Wall clock time and date at job start Sat Apr 11 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47519 * 2 1 4 4 C 1.53008 * 109.47150 * 239.99988 * 2 1 3 5 5 C 1.50699 * 109.46652 * 64.99957 * 4 2 1 6 6 H 1.08000 * 120.00714 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99983 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99808 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00391 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47230 * 90.00163 * 9 7 5 11 11 H 1.48506 * 109.47484 * 210.00134 * 9 7 5 12 12 H 1.48495 * 109.47120 * 330.00032 * 9 7 5 13 13 C 1.53002 * 109.47265 * 120.00469 * 2 1 3 14 14 N 1.46901 * 109.46638 * 294.99799 * 13 2 1 15 15 C 1.46897 * 110.99952 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.46480 * 325.01528 * 15 14 13 17 17 C 1.53147 * 109.46959 * 205.03066 * 15 14 13 18 18 C 1.53392 * 109.25175 * 170.48517 * 17 15 14 19 19 C 1.51044 * 108.21207 * 48.81620 * 18 17 15 20 20 N 1.30076 * 127.39411 * 164.01331 * 19 18 17 21 21 C 1.34316 * 109.22146 * 180.11340 * 20 19 18 22 22 C 1.34955 * 108.07000 * 359.97438 * 21 20 19 23 23 Br 1.89098 * 126.65987 * 180.02562 * 22 21 20 24 24 N 1.35505 * 123.96763 * 344.07936 * 19 18 17 25 25 C 1.46470 * 124.82020 * 359.84044 * 24 19 18 26 26 H 1.08996 * 109.47065 * 299.99930 * 1 2 3 27 27 H 1.08999 * 109.46756 * 59.99625 * 1 2 3 28 28 H 1.08995 * 109.46898 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46878 * 185.00121 * 4 2 1 30 30 H 1.08997 * 109.47254 * 305.00685 * 4 2 1 31 31 H 0.97003 * 119.99945 * 179.97438 * 8 7 5 32 32 H 1.08992 * 109.47256 * 175.00054 * 13 2 1 33 33 H 1.08994 * 109.47096 * 54.99642 * 13 2 1 34 34 H 1.00900 * 110.99974 * 56.04669 * 14 13 2 35 35 H 1.09004 * 109.50332 * 290.40932 * 17 15 14 36 36 H 1.08997 * 109.50781 * 50.54513 * 17 15 14 37 37 H 1.09004 * 109.70009 * 289.14220 * 18 17 15 38 38 H 1.08999 * 109.76202 * 168.52787 * 18 17 15 39 39 H 1.08000 * 125.96331 * 179.97438 * 21 20 19 40 40 H 1.09005 * 109.58858 * 223.10207 * 25 24 19 41 41 H 1.08994 * 109.70107 * 102.74937 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4997 0.5635 -5.2496 10 1 2.5652 1.5430 -5.5816 11 1 1.3130 -0.3701 -6.3892 12 1 0.2284 1.2848 -4.9873 13 6 2.0401 -0.7214 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 2.0810 -1.7081 3.5329 17 6 1.2346 -0.2229 4.8459 18 6 1.5781 -1.0937 6.0611 19 6 3.0783 -1.0894 6.2360 20 7 3.7521 -1.4538 7.2873 21 6 5.0645 -1.2991 7.0469 22 6 5.2068 -0.8194 5.7936 23 35 6.8328 -0.4109 4.9189 24 7 3.9508 -0.6873 5.2804 25 6 3.5710 -0.2060 3.9502 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1264 -0.7995 -1.2056 30 1 1.6054 -1.7198 -1.2953 31 1 2.9237 -1.8416 -4.7319 32 1 3.1263 -0.7996 1.2055 33 1 1.6055 -1.7198 1.2951 34 1 0.6529 0.1792 2.4752 35 1 1.4069 0.8256 5.0892 36 1 0.1880 -0.3680 4.5782 37 1 1.2304 -2.1130 5.8928 38 1 1.1026 -0.6857 6.9530 39 1 5.8659 -1.5202 7.7363 40 1 4.2319 -0.6424 3.2012 41 1 3.6481 0.8807 3.9167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898723263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:09 Heat of formation + Delta-G solvation = 25.516006 kcal Electronic energy + Delta-G solvation = -21467.909235 eV Core-core repulsion = 18235.242812 eV Total energy + Delta-G solvation = -3232.666423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.080 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.49342 -39.29017 -37.22980 -34.95760 -34.58360 -33.41340 -32.42388 -29.79367 -28.99107 -28.49448 -26.95255 -25.18882 -23.89353 -22.92425 -22.27242 -20.77769 -19.97612 -18.55783 -18.19878 -17.25705 -16.60831 -16.49894 -15.95446 -15.78015 -15.40914 -15.14298 -14.91099 -14.72499 -14.49672 -14.29068 -13.81626 -13.74403 -13.30489 -13.05059 -12.86934 -12.73595 -12.61609 -12.28815 -12.24716 -12.09640 -11.94142 -11.85386 -11.79919 -11.49772 -11.09290 -11.04797 -10.92683 -10.72136 -10.53428 -9.53180 -9.40085 -8.17723 -6.26531 0.18015 0.67174 1.40599 1.40968 1.51766 1.64277 1.87162 2.41765 2.97874 3.16272 3.20155 3.42778 3.61203 3.88532 4.03248 4.16123 4.21373 4.25572 4.34373 4.36854 4.38196 4.46918 4.59208 4.76841 4.82604 4.86793 4.93521 5.03831 5.05237 5.13237 5.25557 5.38442 5.40531 5.51833 5.55439 5.78214 5.86532 5.90766 6.00222 6.30354 6.42725 6.80954 6.90202 7.42042 8.94213 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.002708 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.382309 B =10338.311531 C =11866.410827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.059 0.941 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.076 3.924 14 N -0.675 5.675 15 C 0.080 3.920 16 H 0.052 0.948 17 C -0.118 4.118 18 C -0.029 4.029 19 C 0.225 3.775 20 N -0.511 5.511 21 C 0.013 3.987 22 C -0.053 4.053 23 Br 0.023 6.977 24 N -0.441 5.441 25 C 0.109 3.891 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.041 0.959 29 H -0.016 1.016 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.360 0.640 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.196 0.804 40 H 0.080 0.920 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 2.594 23.559 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.185 1.185 13 C -0.053 4.053 14 N -0.309 5.309 15 C -0.030 4.030 16 H 0.070 0.930 17 C -0.156 4.156 18 C -0.068 4.068 19 C -0.038 4.038 20 N -0.230 5.230 21 C -0.139 4.139 22 C -0.247 4.247 23 Br 0.106 6.894 24 N -0.124 5.124 25 C -0.013 4.013 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.003 0.997 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.183 0.817 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.213 0.787 40 H 0.098 0.902 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.231 2.838 23.627 23.902 hybrid contribution 0.039 -0.461 -1.842 1.899 sum 2.271 2.377 21.786 22.032 Atomic orbital electron populations 1.21660 0.94666 1.00784 1.01360 1.21012 0.96442 0.99041 0.92908 0.92246 1.19010 0.94113 0.94612 0.92840 1.21654 1.34289 1.08547 0.92027 0.91945 1.25940 0.95344 0.96058 1.02658 1.70102 1.40411 1.22965 1.24221 0.85538 0.79061 0.78376 0.78647 1.20099 1.21109 1.18547 1.21922 0.99525 0.94438 0.89429 1.60253 1.21121 1.49716 0.99843 1.21650 0.92522 0.97166 0.91698 0.92983 1.21884 1.01026 1.00811 0.91926 1.20430 0.82765 1.03051 1.00603 1.24129 0.95976 0.99495 0.84237 1.70213 1.03988 1.22829 1.25967 1.22725 0.94535 1.02973 0.93703 1.23047 0.85860 1.17422 0.98321 1.96776 1.20235 1.93745 1.78657 1.45403 1.04907 1.47937 1.14167 1.22102 0.98060 1.01376 0.79800 0.90859 0.93813 0.94027 0.99738 0.99225 0.93024 0.92741 0.95349 0.81732 0.89922 0.87055 0.87656 0.86194 0.78692 0.90159 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 8.77 71.98 0.63 -3.49 16 2 C -0.08 -2.80 2.55 -10.79 -0.03 -2.83 16 3 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.03 1.61 4.45 29.85 0.13 1.74 16 5 C -0.53 -28.98 8.41 25.60 0.22 -28.76 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -56.62 13.29 21.45 0.28 -56.33 16 9 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 13 C 0.08 2.28 4.94 86.30 0.43 2.71 16 14 N -0.67 -14.73 6.31 -490.87 -3.10 -17.83 16 15 C 0.08 1.49 2.51 45.05 0.11 1.60 16 16 H 0.05 1.05 7.77 -2.39 -0.02 1.04 16 17 C -0.12 -1.46 5.33 30.77 0.16 -1.30 16 18 C -0.03 -0.39 6.33 30.09 0.19 -0.20 16 19 C 0.23 4.85 7.65 138.21 1.06 5.91 16 20 N -0.51 -12.68 11.24 -187.37 -2.11 -14.78 16 21 C 0.01 0.29 11.85 83.56 0.99 1.28 16 22 C -0.05 -1.24 7.41 83.24 0.62 -0.63 16 23 Br 0.02 0.49 33.91 -20.37 -0.69 -0.21 16 24 N -0.44 -9.93 3.14 -507.69 -1.59 -11.52 16 25 C 0.11 2.33 6.24 86.47 0.54 2.87 16 26 H 0.07 1.76 6.68 -2.39 -0.02 1.75 16 27 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.05 1.77 7.66 -2.39 -0.02 1.76 16 33 H 0.03 0.86 8.05 -2.39 -0.02 0.84 16 34 H 0.36 6.60 6.47 -89.69 -0.58 6.02 16 35 H 0.08 1.05 8.12 -2.38 -0.02 1.03 16 36 H 0.11 0.90 7.92 -2.39 -0.02 0.88 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.08 1.93 7.74 -2.38 -0.02 1.91 16 41 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.49 348.42 0.78 -65.71 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.44 Total: 9.97 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.51 Total: -20.80 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -6.51 Total: -100.47 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 35 Polarization: 0.49 SS G_CDS: -0.69 Total: -0.21 kcal Total: -66.49 0.78 -65.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898723263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.224 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds