Wall clock time and date at job start Sat Apr 11 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46891 * 2 1 4 4 S 1.81396 * 109.47026 * 239.99642 * 2 1 3 5 5 C 1.76199 * 103.00111 * 67.34561 * 4 2 1 6 6 C 1.38933 * 120.05739 * 84.21564 * 5 4 2 7 7 C 1.38099 * 119.94452 * 180.23067 * 6 5 4 8 8 C 1.38475 * 120.05392 * 359.51819 * 7 6 5 9 9 F 1.35101 * 119.94622 * 180.27069 * 8 7 6 10 10 C 1.38481 * 120.11323 * 0.25475 * 8 7 6 11 11 C 1.38109 * 120.05051 * 359.97384 * 10 8 7 12 12 C 1.50701 * 109.47046 * 119.99511 * 2 1 3 13 13 O 1.20817 * 120.00022 * 100.00183 * 12 2 1 14 14 O 1.34230 * 119.99817 * 280.00523 * 12 2 1 15 15 C 1.45196 * 116.99992 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.47685 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99507 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00616 * 180.02562 * 16 15 14 19 19 C 1.46494 * 119.99992 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46954 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99920 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00034 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00124 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46929 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47131 * 119.99932 * 24 22 20 27 27 H 1.48504 * 109.46841 * 240.00223 * 24 22 20 28 28 H 1.09006 * 109.46584 * 181.45715 * 1 2 3 29 29 H 1.08992 * 109.47032 * 301.45910 * 1 2 3 30 30 H 1.08996 * 109.47169 * 61.46340 * 1 2 3 31 31 H 1.07997 * 120.03027 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.97214 * 179.79055 * 7 6 5 33 33 H 1.08002 * 119.97546 * 179.97438 * 10 8 7 34 34 H 1.08001 * 120.02249 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.47021 * 299.99998 * 15 14 12 36 36 H 1.09006 * 109.47191 * 59.99349 * 15 14 12 37 37 H 0.96999 * 119.99850 * 359.97438 * 18 16 15 38 38 H 1.09002 * 109.47468 * 299.99850 * 19 18 16 39 39 H 1.08998 * 109.47143 * 59.99828 * 19 18 16 40 40 H 0.97005 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4810 5 6 1.6434 0.2197 -2.7878 6 6 2.4410 1.3031 -3.1349 7 6 2.0513 2.1468 -4.1563 8 6 0.8716 1.9081 -4.8411 9 9 0.4952 2.7318 -5.8436 10 6 0.0771 0.8263 -4.5002 11 6 0.4602 -0.0177 -3.4763 12 6 2.0324 -0.7103 1.2305 13 8 2.4051 -1.8572 1.1562 14 8 2.0657 -0.0688 2.4092 15 6 2.5620 -0.8146 3.5518 16 6 2.5264 0.0614 4.7775 17 8 2.1229 1.2023 4.6959 18 7 2.9439 -0.4225 5.9641 19 6 2.9097 0.4293 7.1554 20 6 3.4247 -0.3448 8.3414 21 1 3.7457 -1.3688 8.2198 22 6 3.4871 0.2545 9.5815 23 7 3.0967 1.5016 9.7296 24 14 4.1261 -0.7049 11.0515 25 1 4.4983 -2.0771 10.6231 26 1 5.3194 -0.0192 11.6093 27 1 3.0680 -0.7812 12.0907 28 1 -0.3633 -1.0274 0.0261 29 1 -0.3633 0.5363 0.8765 30 1 -0.3633 0.4909 -0.9028 31 1 3.3634 1.4871 -2.6041 32 1 2.6693 2.9910 -4.4242 33 1 -0.8427 0.6424 -5.0355 34 1 -0.1595 -0.8615 -3.2112 35 1 1.9351 -1.6916 3.7133 36 1 3.5875 -1.1312 3.3615 37 1 3.2669 -1.3348 6.0293 38 1 3.5368 1.3061 6.9933 39 1 1.8845 0.7462 7.3463 40 1 3.1402 1.9231 10.6022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924250832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:38 Heat of formation + Delta-G solvation = -141.500543 kcal Electronic energy + Delta-G solvation = -25132.938576 eV Core-core repulsion = 20953.748108 eV Total energy + Delta-G solvation = -4179.190468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.48624 -40.75364 -39.35993 -38.79581 -36.53810 -34.29841 -33.78476 -32.44572 -31.80579 -30.99935 -29.28495 -26.83886 -25.20145 -23.63035 -23.35507 -22.67516 -21.24704 -20.00400 -18.68402 -18.11395 -17.84037 -17.38228 -16.88107 -16.79934 -16.25102 -16.14304 -15.66420 -15.46175 -15.08123 -14.88399 -14.81749 -14.30606 -14.19283 -13.92462 -13.72812 -13.62896 -13.18331 -12.99323 -12.77484 -12.55345 -12.32105 -12.06548 -12.02930 -11.81475 -11.69615 -11.01843 -10.97478 -10.80542 -10.76449 -10.64159 -10.37433 -9.74084 -9.45599 -9.27444 -9.20930 -8.82056 -8.20162 -8.03615 -6.22640 -4.30175 0.09715 0.62070 1.02437 1.87285 2.03604 2.36271 2.94929 3.11341 3.20554 3.27895 3.30833 3.62930 3.83073 4.11072 4.28613 4.29169 4.34181 4.48234 4.62959 4.64308 4.70096 5.03402 5.10069 5.13318 5.16059 5.17704 5.27615 5.28344 5.29509 5.48132 5.53450 5.64886 5.66644 6.15115 6.17786 7.18025 7.25165 7.41763 7.45034 7.58498 7.88448 8.45010 8.67115 8.91374 9.36465 10.87482 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.031547 B = 0.001626 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.359428 B =17218.992419 C =17641.377484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.125 0.875 4 S -0.066 6.066 5 C -0.147 4.147 6 C -0.040 4.040 7 C -0.162 4.162 8 C 0.126 3.874 9 F -0.135 7.135 10 C -0.164 4.164 11 C -0.036 4.036 12 C 0.483 3.517 13 O -0.490 6.490 14 O -0.321 6.321 15 C 0.049 3.951 16 C 0.500 3.500 17 O -0.534 6.534 18 N -0.705 5.705 19 C 0.251 3.749 20 C -0.546 4.546 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.393 0.607 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -3.077 -29.268 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.212 4.212 3 H 0.143 0.857 4 S 0.168 5.832 5 C -0.259 4.259 6 C -0.060 4.060 7 C -0.183 4.183 8 C 0.107 3.893 9 F -0.113 7.113 10 C -0.185 4.185 11 C -0.056 4.056 12 C 0.323 3.677 13 O -0.377 6.377 14 O -0.236 6.236 15 C -0.029 4.029 16 C 0.283 3.717 17 O -0.412 6.412 18 N -0.355 5.355 19 C 0.130 3.870 20 C -0.584 4.584 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.226 0.774 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.449 -3.411 -29.183 29.717 hybrid contribution -0.136 0.440 0.744 0.875 sum -4.586 -2.971 -28.439 28.959 Atomic orbital electron populations 1.22040 0.89593 1.04373 1.04246 1.23167 1.01717 1.04035 0.92245 0.85717 1.86179 1.75257 1.28072 0.93732 1.21936 0.99222 1.01522 1.03221 1.21578 0.98504 0.91480 0.94452 1.21248 0.96688 1.02279 0.98086 1.17912 0.94602 0.89732 0.87070 1.91538 1.91143 1.70717 1.57925 1.21248 1.01473 0.95413 1.00324 1.21521 0.94026 0.97491 0.92606 1.22538 0.75344 0.85362 0.84420 1.90710 1.43578 1.17726 1.85712 1.86542 1.76216 1.44489 1.16367 1.22947 1.01678 0.94766 0.83498 1.19855 0.79803 0.87925 0.84164 1.90716 1.46575 1.18494 1.85391 1.46366 1.63245 1.17345 1.08587 1.19193 0.98031 0.90211 0.79516 1.21246 1.44929 0.99259 0.92947 0.91674 1.24955 0.94995 0.94999 0.99039 1.69983 1.46039 1.11763 1.24386 0.86331 0.78576 0.79856 0.81979 1.19590 1.20751 1.20757 0.90463 0.89962 0.90669 0.83813 0.83973 0.83997 0.83729 0.88265 0.88238 0.77369 0.95210 0.95216 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.10 37.16 0.34 -0.80 16 2 C -0.08 -0.81 3.25 -27.88 -0.09 -0.90 16 3 H 0.12 1.08 8.14 -51.92 -0.42 0.65 16 4 S -0.07 -0.62 20.33 -107.50 -2.19 -2.81 16 5 C -0.15 -1.10 5.22 -39.07 -0.20 -1.31 16 6 C -0.04 -0.27 9.79 -39.37 -0.39 -0.65 16 7 C -0.16 -1.03 10.02 -39.54 -0.40 -1.43 16 8 C 0.13 0.88 7.30 -39.40 -0.29 0.60 16 9 F -0.13 -1.06 17.26 2.25 0.04 -1.03 16 10 C -0.16 -0.98 10.02 -39.54 -0.40 -1.37 16 11 C -0.04 -0.22 9.20 -39.37 -0.36 -0.59 16 12 C 0.48 6.26 7.13 36.01 0.26 6.52 16 13 O -0.49 -7.21 15.79 -18.74 -0.30 -7.50 16 14 O -0.32 -4.81 9.75 -45.90 -0.45 -5.26 16 15 C 0.05 0.71 5.94 36.00 0.21 0.92 16 16 C 0.50 9.71 7.91 -10.99 -0.09 9.62 16 17 O -0.53 -12.72 16.50 -14.11 -0.23 -12.95 16 18 N -0.71 -14.22 5.55 -61.47 -0.34 -14.56 16 19 C 0.25 6.45 5.43 -5.20 -0.03 6.42 16 20 C -0.55 -14.43 9.28 -34.44 -0.32 -14.75 16 21 H 0.07 1.61 7.60 -52.49 -0.40 1.21 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.56 13.29 55.43 0.74 -24.83 16 24 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.48 7.13 -51.93 -0.37 0.11 16 31 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.10 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -33.40 374.95 -8.84 -42.23 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.89 Total: 1.68 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.84 Total: 3.93 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.40 Total: -39.38 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.98 Total: -25.72 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.19 Total: -2.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.40 -8.84 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924250832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.266 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds