 0.90470 0.81887 0.72527 1.90766 1.67361 1.36788 1.45061 1.23541 0.89642 1.02701 1.00191 0.77222 1.24186 1.03403 0.89727 0.95169 0.78326 1.21192 0.92444 0.81362 1.04485 1.55302 1.24008 1.20732 1.86951 1.04166 0.75038 0.72690 0.75518 1.93542 1.80234 1.85337 1.39182 1.93544 1.54793 1.61822 1.87370 1.30494 1.17262 1.06868 1.19371 1.21322 0.98803 0.93394 1.01121 1.18953 0.92693 0.95588 0.93437 1.21724 1.17994 1.05629 1.13907 0.92157 1.25936 0.97804 1.01056 0.94719 1.70061 1.30302 1.38935 1.17661 0.85530 0.78219 0.79375 0.78135 1.19327 1.20543 1.19129 1.20036 0.79344 1.02564 0.80532 1.93064 1.71272 1.91474 1.58912 1.93093 1.40791 1.85469 1.93142 0.92199 0.84659 0.91475 0.87642 0.90718 0.73065 0.82997 0.84214 0.91802 0.91237 0.98101 0.97652 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.35 -5.25 10.57 -51.38 -0.54 -5.79 16 3 C 0.48 8.18 7.35 71.24 0.52 8.71 16 4 O -0.51 -11.99 12.86 21.95 0.28 -11.71 16 5 C -0.14 -1.41 6.28 -11.54 -0.07 -1.48 16 6 H 0.21 0.26 8.14 -2.39 -0.02 0.24 16 7 C -0.10 -1.15 5.89 -10.78 -0.06 -1.21 16 8 H 0.20 0.43 7.98 -2.39 -0.02 0.41 16 9 C 0.13 2.46 4.66 86.38 0.40 2.86 16 10 N -1.11 -20.93 5.88 -187.50 -1.10 -22.03 16 11 S 2.63 76.32 5.46 -56.49 -0.31 76.02 16 12 O -0.99 -36.42 17.50 -127.65 -2.23 -38.65 16 13 O -0.99 -33.30 18.08 -127.65 -2.31 -35.61 16 14 C -0.61 -18.72 6.07 71.98 0.44 -18.29 16 15 C -0.11 -4.46 5.16 30.60 0.16 -4.30 16 16 C 0.03 1.66 4.97 29.85 0.15 1.80 16 17 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 21 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.21 3.22 5.14 30.61 0.16 3.37 16 26 F -0.17 -3.85 16.01 44.97 0.72 -3.13 16 27 F -0.14 -2.09 17.60 44.97 0.79 -1.30 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.11 1.87 6.93 -2.38 -0.02 1.85 16 32 H 0.07 1.87 6.03 -2.39 -0.01 1.86 16 33 H 0.43 5.25 8.51 -96.74 -0.82 4.43 16 34 H 0.15 3.95 8.14 -2.39 -0.02 3.93 16 35 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 36 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -83.13 365.65 1.45 -81.68 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.26 Total: 7.97 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 3.58 Total: -38.14 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -0.82 Total: -77.93 kcal Atomic # 8 Polarization: -86.95 SS G_CDS: -4.80 Total: -91.76 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.51 Total: -4.43 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 76.32 SS G_CDS: -0.31 Total: 76.02 kcal Total: -83.13 1.45 -81.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882656776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.365 kcal (2) G-P(sol) polarization free energy of solvation -83.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds