Wall clock time and date at job start Sat Apr 11 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.58317 * 2 1 4 4 C 1.53246 * 109.58031 * 239.72787 * 2 1 3 5 5 N 1.46375 * 109.48518 * 182.40680 * 4 2 1 6 6 S 1.65595 * 119.64897 * 245.06566 * 5 4 2 7 7 O 1.42103 * 106.40149 * 203.54350 * 6 5 4 8 8 O 1.42096 * 106.40338 * 336.46081 * 6 5 4 9 9 C 1.76195 * 107.21768 * 90.00447 * 6 5 4 10 10 C 1.38233 * 120.00100 * 269.72255 * 9 6 5 11 11 C 1.38230 * 120.00318 * 179.78762 * 10 9 6 12 12 C 1.38241 * 119.99830 * 0.47015 * 11 10 9 13 13 C 1.50700 * 120.00136 * 179.79090 * 12 11 10 14 14 C 1.50693 * 109.47054 * 269.97703 * 13 12 11 15 15 H 1.08003 * 120.00237 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00239 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00299 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99933 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46757 * 90.00286 * 18 16 14 20 20 H 1.48500 * 109.47534 * 210.00295 * 18 16 14 21 21 H 1.48500 * 109.47341 * 330.00766 * 18 16 14 22 22 C 1.38233 * 119.99944 * 359.76437 * 12 11 10 23 23 C 1.38238 * 120.00054 * 0.02562 * 22 12 11 24 24 C 1.46378 * 120.70596 * 65.09361 * 5 4 2 25 25 C 1.53242 * 109.48749 * 294.90841 * 24 5 4 26 26 S 1.81741 * 109.69897 * 120.34835 * 2 1 3 27 27 H 1.08998 * 109.46741 * 180.27391 * 1 2 3 28 28 H 1.09005 * 109.46976 * 300.26691 * 1 2 3 29 29 H 1.08999 * 109.47449 * 60.27035 * 1 2 3 30 30 H 1.08998 * 109.46853 * 302.41814 * 4 2 1 31 31 H 1.09002 * 109.46370 * 62.40598 * 4 2 1 32 32 H 1.08003 * 119.99993 * 0.02562 * 10 9 6 33 33 H 1.08003 * 120.00495 * 180.25415 * 11 10 9 34 34 H 1.09004 * 109.46917 * 29.97238 * 13 12 11 35 35 H 1.09002 * 109.47211 * 149.97219 * 13 12 11 36 36 H 0.97000 * 120.00151 * 179.97438 * 17 16 14 37 37 H 1.07997 * 119.99951 * 180.02562 * 22 12 11 38 38 H 1.07996 * 120.00192 * 179.97438 * 23 22 12 39 39 H 1.08996 * 109.47147 * 174.90451 * 24 5 4 40 40 H 1.09006 * 109.46945 * 54.90996 * 24 5 4 41 41 H 1.09000 * 109.58062 * 297.86133 * 25 24 5 42 42 H 1.08997 * 109.69889 * 177.51453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2470 5 7 3.5062 -0.7769 -1.2160 6 16 4.3775 0.0325 -2.3683 7 8 5.6431 -0.6098 -2.4392 8 8 3.5180 0.1820 -3.4899 9 6 4.6772 1.6555 -1.7512 10 6 3.7798 2.6727 -2.0173 11 6 4.0126 3.9449 -1.5295 12 6 5.1479 4.2022 -0.7838 13 6 5.4041 5.5903 -0.2559 14 6 6.1982 6.3742 -1.2688 15 1 6.4887 5.9133 -2.2013 16 6 6.5548 7.6796 -1.0046 17 7 7.2474 8.3639 -1.8887 18 14 6.0531 8.4767 0.6085 19 1 7.1099 8.2436 1.6255 20 1 5.8754 9.9369 0.4050 21 1 4.7752 7.8832 1.0776 22 6 6.0477 3.1862 -0.5218 23 6 5.8127 1.9129 -1.0060 24 6 4.2069 -1.5342 -0.1777 25 6 3.9370 -0.8973 1.1897 26 16 2.1426 -0.8645 1.4766 27 1 -0.3633 -1.0277 0.0049 28 1 -0.3633 0.5180 0.8876 29 1 -0.3634 0.5096 -0.8924 30 1 1.6463 -1.7427 -1.2647 31 1 1.7168 -0.1942 -2.1394 32 1 2.8948 2.4726 -2.6030 33 1 3.3094 4.7388 -1.7339 34 1 4.4532 6.0909 -0.0735 35 1 5.9659 5.5267 0.6760 36 1 7.4980 9.2823 -1.7030 37 1 6.9344 3.3871 0.0611 38 1 6.5159 1.1191 -0.8017 39 1 5.2780 -1.5217 -0.3792 40 1 3.8496 -2.5641 -0.1756 41 1 4.3276 0.1202 1.2023 42 1 4.4210 -1.4841 1.9703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885001599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:20 Heat of formation + Delta-G solvation = -53.529632 kcal Electronic energy + Delta-G solvation = -25696.445117 eV Core-core repulsion = 22087.282531 eV Total energy + Delta-G solvation = -3609.162587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.97697 -37.94429 -37.41584 -35.93199 -33.85547 -33.74146 -31.79941 -30.74049 -30.56007 -28.03536 -26.69990 -23.62643 -23.10938 -22.50477 -22.16539 -20.74585 -19.31843 -18.28221 -17.67515 -16.95261 -16.57288 -16.34483 -15.41440 -15.21351 -15.03601 -14.72026 -14.46469 -14.45967 -14.34168 -13.93959 -13.41711 -13.27476 -13.17178 -12.79015 -12.67120 -12.58883 -12.48746 -12.15412 -11.99603 -11.95719 -11.84438 -11.82126 -11.64674 -11.12347 -11.09939 -10.98856 -10.58107 -10.30407 -10.21842 -10.04880 -9.62958 -9.54111 -8.75014 -8.71535 -8.51788 -7.93840 -6.22246 -4.24206 0.26753 1.16680 1.42344 1.64763 2.20981 2.73418 3.17373 3.26177 3.26607 3.60348 3.93371 4.10451 4.27219 4.29993 4.34633 4.55939 4.64167 4.79782 4.91467 5.00811 5.03110 5.08994 5.12396 5.21570 5.29972 5.34841 5.46191 5.50210 5.51622 5.63144 5.65040 5.74621 5.76897 6.07504 6.14950 6.16442 6.37217 6.62883 6.63491 6.76242 7.21263 7.23673 7.49105 8.30293 8.80964 9.35842 10.90228 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015020 B = 0.003377 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.673443 B = 8290.320367 C = 9018.728399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 H 0.096 0.904 4 C 0.119 3.881 5 N -1.001 6.001 6 S 2.691 3.309 7 O -0.958 6.958 8 O -0.958 6.958 9 C -0.703 4.703 10 C -0.023 4.023 11 C -0.141 4.141 12 C 0.033 3.967 13 C 0.006 3.994 14 C -0.522 4.522 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.879 3.121 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.265 1.265 22 C -0.142 4.142 23 C -0.023 4.023 24 C 0.116 3.884 25 C -0.106 4.106 26 S -0.252 6.252 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 -20.551 5.916 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.205 4.205 3 H 0.114 0.886 4 C -0.008 4.008 5 N -0.837 5.837 6 S 2.785 3.215 7 O -0.948 6.948 8 O -0.948 6.948 9 C -0.792 4.792 10 C -0.042 4.042 11 C -0.160 4.160 12 C 0.032 3.968 13 C -0.031 4.031 14 C -0.559 4.559 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.531 5.531 18 Si 0.705 3.295 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.189 1.189 22 C -0.160 4.160 23 C -0.042 4.042 24 C -0.011 4.011 25 C -0.256 4.256 26 S -0.025 6.025 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.845 -21.154 5.950 24.964 hybrid contribution 0.646 1.841 0.352 1.983 sum -11.199 -19.313 6.301 23.197 Atomic orbital electron populations 1.21575 0.90974 1.03292 1.03309 1.23639 1.00007 1.02010 0.94870 0.88558 1.21676 0.78571 1.02628 0.97925 1.57632 1.15162 1.64584 1.46328 1.01928 0.72973 0.73616 0.73027 1.93556 1.41043 1.74573 1.85657 1.93554 1.67187 1.86922 1.47163 1.30397 1.06524 1.22262 1.20032 1.20747 0.96575 0.92530 0.94368 1.21221 0.98873 0.96352 0.99562 1.20718 0.90551 0.96399 0.89099 1.18986 0.98166 0.88662 0.97270 1.20807 1.34479 0.96890 1.03745 0.90678 1.24978 0.94304 0.96890 0.96779 1.69884 1.37710 1.10523 1.34995 0.86796 0.79711 0.78862 0.84084 1.20003 1.21009 1.18946 1.21224 1.00179 0.92309 1.02335 1.20751 0.93549 0.97709 0.92224 1.21551 0.98394 0.95880 0.85258 1.23908 0.95007 1.05685 1.00981 1.86834 1.06220 1.77393 1.32084 0.91372 0.91284 0.90562 0.89179 0.87490 0.85220 0.85195 0.94794 0.95233 0.92321 0.85196 0.85213 0.87428 0.89182 0.89035 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 9.23 37.16 0.34 -0.54 16 2 C -0.07 -0.63 3.32 -26.60 -0.09 -0.72 16 3 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.00 5.54 -3.98 -0.02 0.98 16 5 N -1.00 -9.79 3.10 -114.28 -0.35 -10.14 16 6 S 2.69 35.49 5.68 -107.50 -0.61 34.88 16 7 O -0.96 -14.55 15.77 -57.17 -0.90 -15.45 16 8 O -0.96 -14.56 15.76 -57.17 -0.90 -15.46 16 9 C -0.70 -10.38 5.97 -39.58 -0.24 -10.62 16 10 C -0.02 -0.35 9.52 -39.59 -0.38 -0.72 16 11 C -0.14 -2.46 9.70 -39.58 -0.38 -2.85 16 12 C 0.03 0.64 5.07 -104.62 -0.53 0.11 16 13 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 14 C -0.52 -14.18 9.65 -34.44 -0.33 -14.51 16 15 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 18 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 22 C -0.14 -2.47 9.70 -39.58 -0.38 -2.85 16 23 C -0.02 -0.35 9.52 -39.58 -0.38 -0.72 16 24 C 0.12 0.94 6.25 -3.98 -0.02 0.92 16 25 C -0.11 -0.85 6.67 37.28 0.25 -0.60 16 26 S -0.25 -2.34 21.67 -107.50 -2.33 -4.67 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.11 0.89 6.80 -51.93 -0.35 0.54 16 32 H 0.13 1.67 7.61 -52.48 -0.40 1.27 16 33 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 34 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 35 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.13 1.66 7.62 -52.49 -0.40 1.26 16 39 H 0.11 0.85 6.80 -51.93 -0.35 0.50 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -33.02 364.98 -11.96 -44.98 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.08 Total: 0.59 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: -2.38 Total: -30.19 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.42 Total: -35.96 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -1.80 Total: -30.91 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Atomic # 16 Polarization: 33.15 SS G_CDS: -2.94 Total: 30.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.02 -11.96 -44.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885001599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.553 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds