Wall clock time and date at job start Sat Apr 11 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47512 * 2 1 4 4 C 1.52999 * 109.46975 * 119.99376 * 2 1 3 5 5 C 1.53001 * 109.47185 * 184.99886 * 4 2 1 6 6 S 1.81405 * 109.47229 * 180.02562 * 5 4 2 7 7 C 1.81396 * 103.00016 * 180.02562 * 6 5 4 8 8 O 1.42107 * 109.46648 * 296.39114 * 6 5 4 9 9 N 1.46494 * 109.47291 * 239.99511 * 2 1 3 10 10 C 1.34774 * 119.99973 * 85.00316 * 9 2 1 11 11 O 1.21609 * 120.00320 * 359.97438 * 10 9 2 12 12 C 1.47429 * 119.99840 * 180.02562 * 10 9 2 13 13 C 1.39682 * 120.21882 * 359.97438 * 12 10 9 14 14 C 1.37801 * 119.94016 * 179.97438 * 13 12 10 15 15 C 1.38654 * 120.38549 * 0.02562 * 14 13 12 16 16 C 1.37919 * 120.43362 * 359.97438 * 15 14 13 17 17 C 1.39101 * 120.05207 * 359.97438 * 16 15 14 18 18 S 1.76206 * 120.18871 * 180.02562 * 17 16 15 19 19 C 1.76200 * 99.99847 * 6.83369 * 18 17 16 20 20 H 1.07998 * 120.00274 * 5.66026 * 19 18 17 21 21 C 1.38805 * 119.99573 * 185.65392 * 19 18 17 22 22 N 1.31555 * 120.00478 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46989 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47010 * 120.00235 * 23 21 19 26 26 H 1.48497 * 109.47529 * 240.00149 * 23 21 19 27 27 H 1.09000 * 109.46703 * 60.00328 * 1 2 3 28 28 H 1.08995 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46941 * 300.00773 * 1 2 3 30 30 H 1.09000 * 109.47564 * 305.00029 * 4 2 1 31 31 H 1.09000 * 109.47341 * 65.00286 * 4 2 1 32 32 H 1.08992 * 109.47147 * 300.00263 * 5 4 2 33 33 H 1.09005 * 109.47103 * 60.00526 * 5 4 2 34 34 H 1.08995 * 109.47314 * 59.99728 * 7 6 5 35 35 H 1.08995 * 109.47169 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.46922 * 299.99821 * 7 6 5 37 37 H 0.97000 * 120.00176 * 265.00314 * 9 2 1 38 38 H 1.07998 * 120.02576 * 0.04797 * 13 12 10 39 39 H 1.08008 * 119.80460 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.78248 * 180.27544 * 15 14 13 41 41 H 1.08005 * 119.96990 * 180.02562 * 16 15 14 42 42 H 0.96995 * 120.00304 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 16 4.1695 -1.4688 2.7947 7 6 5.9655 -1.2336 2.6970 8 8 3.6694 -0.8183 3.9549 9 7 2.0183 -0.6907 -1.1960 10 6 2.1471 -0.0184 -2.3570 11 8 1.8575 1.1614 -2.4119 12 6 2.6381 -0.7137 -3.5608 13 6 2.9715 -2.0689 -3.5031 14 6 3.4293 -2.7131 -4.6320 15 6 3.5622 -2.0238 -5.8277 16 6 3.2375 -0.6855 -5.9023 17 6 2.7726 -0.0175 -4.7742 18 16 2.3560 1.6922 -4.8657 19 6 2.5190 1.9543 -6.6005 20 1 2.7188 1.1199 -7.2563 21 6 2.3904 3.2334 -7.1241 22 7 2.1474 4.2499 -6.3252 23 14 2.5639 3.5115 -8.9631 24 1 2.8340 2.2158 -9.6364 25 1 1.3060 4.0932 -9.4966 26 1 3.6889 4.4465 -9.2185 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.6053 -0.2616 2.1370 31 1 1.7516 -1.7714 1.2058 32 1 3.9994 -1.0727 0.4262 33 1 3.8532 0.4371 1.3574 34 1 6.1934 -0.1678 2.7066 35 1 6.4419 -1.7151 3.5509 36 1 6.3404 -1.6771 1.7745 37 1 2.2490 -1.6318 -1.1524 38 1 2.8695 -2.6115 -2.5749 39 1 3.6862 -3.7612 -4.5850 40 1 3.9177 -2.5395 -6.7075 41 1 3.3434 -0.1560 -6.8377 42 1 2.0580 5.1438 -6.6911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900891213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:25 Heat of formation + Delta-G solvation = -53.381236 kcal Electronic energy + Delta-G solvation = -24489.520387 eV Core-core repulsion = 20880.364235 eV Total energy + Delta-G solvation = -3609.156152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67461 -37.72258 -36.16153 -35.89561 -32.77142 -32.46787 -30.74807 -30.29435 -29.47922 -29.12863 -25.84476 -24.38409 -23.30849 -22.01323 -20.96100 -20.11765 -18.22443 -17.71358 -17.19096 -16.31376 -15.86772 -15.53473 -15.21184 -15.01923 -14.93044 -14.49262 -14.35530 -14.10548 -13.73947 -13.57665 -13.48261 -13.11443 -13.02159 -12.89739 -12.74114 -12.25610 -12.08395 -11.93468 -11.65242 -11.60089 -11.39657 -11.24820 -11.23334 -10.97123 -10.92407 -10.34535 -10.24909 -9.81273 -9.65504 -9.51545 -8.81876 -8.74608 -8.51415 -8.35558 -8.06933 -6.55614 -6.47996 -4.18675 1.25350 1.51702 1.99705 2.33954 3.09120 3.10371 3.18993 3.39937 3.50472 3.51102 3.52971 4.04750 4.46183 4.56275 4.71961 4.79027 4.83219 4.93142 4.94522 5.11207 5.29097 5.31583 5.36040 5.45050 5.49394 5.57892 5.59293 5.61608 5.78568 5.84393 5.90087 6.08881 6.16441 6.32439 6.36880 6.57681 6.79277 6.84241 7.01505 7.11621 7.43063 7.57183 7.91828 8.14699 8.80196 8.98434 10.55247 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002712 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.733937 B =10322.075589 C =10966.738347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 H 0.087 0.913 4 C -0.105 4.105 5 C -0.446 4.446 6 S 1.237 4.763 7 C -0.489 4.489 8 O -0.856 6.856 9 N -0.732 5.732 10 C 0.552 3.448 11 O -0.509 6.509 12 C -0.178 4.178 13 C -0.061 4.061 14 C -0.187 4.187 15 C -0.077 4.077 16 C -0.153 4.153 17 C -0.057 4.057 18 S 0.184 5.816 19 C -0.595 4.595 20 H 0.091 0.909 21 C 0.083 3.917 22 N -0.858 5.858 23 Si 0.919 3.081 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.393 0.607 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -17.267 12.772 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.583 4.583 6 S 1.436 4.564 7 C -0.647 4.647 8 O -0.851 6.851 9 N -0.387 5.387 10 C 0.341 3.659 11 O -0.386 6.386 12 C -0.193 4.193 13 C -0.082 4.082 14 C -0.212 4.212 15 C -0.100 4.100 16 C -0.179 4.179 17 C -0.177 4.177 18 S 0.448 5.552 19 C -0.742 4.742 20 H 0.109 0.891 21 C -0.128 4.128 22 N -0.490 5.490 23 Si 0.744 3.256 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.228 0.772 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.156 0.844 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.462 -15.417 14.253 21.140 hybrid contribution 1.337 0.990 -2.230 2.782 sum 3.799 -14.427 12.023 19.160 Atomic orbital electron populations 1.22197 0.95351 1.02008 1.02774 1.20817 0.93814 0.97640 0.83368 0.89453 1.21486 0.92184 1.01966 0.98756 1.27684 1.03346 1.10953 1.16343 1.70323 0.85496 1.16062 0.84496 1.27627 1.21301 1.07327 1.08447 1.93132 1.73744 1.77565 1.40686 1.45911 1.69768 1.13606 1.09429 1.18321 0.77980 0.86665 0.82903 1.90787 1.49071 1.15232 1.83518 1.19134 1.12730 0.94283 0.93176 1.20888 0.96856 0.92849 0.97567 1.20631 1.07706 0.99323 0.93499 1.21088 0.97470 0.94257 0.97141 1.21442 1.02562 0.94739 0.99109 1.23095 0.97000 1.03426 0.94196 1.84780 1.69942 0.94138 1.06297 1.24099 1.57123 0.97152 0.95836 0.89099 1.25103 0.93166 0.94748 0.99771 1.69982 1.43167 1.00144 1.35753 0.86101 0.78253 0.78774 0.82423 1.19136 1.20226 1.20243 0.91447 0.92525 0.92050 0.90071 0.90241 0.86167 0.89305 0.90104 0.87754 0.86811 0.77160 0.87064 0.87059 0.87071 0.84437 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.15 1.77 2.57 -67.94 -0.17 1.59 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.10 -0.87 4.76 -26.73 -0.13 -1.00 16 5 C -0.45 -3.45 5.81 37.16 0.22 -3.24 16 6 S 1.24 7.85 13.80 -107.50 -1.48 6.37 16 7 C -0.49 -2.92 10.74 101.05 1.09 -1.83 16 8 O -0.86 -11.59 18.14 -35.23 -0.64 -12.23 16 9 N -0.73 -9.24 4.48 -54.89 -0.25 -9.49 16 10 C 0.55 10.07 7.71 -12.52 -0.10 9.97 16 11 O -0.51 -11.54 13.43 5.27 0.07 -11.47 16 12 C -0.18 -3.32 5.89 -104.75 -0.62 -3.94 16 13 C -0.06 -0.88 9.53 -39.20 -0.37 -1.26 16 14 C -0.19 -2.66 10.02 -39.59 -0.40 -3.06 16 15 C -0.08 -1.26 10.03 -39.54 -0.40 -1.66 16 16 C -0.15 -3.12 9.22 -39.38 -0.36 -3.48 16 17 C -0.06 -1.27 6.15 -38.39 -0.24 -1.50 16 18 S 0.18 4.87 18.56 -107.50 -2.00 2.87 16 19 C -0.60 -16.28 9.00 30.94 0.28 -16.00 16 20 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 21 C 0.08 2.26 5.49 -17.46 -0.10 2.17 16 22 N -0.86 -24.66 13.22 55.49 0.73 -23.93 16 23 Si 0.92 20.57 29.55 -169.99 -5.02 15.54 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 0.74 7.75 -51.93 -0.40 0.34 16 33 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.43 8.14 -51.92 -0.42 0.00 16 37 H 0.39 3.57 6.63 -40.82 -0.27 3.30 16 38 H 0.11 1.10 6.40 -52.49 -0.34 0.76 16 39 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.14 2.94 5.03 -52.48 -0.26 2.68 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -37.75 374.99 -9.59 -47.35 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.71 Total: 4.12 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -0.95 Total: -24.78 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.49 Total: -33.42 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.57 Total: -23.70 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 12.72 SS G_CDS: -3.48 Total: 9.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.75 -9.59 -47.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900891213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.036 kcal (2) G-P(sol) polarization free energy of solvation -37.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds