Wall clock time and date at job start Sat Apr 11 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.44932 * 2 1 4 4 C 1.54994 * 109.47143 * 120.21334 * 2 1 3 5 5 S 1.83989 * 100.82208 * 161.51070 * 4 2 1 6 6 C 1.83397 * 95.85065 * 324.57895 * 5 4 2 7 7 C 1.52945 * 109.60343 * 239.77338 * 2 1 3 8 8 H 1.09003 * 108.88731 * 330.61745 * 7 2 1 9 9 N 1.46497 * 108.88823 * 89.17287 * 7 2 1 10 10 S 1.65599 * 119.99915 * 217.12227 * 9 7 2 11 11 O 1.42105 * 106.40077 * 311.46178 * 10 9 7 12 12 O 1.42104 * 106.40241 * 178.54407 * 10 9 7 13 13 C 1.76200 * 107.21850 * 65.00480 * 10 9 7 14 14 C 1.38230 * 120.00186 * 89.99748 * 13 10 9 15 15 C 1.38234 * 119.99825 * 180.02562 * 14 13 10 16 16 C 1.38234 * 120.00204 * 359.95801 * 15 14 13 17 17 C 1.50701 * 120.00195 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.46848 * 89.99989 * 17 16 15 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 C 1.38237 * 119.99973 * 0.27711 * 16 15 14 27 27 C 1.38234 * 119.99712 * 359.53576 * 26 16 15 28 28 H 1.09000 * 109.46837 * 180.22740 * 1 2 3 29 29 H 1.08998 * 109.46886 * 300.22773 * 1 2 3 30 30 H 1.08998 * 109.46515 * 60.23018 * 1 2 3 31 31 H 1.09002 * 111.23072 * 43.60306 * 4 2 1 32 32 H 1.08997 * 111.14921 * 279.37881 * 4 2 1 33 33 H 1.09001 * 110.34486 * 260.87766 * 6 5 4 34 34 H 1.08996 * 110.43291 * 138.66472 * 6 5 4 35 35 H 0.97006 * 119.99744 * 37.12762 * 9 7 2 36 36 H 1.08003 * 119.99876 * 0.02562 * 14 13 10 37 37 H 1.08002 * 119.99953 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.47060 * 330.00024 * 17 16 15 39 39 H 1.08998 * 109.47176 * 210.00671 * 17 16 15 40 40 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.99912 * 179.72830 * 26 16 15 42 42 H 1.08004 * 119.99785 * 180.21353 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0467 -0.7354 1.2628 5 16 3.7777 -1.1070 0.7622 6 6 3.4003 -1.4069 -1.0073 7 6 2.0432 -0.7253 -1.2449 8 1 1.3150 -1.4817 -1.5379 9 7 2.1835 0.2439 -2.3344 10 16 1.8155 -0.1973 -3.8876 11 8 2.4765 -1.4335 -4.1208 12 8 2.0191 0.9567 -4.6915 13 6 0.0878 -0.5397 -3.9371 14 6 -0.8090 0.4707 -4.2298 15 6 -2.1644 0.2022 -4.2681 16 6 -2.6231 -1.0770 -4.0146 17 6 -4.1008 -1.3697 -4.0558 18 6 -4.4934 -1.7771 -5.4525 19 1 -3.7474 -1.8203 -6.2323 20 6 -5.8050 -2.0948 -5.7349 21 7 -6.7135 -2.0418 -4.7856 22 14 -6.2916 -2.6005 -7.4660 23 1 -5.5355 -3.8174 -7.8573 24 1 -5.9782 -1.4981 -8.4104 25 1 -7.7478 -2.8888 -7.5067 26 6 -1.7266 -2.0864 -3.7171 27 6 -0.3709 -1.8187 -3.6826 28 1 -0.3633 -1.0277 0.0041 29 1 -0.3633 0.5174 0.8879 30 1 -0.3632 0.5103 -0.8921 31 1 1.4846 -1.6516 1.4437 32 1 2.0216 -0.0830 2.1356 33 1 3.3264 -2.4766 -1.2030 34 1 4.1655 -0.9584 -1.6409 35 1 2.4920 1.1441 -2.1460 36 1 -0.4506 1.4700 -4.4285 37 1 -2.8651 0.9917 -4.4964 38 1 -4.6562 -0.4770 -3.7681 39 1 -4.3303 -2.1792 -3.3630 40 1 -6.4608 -1.7795 -3.8865 41 1 -2.0853 -3.0848 -3.5148 42 1 0.3297 -2.6081 -3.4536 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885184482.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:43 Heat of formation + Delta-G solvation = -88.934421 kcal Electronic energy + Delta-G solvation = -25437.125866 eV Core-core repulsion = 21826.428013 eV Total energy + Delta-G solvation = -3610.697854 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35493 -39.19945 -38.32887 -37.04091 -35.97407 -34.19285 -33.27285 -32.05028 -30.60916 -28.92542 -28.07220 -25.52332 -24.60817 -23.82810 -22.75450 -21.59424 -20.57577 -19.18034 -18.96284 -18.42389 -17.96884 -17.21952 -16.70785 -16.52380 -15.87369 -15.73090 -15.66912 -15.44951 -15.21394 -15.05773 -14.60256 -14.53295 -13.94691 -13.89592 -13.57133 -13.55383 -13.48252 -13.32449 -13.23181 -13.20745 -13.02114 -12.65383 -12.56797 -12.51959 -12.15818 -12.12717 -11.98158 -11.86068 -11.67873 -11.14750 -11.08539 -10.63467 -10.60520 -10.03997 -9.98800 -8.74489 -8.73001 -6.48754 -0.73460 -0.15347 0.31483 0.83495 1.32525 1.50753 1.57018 1.77288 1.90663 2.42323 2.53854 2.73939 3.07731 3.21030 3.35149 3.60679 3.75221 3.79897 3.87546 3.91121 4.01642 4.12728 4.17782 4.37789 4.38896 4.47880 4.58206 4.69709 4.71150 4.76890 4.78376 4.83061 4.96303 5.00229 5.01731 5.09111 5.17208 5.22616 5.35505 5.72402 5.77783 5.89063 5.96459 6.07555 6.47629 7.30319 8.64940 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.002927 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.420272 B = 9562.324030 C =10373.714518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.108 0.892 4 C -0.052 4.052 5 S -0.332 6.332 6 C -0.082 4.082 7 C 0.149 3.851 8 H 0.100 0.900 9 N -1.094 6.094 10 S 2.721 3.279 11 O -0.976 6.976 12 O -0.983 6.983 13 C -0.697 4.697 14 C -0.014 4.014 15 C -0.154 4.154 16 C 0.003 3.997 17 C 0.032 3.968 18 C -0.609 4.609 19 H 0.045 0.955 20 C -0.029 4.029 21 N -0.931 5.931 22 Si 1.114 2.886 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.280 1.280 26 C -0.152 4.152 27 C -0.017 4.017 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.432 0.568 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.259 0.741 41 H 0.128 0.872 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.164 5.048 12.056 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 H 0.126 0.874 4 C -0.200 4.200 5 S -0.106 6.106 6 C -0.232 4.232 7 C 0.040 3.960 8 H 0.118 0.882 9 N -0.856 5.856 10 S 2.811 3.189 11 O -0.966 6.966 12 O -0.973 6.973 13 C -0.784 4.784 14 C -0.033 4.033 15 C -0.173 4.173 16 C 0.002 3.998 17 C -0.004 4.004 18 C -0.647 4.647 19 H 0.063 0.937 20 C -0.227 4.227 21 N -0.568 5.568 22 Si 0.935 3.065 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.206 1.206 26 C -0.171 4.171 27 C -0.036 4.036 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.270 0.730 36 H 0.173 0.827 37 H 0.144 0.856 38 H 0.027 0.973 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.146 0.854 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 19.484 4.310 11.014 22.792 hybrid contribution -0.769 0.672 0.630 1.200 sum 18.714 4.982 11.644 22.597 Atomic orbital electron populations 1.21897 0.92810 1.02904 1.03173 1.22205 0.97279 1.01309 0.90586 0.87355 1.24496 0.90618 1.04257 1.00654 1.88100 1.17945 1.92993 1.11555 1.24571 0.99956 1.05065 0.93604 1.21525 0.95544 0.90420 0.88463 0.88239 1.55472 1.82482 1.23702 1.23923 1.00960 0.72943 0.72626 0.72324 1.93562 1.72562 1.46161 1.84267 1.93556 1.85756 1.51041 1.66941 1.30749 1.25531 1.01469 1.20643 1.20991 0.92089 0.98796 0.91434 1.21256 0.96308 0.96768 1.02956 1.20583 0.96548 0.93808 0.88842 1.18424 0.89155 0.95865 0.96992 1.22161 0.96657 1.50598 0.95286 0.93656 1.27314 0.92983 0.93859 1.08555 1.70921 1.36651 1.45995 1.03195 0.82965 0.76192 0.77362 0.69998 1.19563 1.19614 1.20556 1.21254 0.93362 0.99402 1.03078 1.21022 0.95580 0.94859 0.92167 0.92185 0.90405 0.92546 0.87815 0.85563 0.87758 0.87255 0.72966 0.82662 0.85581 0.97262 0.97138 0.93121 0.85416 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.01 71.98 0.65 -1.15 16 2 C -0.09 -0.98 2.73 -10.13 -0.03 -1.01 16 3 H 0.11 0.94 7.79 -2.39 -0.02 0.92 16 4 C -0.05 -0.54 6.85 72.66 0.50 -0.04 16 5 S -0.33 -5.36 23.22 -56.49 -1.31 -6.68 16 6 C -0.08 -1.26 7.14 72.22 0.52 -0.74 16 7 C 0.15 2.05 2.67 45.21 0.12 2.17 16 8 H 0.10 1.37 6.79 -2.39 -0.02 1.36 16 9 N -1.09 -15.80 5.26 -168.47 -0.89 -16.68 16 10 S 2.72 61.42 5.63 -56.49 -0.32 61.10 16 11 O -0.98 -26.23 17.04 -128.00 -2.18 -28.41 16 12 O -0.98 -27.22 17.28 -128.00 -2.21 -29.43 16 13 C -0.70 -18.48 5.80 22.27 0.13 -18.35 16 14 C -0.01 -0.40 9.52 22.27 0.21 -0.19 16 15 C -0.15 -5.41 9.70 22.27 0.22 -5.19 16 16 C 0.00 0.10 5.07 -19.87 -0.10 0.00 16 17 C 0.03 1.60 4.42 29.10 0.13 1.73 16 18 C -0.61 -33.59 9.09 25.60 0.23 -33.36 16 19 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 20 C -0.03 -1.59 5.46 84.66 0.46 -1.13 16 21 N -0.93 -55.35 13.65 21.45 0.29 -55.06 16 22 Si 1.11 49.05 29.90 68.60 2.05 51.10 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 C -0.15 -5.25 9.70 22.27 0.22 -5.04 16 27 C -0.02 -0.48 8.87 22.27 0.20 -0.28 16 28 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.70 7.89 -2.39 -0.02 1.68 16 35 H 0.43 4.27 8.60 -96.74 -0.83 3.43 16 36 H 0.16 3.65 7.62 -2.91 -0.02 3.62 16 37 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.01 0.47 7.95 -2.39 -0.02 0.45 16 39 H 0.01 0.53 7.95 -2.39 -0.02 0.51 16 40 H 0.26 15.40 7.22 -92.70 -0.67 14.73 16 41 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.16 3.49 7.62 -2.91 -0.02 3.47 16 Total: -1.00 -71.30 371.41 -0.82 -72.12 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.30 Total: 14.51 kcal Atomic # 6 Polarization: -66.03 SS G_CDS: 3.45 Total: -62.58 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.59 Total: -71.74 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -4.39 Total: -57.84 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.05 Total: 51.10 kcal Atomic # 16 Polarization: 56.05 SS G_CDS: -1.63 Total: 54.42 kcal Total: -71.30 -0.82 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885184482.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.814 kcal (2) G-P(sol) polarization free energy of solvation -71.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds