Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47406 * 2 1 4 4 C 1.53008 * 109.47180 * 120.00178 * 2 1 3 5 5 C 1.50694 * 109.46650 * 294.99819 * 4 2 1 6 6 H 1.08003 * 120.00498 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99879 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99776 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00416 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47086 * 89.99690 * 9 7 5 11 11 H 1.48495 * 109.47382 * 210.00139 * 9 7 5 12 12 H 1.48503 * 109.47045 * 330.00007 * 9 7 5 13 13 C 1.53008 * 109.47083 * 239.99726 * 2 1 3 14 14 N 1.46902 * 109.46622 * 65.00316 * 13 2 1 15 15 C 1.46906 * 110.99573 * 179.97438 * 14 13 2 16 16 H 1.08996 * 109.46372 * 325.01497 * 15 14 13 17 17 C 1.53149 * 109.46405 * 205.03797 * 15 14 13 18 18 C 1.53397 * 109.23756 * 170.47745 * 17 15 14 19 19 C 1.51047 * 108.20041 * 48.87144 * 18 17 15 20 20 N 1.30072 * 127.39577 * 163.95471 * 19 18 17 21 21 C 1.34321 * 109.22118 * 180.02562 * 20 19 18 22 22 C 1.34952 * 108.07198 * 359.97438 * 21 20 19 23 23 Br 1.89095 * 126.66526 * 180.02562 * 22 21 20 24 24 N 1.35513 * 123.96468 * 343.99225 * 19 18 17 25 25 C 1.46464 * 124.82238 * 359.89633 * 24 19 18 26 26 H 1.09001 * 109.47025 * 300.00311 * 1 2 3 27 27 H 1.09007 * 109.47182 * 59.99862 * 1 2 3 28 28 H 1.08994 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46614 * 54.99566 * 4 2 1 30 30 H 1.08993 * 109.46898 * 174.99917 * 4 2 1 31 31 H 0.97000 * 119.99810 * 180.02562 * 8 7 5 32 32 H 1.08990 * 109.46924 * 305.00455 * 13 2 1 33 33 H 1.09004 * 109.46978 * 185.00332 * 13 2 1 34 34 H 1.00896 * 111.00219 * 303.95583 * 14 13 2 35 35 H 1.09000 * 109.50848 * 290.41876 * 17 15 14 36 36 H 1.09004 * 109.50778 * 50.55609 * 17 15 14 37 37 H 1.09002 * 109.73435 * 289.18644 * 18 17 15 38 38 H 1.09003 * 109.74085 * 168.55969 * 18 17 15 39 39 H 1.08001 * 125.95963 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.58812 * 223.10456 * 25 24 19 41 41 H 1.09007 * 109.70141 * 102.75650 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0806 0.9746 2.3756 7 6 1.9923 -0.4022 3.7283 8 7 2.6755 -1.5193 3.8511 9 14 1.4988 0.5628 5.2496 10 1 0.1711 0.0956 5.7231 11 1 2.5078 0.3520 6.3185 12 1 1.4251 2.0082 4.9166 13 6 2.0399 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6672 16 1 3.0893 -1.0978 -3.4736 17 6 2.2797 0.4096 -4.7843 18 6 2.9958 -0.2361 -5.9774 19 6 2.3153 -1.5499 -6.2813 20 7 2.4166 -2.2595 -7.3667 21 6 1.6559 -3.3601 -7.2481 22 6 1.0601 -3.3288 -6.0376 23 35 -0.1229 -4.6218 -5.3276 24 7 1.4765 -2.1837 -5.4263 25 6 1.1122 -1.6937 -4.0950 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6052 -1.7199 1.2951 30 1 3.1262 -0.7995 1.2056 31 1 2.9221 -1.8426 4.7318 32 1 1.6053 -1.7198 -1.2951 33 1 3.1263 -0.7996 -1.2056 34 1 0.6528 0.1794 -2.4753 35 1 1.2951 0.7583 -5.0957 36 1 2.8669 1.2528 -4.4203 37 1 4.0418 -0.4130 -5.7271 38 1 2.9313 0.4207 -6.8449 39 1 1.5411 -4.1349 -7.9918 40 1 1.1294 -2.5198 -3.3842 41 1 0.1134 -1.2579 -4.1244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898723267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = 25.367688 kcal Electronic energy + Delta-G solvation = -21500.974424 eV Core-core repulsion = 18268.301570 eV Total energy + Delta-G solvation = -3232.672854 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 341.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50667 -39.34133 -37.22422 -34.94012 -34.58425 -33.42391 -32.45283 -29.77526 -28.95356 -28.51638 -26.79677 -25.22060 -24.02793 -22.89515 -22.28425 -20.84406 -20.13132 -18.51838 -18.09912 -17.25342 -16.69641 -16.60352 -15.97125 -15.53834 -15.48775 -15.09489 -14.98557 -14.66134 -14.49080 -14.23295 -14.03328 -13.58387 -13.29873 -13.03629 -12.81488 -12.71375 -12.58699 -12.36945 -12.22365 -12.16452 -11.95766 -11.84730 -11.79318 -11.51877 -11.09440 -11.06777 -10.92137 -10.74987 -10.53187 -9.55329 -9.40144 -8.17494 -6.26210 0.15361 0.65514 1.40631 1.41265 1.52115 1.64061 1.86830 2.41979 2.99565 3.16553 3.23963 3.28533 3.58362 3.84037 3.96633 4.12081 4.22762 4.28775 4.33196 4.34016 4.39837 4.44568 4.59047 4.75449 4.83692 4.85806 5.02226 5.03361 5.12499 5.18324 5.25610 5.37846 5.39141 5.50603 5.55596 5.77815 5.85873 5.90650 5.98984 6.30597 6.37029 6.80885 6.90528 7.42355 8.94429 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.002619 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.078652 B =10690.516492 C =11865.630808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 H 0.061 0.939 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.262 1.262 13 C 0.074 3.926 14 N -0.664 5.664 15 C 0.082 3.918 16 H 0.082 0.918 17 C -0.105 4.105 18 C -0.031 4.031 19 C 0.229 3.771 20 N -0.512 5.512 21 C 0.012 3.988 22 C -0.055 4.055 23 Br 0.024 6.976 24 N -0.439 5.439 25 C 0.070 3.930 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.039 0.961 29 H -0.012 1.012 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.350 0.650 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.195 0.805 40 H 0.084 0.916 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 -1.637 -23.790 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.187 1.187 13 C -0.055 4.055 14 N -0.295 5.295 15 C -0.029 4.029 16 H 0.100 0.900 17 C -0.143 4.143 18 C -0.070 4.070 19 C -0.034 4.034 20 N -0.231 5.231 21 C -0.140 4.140 22 C -0.248 4.248 23 Br 0.107 6.893 24 N -0.123 5.123 25 C -0.054 4.054 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.212 0.788 40 H 0.103 0.897 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.645 -1.529 -23.862 24.358 hybrid contribution -0.985 -1.066 1.747 2.271 sum -5.630 -2.594 -22.115 22.967 Atomic orbital electron populations 1.21674 0.94936 1.00671 1.01316 1.21015 0.96197 0.99213 0.92985 0.92033 1.19007 0.94242 0.94530 0.92776 1.21654 1.34288 1.08543 0.92035 0.91964 1.25934 0.95319 0.96086 1.02644 1.70099 1.40369 1.23009 1.24208 0.85543 0.77917 0.79413 0.78780 1.19984 1.21145 1.18655 1.21948 0.99917 0.94334 0.89319 1.60695 1.20739 1.48211 0.99898 1.21914 0.97117 0.92503 0.91381 0.89973 1.21664 1.02518 0.98140 0.92015 1.20459 0.99119 0.87231 1.00220 1.24129 0.94790 0.98529 0.85998 1.70226 1.23453 1.05977 1.23430 1.22727 0.97418 0.98430 0.95392 1.23063 1.09495 0.93719 0.98523 1.96773 1.58185 1.48596 1.85750 1.45369 1.35214 1.16430 1.15240 1.23105 1.01782 0.99885 0.80583 0.93693 0.91121 0.94161 0.99323 0.99509 0.93023 0.95616 0.92039 0.82863 0.90504 0.87628 0.87791 0.86403 0.78780 0.89739 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.77 71.98 0.63 -3.56 16 2 C -0.08 -2.79 2.55 -10.79 -0.03 -2.82 16 3 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.03 1.61 4.45 29.85 0.13 1.74 16 5 C -0.53 -28.89 8.41 25.60 0.22 -28.67 16 6 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -56.45 13.29 21.45 0.28 -56.16 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.07 2.18 4.94 86.31 0.43 2.61 16 14 N -0.66 -14.37 6.25 -490.84 -3.07 -17.44 16 15 C 0.08 1.48 2.48 45.05 0.11 1.59 16 16 H 0.08 1.68 7.77 -2.39 -0.02 1.66 16 17 C -0.10 -1.44 5.57 30.78 0.17 -1.27 16 18 C -0.03 -0.44 6.33 30.09 0.19 -0.25 16 19 C 0.23 4.85 7.65 138.21 1.06 5.91 16 20 N -0.51 -12.56 11.24 -187.36 -2.11 -14.66 16 21 C 0.01 0.27 11.85 83.56 0.99 1.26 16 22 C -0.06 -1.21 7.41 83.24 0.62 -0.60 16 23 Br 0.02 0.47 33.91 -20.37 -0.69 -0.22 16 24 N -0.44 -9.29 3.14 -507.70 -1.59 -10.88 16 25 C 0.07 1.31 6.08 86.47 0.53 1.83 16 26 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 27 H 0.07 1.74 6.68 -2.38 -0.02 1.73 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 31 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.03 0.76 7.66 -2.39 -0.02 0.74 16 33 H 0.06 1.95 8.05 -2.38 -0.02 1.93 16 34 H 0.35 6.72 6.61 -89.70 -0.59 6.12 16 35 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.20 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.08 1.75 7.74 -2.39 -0.02 1.73 16 41 H 0.10 1.65 7.95 -2.38 -0.02 1.63 16 Total: -1.00 -65.61 348.57 0.79 -64.82 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.43 Total: 10.74 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 5.50 Total: -21.90 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -6.48 Total: -99.14 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 35 Polarization: 0.47 SS G_CDS: -0.69 Total: -0.22 kcal Total: -65.61 0.79 -64.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898723267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.186 kcal (2) G-P(sol) polarization free energy of solvation -65.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds