Wall clock time and date at job start Sat Apr 11 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47103 * 119.99838 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00282 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.52998 * 109.47270 * 240.00009 * 2 1 3 14 14 N 1.46907 * 109.46923 * 64.99762 * 13 2 1 15 15 C 1.46898 * 110.99723 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.47083 * 35.01190 * 15 14 13 17 17 C 1.53150 * 109.46783 * 155.00174 * 15 14 13 18 18 C 1.53394 * 109.24857 * 189.51748 * 17 15 14 19 19 C 1.51046 * 108.20492 * 311.16182 * 18 17 15 20 20 N 1.30069 * 127.39263 * 195.95876 * 19 18 17 21 21 C 1.34319 * 109.22575 * 179.97438 * 20 19 18 22 22 C 1.34960 * 108.06592 * 0.02562 * 21 20 19 23 23 Br 1.89095 * 126.66353 * 180.02562 * 22 21 20 24 24 N 1.35504 * 123.97194 * 15.97043 * 19 18 17 25 25 C 1.46472 * 124.81781 * 0.10265 * 24 19 18 26 26 H 1.08997 * 109.47437 * 299.99759 * 1 2 3 27 27 H 1.08995 * 109.47676 * 60.00319 * 1 2 3 28 28 H 1.09007 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46922 * 174.99984 * 4 2 1 30 30 H 1.09003 * 109.46836 * 55.00740 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47161 * 184.99769 * 13 2 1 33 33 H 1.09000 * 109.47109 * 304.99855 * 13 2 1 34 34 H 1.00894 * 110.99647 * 56.04839 * 14 13 2 35 35 H 1.09004 * 109.50291 * 309.44809 * 17 15 14 36 36 H 1.09001 * 109.50609 * 69.57865 * 17 15 14 37 37 H 1.08994 * 109.71910 * 70.84918 * 18 17 15 38 38 H 1.09006 * 109.71498 * 191.49070 * 18 17 15 39 39 H 1.08001 * 125.96727 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.58436 * 257.34851 * 25 24 19 41 41 H 1.08995 * 109.58977 * 136.93016 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9741 2.3758 7 6 1.9932 -0.4017 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4996 0.5634 5.2496 10 1 1.9945 -0.1367 6.4621 11 1 2.0917 1.9237 5.1865 12 1 0.0196 0.6700 5.3095 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0375 -2.4456 15 6 2.1258 -0.6264 -3.6671 16 1 2.0823 -1.7073 -3.5334 17 6 1.2362 -0.2219 -4.8464 18 6 1.5808 -1.0922 -6.0616 19 6 3.0812 -1.0868 -6.2356 20 7 3.7558 -1.4509 -7.2864 21 6 5.0681 -1.2971 -7.0447 22 6 5.2094 -0.8182 -5.7909 23 35 6.8346 -0.4098 -4.9147 24 7 3.9530 -0.6853 -5.2791 25 6 3.5721 -0.2046 -3.9490 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1264 -0.7994 1.2056 30 1 1.6054 -1.7198 1.2951 31 1 2.9243 -1.8413 4.7317 32 1 3.1264 -0.7994 -1.2056 33 1 1.6054 -1.7198 -1.2951 34 1 1.9881 0.9873 -2.3966 35 1 0.1895 -0.3676 -4.5794 36 1 1.4082 0.8268 -5.0890 37 1 1.2336 -2.1117 -5.8942 38 1 1.1058 -0.6831 -6.9534 39 1 5.8701 -1.5182 -7.7334 40 1 3.6483 0.8823 -3.9176 41 1 4.2325 -0.6410 -3.1997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898723265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:13 Heat of formation + Delta-G solvation = 25.149844 kcal Electronic energy + Delta-G solvation = -21471.400256 eV Core-core repulsion = 18238.717955 eV Total energy + Delta-G solvation = -3232.682301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.080 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.50656 -39.28270 -37.20105 -34.92848 -34.58010 -33.45500 -32.45612 -29.76680 -28.96369 -28.47139 -26.66996 -25.17146 -24.03793 -22.90654 -22.29751 -21.02346 -20.01148 -18.48563 -18.10844 -17.24513 -16.60689 -16.40483 -15.93789 -15.81662 -15.38838 -15.08032 -14.99228 -14.74928 -14.42437 -14.32495 -14.02724 -13.36945 -13.13394 -13.03437 -12.81257 -12.68946 -12.60229 -12.37855 -12.19843 -12.17223 -11.98501 -11.84523 -11.79763 -11.49878 -11.09320 -11.08752 -10.90429 -10.75004 -10.52793 -9.52656 -9.40124 -8.17641 -6.26475 0.15518 0.65553 1.40509 1.42558 1.50179 1.64304 1.86809 2.41800 3.00359 3.16271 3.24644 3.29276 3.59233 3.84422 3.97099 4.11395 4.22386 4.30100 4.33702 4.37119 4.40569 4.53721 4.58751 4.85088 4.89493 4.91536 5.02889 5.03214 5.13788 5.21366 5.30593 5.37925 5.48761 5.54624 5.56224 5.80823 5.85347 5.89842 5.97700 6.30553 6.37076 6.80841 6.90160 7.42057 8.94074 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.002708 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.411365 B =10336.850393 C =11854.455526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 H 0.057 0.943 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.958 3.042 10 H -0.287 1.287 11 H -0.267 1.267 12 H -0.267 1.267 13 C 0.074 3.926 14 N -0.659 5.659 15 C 0.083 3.917 16 H 0.082 0.918 17 C -0.104 4.104 18 C -0.031 4.031 19 C 0.230 3.770 20 N -0.512 5.512 21 C 0.012 3.988 22 C -0.056 4.056 23 Br 0.023 6.977 24 N -0.439 5.439 25 C 0.070 3.930 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.034 0.966 29 H -0.015 1.015 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.350 0.650 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.195 0.805 40 H 0.100 0.900 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 3.562 -23.350 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.213 1.213 11 H -0.192 1.192 12 H -0.192 1.192 13 C -0.055 4.055 14 N -0.289 5.289 15 C -0.028 4.028 16 H 0.101 0.899 17 C -0.142 4.142 18 C -0.070 4.070 19 C -0.034 4.034 20 N -0.231 5.231 21 C -0.139 4.139 22 C -0.249 4.249 23 Br 0.106 6.894 24 N -0.123 5.123 25 C -0.054 4.054 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.003 0.997 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.169 0.831 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.212 0.788 40 H 0.118 0.882 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.929 3.102 -23.472 23.856 hybrid contribution 1.522 0.433 1.890 2.464 sum 4.450 3.535 -21.582 22.318 Atomic orbital electron populations 1.21500 0.94494 1.00430 1.00718 1.21009 0.96854 0.98511 0.92907 0.92449 1.19014 0.94034 0.94686 0.92848 1.21631 1.34333 1.08633 0.92069 0.91965 1.25936 0.95315 0.96061 1.02636 1.70092 1.40332 1.22970 1.24287 0.85602 0.78972 0.78819 0.78294 1.21257 1.19224 1.19204 1.21957 0.96790 0.97501 0.89263 1.60677 1.62272 1.06008 0.99959 1.21907 0.89017 0.99925 0.91921 0.89935 1.21657 1.01622 0.99928 0.91027 1.20467 0.82588 1.03222 1.00752 1.24152 0.95972 0.99213 0.84083 1.70223 1.03972 1.22844 1.26069 1.22724 0.94539 1.02950 0.93734 1.23064 0.85937 1.17526 0.98349 1.96776 1.20426 1.93719 1.78502 1.45376 1.04763 1.48114 1.14015 1.23128 1.00060 1.01440 0.80799 0.94619 0.90874 0.94685 0.99680 0.99276 0.93014 0.96117 0.91654 0.83053 0.87455 0.90580 0.87734 0.86427 0.78801 0.88180 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.94 8.89 71.98 0.64 -3.30 16 2 C -0.07 -2.73 2.48 -10.79 -0.03 -2.76 16 3 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.03 1.60 4.45 29.85 0.13 1.73 16 5 C -0.53 -28.99 8.41 25.60 0.22 -28.78 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 8 N -0.94 -56.51 13.29 21.45 0.28 -56.23 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.07 2.16 4.87 86.30 0.42 2.58 16 14 N -0.66 -13.80 5.71 -490.83 -2.80 -16.60 16 15 C 0.08 1.47 2.48 45.06 0.11 1.58 16 16 H 0.08 1.64 7.77 -2.39 -0.02 1.62 16 17 C -0.10 -1.37 5.57 30.78 0.17 -1.20 16 18 C -0.03 -0.43 6.33 30.09 0.19 -0.24 16 19 C 0.23 4.85 7.65 138.22 1.06 5.90 16 20 N -0.51 -12.59 11.24 -187.36 -2.11 -14.70 16 21 C 0.01 0.28 11.85 83.56 0.99 1.27 16 22 C -0.06 -1.25 7.41 83.24 0.62 -0.63 16 23 Br 0.02 0.46 33.91 -20.37 -0.69 -0.23 16 24 N -0.44 -9.37 3.14 -507.69 -1.59 -10.97 16 25 C 0.07 1.31 6.08 86.48 0.53 1.84 16 26 H 0.03 1.35 6.95 -2.39 -0.02 1.33 16 27 H 0.07 2.08 7.75 -2.39 -0.02 2.06 16 28 H 0.03 1.22 8.14 -2.38 -0.02 1.21 16 29 H -0.02 -0.83 8.14 -2.38 -0.02 -0.85 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.02 0.63 7.65 -2.38 -0.02 0.61 16 33 H 0.06 2.00 8.06 -2.39 -0.02 1.98 16 34 H 0.35 6.63 8.35 -89.70 -0.75 5.88 16 35 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.20 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.10 1.68 7.95 -2.39 -0.02 1.66 16 41 H 0.08 1.76 7.74 -2.39 -0.02 1.75 16 Total: -1.00 -65.57 350.83 0.90 -64.67 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.27 Total: 10.01 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 5.51 Total: -21.66 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -6.21 Total: -98.49 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 35 Polarization: 0.46 SS G_CDS: -0.69 Total: -0.23 kcal Total: -65.57 0.90 -64.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898723265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.820 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds