Wall clock time and date at job start Sat Apr 11 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47519 * 2 1 4 4 C 1.53008 * 109.47150 * 239.99988 * 2 1 3 5 5 C 1.50699 * 109.46652 * 64.99957 * 4 2 1 6 6 H 1.08000 * 120.00714 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99983 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99808 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00391 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47230 * 90.00163 * 9 7 5 11 11 H 1.48506 * 109.47484 * 210.00134 * 9 7 5 12 12 H 1.48495 * 109.47120 * 330.00032 * 9 7 5 13 13 C 1.53002 * 109.47265 * 120.00469 * 2 1 3 14 14 N 1.46901 * 109.46638 * 294.99799 * 13 2 1 15 15 C 1.46897 * 110.99952 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.46480 * 325.01528 * 15 14 13 17 17 C 1.53147 * 109.46959 * 205.03066 * 15 14 13 18 18 C 1.53392 * 109.25175 * 170.48517 * 17 15 14 19 19 C 1.51044 * 108.21207 * 48.81620 * 18 17 15 20 20 N 1.30076 * 127.39411 * 164.01331 * 19 18 17 21 21 C 1.34316 * 109.22146 * 180.11340 * 20 19 18 22 22 C 1.34955 * 108.07000 * 359.97438 * 21 20 19 23 23 Br 1.89098 * 126.65987 * 180.02562 * 22 21 20 24 24 N 1.35505 * 123.96763 * 344.07936 * 19 18 17 25 25 C 1.46470 * 124.82020 * 359.84044 * 24 19 18 26 26 H 1.08996 * 109.47065 * 299.99930 * 1 2 3 27 27 H 1.08999 * 109.46756 * 59.99625 * 1 2 3 28 28 H 1.08995 * 109.46898 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46878 * 185.00121 * 4 2 1 30 30 H 1.08997 * 109.47254 * 305.00685 * 4 2 1 31 31 H 0.97003 * 119.99945 * 179.97438 * 8 7 5 32 32 H 1.08992 * 109.47256 * 175.00054 * 13 2 1 33 33 H 1.08994 * 109.47096 * 54.99642 * 13 2 1 34 34 H 1.00900 * 110.99974 * 56.04669 * 14 13 2 35 35 H 1.09004 * 109.50332 * 290.40932 * 17 15 14 36 36 H 1.08997 * 109.50781 * 50.54513 * 17 15 14 37 37 H 1.09004 * 109.70009 * 289.14220 * 18 17 15 38 38 H 1.08999 * 109.76202 * 168.52787 * 18 17 15 39 39 H 1.08000 * 125.96331 * 179.97438 * 21 20 19 40 40 H 1.09005 * 109.58858 * 223.10207 * 25 24 19 41 41 H 1.08994 * 109.70107 * 102.74937 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4997 0.5635 -5.2496 10 1 2.5652 1.5430 -5.5816 11 1 1.3130 -0.3701 -6.3892 12 1 0.2284 1.2848 -4.9873 13 6 2.0401 -0.7214 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 2.0810 -1.7081 3.5329 17 6 1.2346 -0.2229 4.8459 18 6 1.5781 -1.0937 6.0611 19 6 3.0783 -1.0894 6.2360 20 7 3.7521 -1.4538 7.2873 21 6 5.0645 -1.2991 7.0469 22 6 5.2068 -0.8194 5.7936 23 35 6.8328 -0.4109 4.9189 24 7 3.9508 -0.6873 5.2804 25 6 3.5710 -0.2060 3.9502 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1264 -0.7995 -1.2056 30 1 1.6054 -1.7198 -1.2953 31 1 2.9237 -1.8416 -4.7319 32 1 3.1263 -0.7996 1.2055 33 1 1.6055 -1.7198 1.2951 34 1 0.6529 0.1792 2.4752 35 1 1.4069 0.8256 5.0892 36 1 0.1880 -0.3680 4.5782 37 1 1.2304 -2.1130 5.8928 38 1 1.1026 -0.6857 6.9530 39 1 5.8659 -1.5202 7.7363 40 1 4.2319 -0.6424 3.2012 41 1 3.6481 0.8807 3.9167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898723263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:09 Heat of formation + Delta-G solvation = 43.065838 kcal Electronic energy + Delta-G solvation = -21467.148217 eV Core-core repulsion = 18235.242812 eV Total energy + Delta-G solvation = -3231.905405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.63512 -38.28059 -35.89306 -33.78967 -33.31919 -31.89734 -31.53446 -28.65069 -28.09226 -26.83492 -25.66797 -24.01200 -22.49099 -21.98187 -21.35722 -19.49553 -18.88797 -17.37404 -16.46870 -16.36103 -15.42469 -15.11544 -14.89096 -14.51375 -14.39567 -14.19227 -13.97468 -13.59927 -13.38895 -12.83181 -12.54330 -12.34252 -12.01987 -11.92988 -11.58141 -11.39424 -11.32805 -11.11387 -10.95828 -10.94728 -10.80885 -10.39677 -10.31331 -10.18757 -9.86827 -9.79168 -9.24734 -9.04386 -8.53961 -8.50130 -8.38120 -6.02899 -4.04519 1.04189 1.54300 2.50933 2.74912 3.29488 3.36160 3.38691 3.88383 3.94469 4.25317 4.35244 4.43634 4.76121 4.84864 4.94291 5.04924 5.14914 5.17816 5.33034 5.35786 5.43587 5.54414 5.58259 5.64232 5.78349 5.87463 5.92351 6.11175 6.24980 6.31711 6.41922 6.69985 6.80861 7.00532 7.05322 7.11873 7.36803 7.62318 7.68466 7.76910 7.96413 8.39534 9.01702 9.59356 11.08533 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.002708 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.382309 B =10338.311531 C =11866.410827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.681 5.681 15 C 0.076 3.924 16 H 0.057 0.943 17 C -0.128 4.128 18 C -0.032 4.032 19 C 0.229 3.771 20 N -0.485 5.485 21 C 0.020 3.980 22 C -0.037 4.037 23 Br 0.017 6.983 24 N -0.435 5.435 25 C 0.107 3.893 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.015 0.985 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.349 0.651 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.179 0.821 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 1.521 22.581 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.553 4.553 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.035 4.035 16 H 0.075 0.925 17 C -0.167 4.167 18 C -0.071 4.071 19 C -0.034 4.034 20 N -0.204 5.204 21 C -0.133 4.133 22 C -0.231 4.231 23 Br 0.100 6.900 24 N -0.119 5.119 25 C -0.016 4.016 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.170 0.830 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.196 0.804 40 H 0.113 0.887 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.908 1.750 22.631 23.032 hybrid contribution -0.532 -0.105 -1.585 1.675 sum 3.376 1.644 21.046 21.378 Atomic orbital electron populations 1.21746 0.96525 1.00526 1.00387 1.21233 0.94982 1.00126 0.93945 0.91498 1.19106 0.96121 0.95384 0.90320 1.21213 1.34808 1.08318 0.90943 0.92539 1.25022 0.95289 0.95065 0.99141 1.69964 1.38978 1.21172 1.23465 0.86624 0.78937 0.79817 0.82811 1.20693 1.21298 1.19896 1.22277 1.00427 0.94633 0.89354 1.60412 1.20307 1.50281 1.00456 1.21657 0.92577 0.97621 0.91609 0.92518 1.21923 1.00406 1.00893 0.93456 1.20247 0.84996 1.02134 0.99769 1.23407 0.94587 1.00675 0.84762 1.70200 1.03411 1.21700 1.25060 1.22353 0.94219 1.03358 0.93337 1.22842 0.85383 1.16884 0.97975 1.96784 1.20676 1.93774 1.78776 1.45324 1.04805 1.47706 1.14036 1.22154 0.97627 1.01582 0.80198 0.94965 0.91703 0.93945 0.96695 0.96733 0.93043 0.91460 0.95309 0.82961 0.90105 0.89526 0.88813 0.88011 0.80380 0.88745 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.77 37.16 0.33 -1.97 16 2 C -0.08 -1.58 2.55 -90.61 -0.23 -1.81 16 3 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.06 0.94 4.94 -3.82 -0.02 0.92 16 14 N -0.68 -8.19 6.31 -106.50 -0.67 -8.86 16 15 C 0.08 0.78 2.51 -67.50 -0.17 0.61 16 16 H 0.06 0.63 7.77 -51.93 -0.40 0.23 16 17 C -0.13 -1.01 5.33 -26.45 -0.14 -1.15 16 18 C -0.03 -0.26 6.33 -27.51 -0.17 -0.43 16 19 C 0.23 2.65 7.65 -155.17 -1.19 1.46 16 20 N -0.48 -6.28 11.24 -10.57 -0.12 -6.40 16 21 C 0.02 0.23 11.85 -17.63 -0.21 0.02 16 22 C -0.04 -0.44 7.41 -16.72 -0.12 -0.57 16 23 Br 0.02 0.18 33.91 -68.01 -2.31 -2.13 16 24 N -0.44 -5.10 3.14 -111.82 -0.35 -5.45 16 25 C 0.11 1.19 6.24 -3.92 -0.02 1.16 16 26 H 0.03 0.44 6.68 -51.93 -0.35 0.09 16 27 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 33 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.35 3.84 6.47 -39.29 -0.25 3.58 16 35 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.09 0.55 7.92 -51.93 -0.41 0.14 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.09 1.13 7.74 -51.93 -0.40 0.73 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 348.42 15.07 5.25 5.25 Total: -1.00 -30.29 348.42 -11.25 -41.53 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.30 Total: -0.50 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.46 Total: -13.98 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.41 Total: -46.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.31 Total: -2.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.29 -11.25 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898723263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.600 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds