Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47103 * 119.99838 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00282 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.52998 * 109.47270 * 240.00009 * 2 1 3 14 14 N 1.46907 * 109.46923 * 64.99762 * 13 2 1 15 15 C 1.46898 * 110.99723 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.47083 * 35.01190 * 15 14 13 17 17 C 1.53150 * 109.46783 * 155.00174 * 15 14 13 18 18 C 1.53394 * 109.24857 * 189.51748 * 17 15 14 19 19 C 1.51046 * 108.20492 * 311.16182 * 18 17 15 20 20 N 1.30069 * 127.39263 * 195.95876 * 19 18 17 21 21 C 1.34319 * 109.22575 * 179.97438 * 20 19 18 22 22 C 1.34960 * 108.06592 * 0.02562 * 21 20 19 23 23 Br 1.89095 * 126.66353 * 180.02562 * 22 21 20 24 24 N 1.35504 * 123.97194 * 15.97043 * 19 18 17 25 25 C 1.46472 * 124.81781 * 0.10265 * 24 19 18 26 26 H 1.08997 * 109.47437 * 299.99759 * 1 2 3 27 27 H 1.08995 * 109.47676 * 60.00319 * 1 2 3 28 28 H 1.09007 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46922 * 174.99984 * 4 2 1 30 30 H 1.09003 * 109.46836 * 55.00740 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47161 * 184.99769 * 13 2 1 33 33 H 1.09000 * 109.47109 * 304.99855 * 13 2 1 34 34 H 1.00894 * 110.99647 * 56.04839 * 14 13 2 35 35 H 1.09004 * 109.50291 * 309.44809 * 17 15 14 36 36 H 1.09001 * 109.50609 * 69.57865 * 17 15 14 37 37 H 1.08994 * 109.71910 * 70.84918 * 18 17 15 38 38 H 1.09006 * 109.71498 * 191.49070 * 18 17 15 39 39 H 1.08001 * 125.96727 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.58436 * 257.34851 * 25 24 19 41 41 H 1.08995 * 109.58977 * 136.93016 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9741 2.3758 7 6 1.9932 -0.4017 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4996 0.5634 5.2496 10 1 1.9945 -0.1367 6.4621 11 1 2.0917 1.9237 5.1865 12 1 0.0196 0.6700 5.3095 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.1258 -0.6264 -3.6671 16 1 2.0823 -1.7073 -3.5334 17 6 1.2362 -0.2219 -4.8464 18 6 1.5808 -1.0922 -6.0616 19 6 3.0812 -1.0868 -6.2356 20 7 3.7558 -1.4509 -7.2864 21 6 5.0681 -1.2971 -7.0447 22 6 5.2094 -0.8182 -5.7909 23 35 6.8346 -0.4098 -4.9147 24 7 3.9530 -0.6853 -5.2791 25 6 3.5721 -0.2046 -3.9490 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1264 -0.7994 1.2056 30 1 1.6054 -1.7198 1.2951 31 1 2.9243 -1.8413 4.7317 32 1 3.1264 -0.7994 -1.2056 33 1 1.6054 -1.7198 -1.2951 34 1 1.9881 0.9873 -2.3966 35 1 0.1895 -0.3676 -4.5794 36 1 1.4082 0.8268 -5.0890 37 1 1.2336 -2.1117 -5.8942 38 1 1.1058 -0.6831 -6.9534 39 1 5.8701 -1.5182 -7.7334 40 1 3.6483 0.8823 -3.9176 41 1 4.2325 -0.6410 -3.1997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898723265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = 42.379556 kcal Electronic energy + Delta-G solvation = -21470.653120 eV Core-core repulsion = 18238.717955 eV Total energy + Delta-G solvation = -3231.935164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.67008 -38.30064 -35.83993 -33.78831 -33.35192 -31.90485 -31.60121 -28.65726 -28.05537 -26.78246 -25.39003 -24.07423 -22.52694 -22.04582 -21.42057 -19.78754 -18.88306 -17.27041 -16.48611 -16.30949 -15.49207 -15.06780 -14.77064 -14.52149 -14.38435 -14.22695 -14.05704 -13.68444 -13.35687 -12.88628 -12.35889 -12.22924 -11.95484 -11.73610 -11.52721 -11.48113 -11.35512 -11.11597 -11.02980 -10.89645 -10.85571 -10.36279 -10.35657 -10.22016 -9.90610 -9.80597 -9.24980 -9.04677 -8.57621 -8.48523 -8.38155 -6.03022 -4.04680 0.99515 1.50326 2.46853 2.72959 3.30534 3.35433 3.37437 3.90010 4.01751 4.09001 4.36456 4.43483 4.65581 4.77029 4.96394 5.06444 5.08689 5.13752 5.30734 5.32943 5.50494 5.52684 5.64768 5.77627 5.82294 5.86956 6.00771 6.20596 6.26813 6.39844 6.55170 6.69730 6.85739 7.02537 7.06849 7.15822 7.34298 7.61224 7.66293 7.76119 7.96143 8.39452 9.01342 9.59106 11.08400 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.002708 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.411365 B =10336.850393 C =11854.455526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.059 3.941 14 N -0.668 5.668 15 C 0.078 3.922 16 H 0.091 0.909 17 C -0.115 4.115 18 C -0.035 4.035 19 C 0.234 3.766 20 N -0.485 5.485 21 C 0.021 3.979 22 C -0.042 4.042 23 Br 0.016 6.984 24 N -0.435 5.435 25 C 0.067 3.933 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.342 0.658 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.179 0.821 40 H 0.090 0.910 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 2.227 -22.503 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.202 1.202 13 C -0.069 4.069 14 N -0.298 5.298 15 C -0.033 4.033 16 H 0.109 0.891 17 C -0.153 4.153 18 C -0.074 4.074 19 C -0.030 4.030 20 N -0.204 5.204 21 C -0.131 4.131 22 C -0.235 4.235 23 Br 0.098 6.902 24 N -0.118 5.118 25 C -0.057 4.057 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.196 0.804 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.050 1.748 -22.606 23.033 hybrid contribution 1.133 0.875 1.671 2.200 sum 5.182 2.623 -20.936 21.726 Atomic orbital electron populations 1.21595 0.95517 1.00689 1.00269 1.21212 0.96167 0.98916 0.93842 0.92722 1.19111 0.95871 0.95598 0.90370 1.21177 1.34853 1.08369 0.90959 0.92594 1.25021 0.95266 0.95074 0.99126 1.69951 1.38885 1.21184 1.23579 0.86685 0.78939 0.80089 0.82459 1.21343 1.20300 1.20224 1.22310 0.97412 0.97919 0.89267 1.60764 1.62392 1.05875 1.00756 1.21926 0.88745 1.00528 0.92150 0.89123 1.21733 1.01721 0.99664 0.92220 1.20321 0.84551 1.02482 1.00065 1.23529 0.94760 1.00184 0.84489 1.70222 1.03343 1.21726 1.25086 1.22361 0.94279 1.03177 0.93268 1.22871 0.85421 1.17141 0.98061 1.96780 1.20932 1.93769 1.78683 1.45283 1.04762 1.48007 1.13771 1.23145 1.00186 1.00945 0.81424 0.92653 0.93903 0.94076 0.96980 0.96528 0.92980 0.95515 0.91081 0.83975 0.88482 0.91226 0.88654 0.88078 0.80397 0.89229 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.89 37.16 0.33 -1.88 16 2 C -0.08 -1.54 2.48 -90.62 -0.22 -1.77 16 3 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 5 C -0.52 -14.01 8.41 -34.44 -0.29 -14.30 16 6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.06 0.89 4.87 -3.82 -0.02 0.87 16 14 N -0.67 -7.74 5.71 -106.49 -0.61 -8.34 16 15 C 0.08 0.76 2.48 -67.50 -0.17 0.60 16 16 H 0.09 0.98 7.77 -51.93 -0.40 0.57 16 17 C -0.11 -0.93 5.57 -26.45 -0.15 -1.07 16 18 C -0.03 -0.28 6.33 -27.51 -0.17 -0.46 16 19 C 0.23 2.65 7.65 -155.18 -1.19 1.47 16 20 N -0.49 -6.22 11.24 -10.57 -0.12 -6.34 16 21 C 0.02 0.25 11.85 -17.63 -0.21 0.04 16 22 C -0.04 -0.48 7.41 -16.72 -0.12 -0.61 16 23 Br 0.02 0.16 33.91 -68.01 -2.31 -2.15 16 24 N -0.43 -4.90 3.14 -111.82 -0.35 -5.25 16 25 C 0.07 0.68 6.08 -3.92 -0.02 0.65 16 26 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 27 H 0.04 0.67 7.75 -51.93 -0.40 0.26 16 28 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.03 0.41 7.65 -51.93 -0.40 0.01 16 33 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.34 3.69 8.35 -39.29 -0.33 3.37 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.18 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.09 0.84 7.95 -51.93 -0.41 0.42 16 41 H 0.09 1.03 7.74 -51.93 -0.40 0.63 16 LS Contribution 350.83 15.07 5.29 5.29 Total: -1.00 -30.28 350.83 -11.27 -41.55 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.43 Total: -0.86 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.46 Total: -14.42 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.34 Total: -45.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 35 Polarization: 0.16 SS G_CDS: -2.31 Total: -2.15 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.28 -11.27 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898723265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.934 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds