Wall clock time and date at job start Sat Apr 11 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46891 * 2 1 4 4 S 1.81396 * 109.47026 * 239.99642 * 2 1 3 5 5 C 1.76199 * 103.00111 * 67.34561 * 4 2 1 6 6 C 1.38933 * 120.05739 * 84.21564 * 5 4 2 7 7 C 1.38099 * 119.94452 * 180.23067 * 6 5 4 8 8 C 1.38475 * 120.05392 * 359.51819 * 7 6 5 9 9 F 1.35101 * 119.94622 * 180.27069 * 8 7 6 10 10 C 1.38481 * 120.11323 * 0.25475 * 8 7 6 11 11 C 1.38109 * 120.05051 * 359.97384 * 10 8 7 12 12 C 1.50701 * 109.47046 * 119.99511 * 2 1 3 13 13 O 1.20817 * 120.00022 * 100.00183 * 12 2 1 14 14 O 1.34230 * 119.99817 * 280.00523 * 12 2 1 15 15 C 1.45196 * 116.99992 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.47685 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99507 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00616 * 180.02562 * 16 15 14 19 19 C 1.46494 * 119.99992 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46954 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99920 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00034 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00124 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00162 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46929 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47131 * 119.99932 * 24 22 20 27 27 H 1.48504 * 109.46841 * 240.00223 * 24 22 20 28 28 H 1.09006 * 109.46584 * 181.45715 * 1 2 3 29 29 H 1.08992 * 109.47032 * 301.45910 * 1 2 3 30 30 H 1.08996 * 109.47169 * 61.46340 * 1 2 3 31 31 H 1.07997 * 120.03027 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.97214 * 179.79055 * 7 6 5 33 33 H 1.08002 * 119.97546 * 179.97438 * 10 8 7 34 34 H 1.08001 * 120.02249 * 180.02562 * 11 10 8 35 35 H 1.09002 * 109.47021 * 299.99998 * 15 14 12 36 36 H 1.09006 * 109.47191 * 59.99349 * 15 14 12 37 37 H 0.96999 * 119.99850 * 359.97438 * 18 16 15 38 38 H 1.09002 * 109.47468 * 299.99850 * 19 18 16 39 39 H 1.08998 * 109.47143 * 59.99828 * 19 18 16 40 40 H 0.97005 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4810 5 6 1.6434 0.2197 -2.7878 6 6 2.4410 1.3031 -3.1349 7 6 2.0513 2.1468 -4.1563 8 6 0.8716 1.9081 -4.8411 9 9 0.4952 2.7318 -5.8436 10 6 0.0771 0.8263 -4.5002 11 6 0.4602 -0.0177 -3.4763 12 6 2.0324 -0.7103 1.2305 13 8 2.4051 -1.8572 1.1562 14 8 2.0657 -0.0688 2.4092 15 6 2.5620 -0.8146 3.5518 16 6 2.5264 0.0614 4.7775 17 8 2.1229 1.2023 4.6959 18 7 2.9439 -0.4225 5.9641 19 6 2.9097 0.4293 7.1554 20 6 3.4247 -0.3448 8.3414 21 1 3.7457 -1.3688 8.2198 22 6 3.4871 0.2545 9.5815 23 7 3.0967 1.5016 9.7296 24 14 4.1261 -0.7049 11.0515 25 1 4.4983 -2.0771 10.6231 26 1 5.3194 -0.0192 11.6093 27 1 3.0680 -0.7812 12.0907 28 1 -0.3633 -1.0274 0.0261 29 1 -0.3633 0.5363 0.8765 30 1 -0.3633 0.4909 -0.9028 31 1 3.3634 1.4871 -2.6041 32 1 2.6693 2.9910 -4.4242 33 1 -0.8427 0.6424 -5.0355 34 1 -0.1595 -0.8615 -3.2112 35 1 1.9351 -1.6916 3.7133 36 1 3.5875 -1.1312 3.3615 37 1 3.2669 -1.3348 6.0293 38 1 3.5368 1.3061 6.9933 39 1 1.8845 0.7462 7.3463 40 1 3.1402 1.9231 10.6022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924250832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:38 Heat of formation + Delta-G solvation = -160.915231 kcal Electronic energy + Delta-G solvation = -25133.780460 eV Core-core repulsion = 20953.748108 eV Total energy + Delta-G solvation = -4180.032352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.03826 -41.86851 -40.40999 -39.84725 -37.70477 -36.19256 -34.56451 -34.40576 -32.27304 -31.51952 -30.80605 -28.58363 -26.09533 -24.60043 -24.09568 -23.87036 -22.27164 -21.66486 -19.49147 -19.15299 -18.89349 -18.42379 -17.95543 -17.69366 -17.38511 -17.11092 -16.84658 -16.70273 -16.29391 -16.20695 -15.88231 -15.36623 -14.90651 -14.72619 -14.61159 -14.41685 -14.29168 -14.18056 -14.01235 -13.79101 -13.59895 -13.31914 -13.11178 -12.91683 -12.75957 -12.66746 -12.22663 -12.15156 -11.97288 -11.74809 -11.47079 -11.31025 -10.93602 -10.83358 -10.20262 -9.93942 -9.79421 -8.91118 -8.30018 -6.46459 -0.49163 0.15918 0.34695 0.90909 1.30144 1.36222 1.45120 1.45308 1.53758 1.58995 2.32215 2.44467 2.52261 3.05540 3.13885 3.43787 3.63090 3.67271 3.70070 3.85927 3.89871 4.03019 4.03579 4.18857 4.22682 4.55635 4.63290 4.65799 4.86391 5.01200 5.01934 5.04999 5.06251 5.13342 5.18318 5.21659 5.41340 5.62256 5.70321 5.81850 6.40436 6.62793 6.76671 7.19999 7.34764 8.82216 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.031547 B = 0.001626 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.359428 B =17218.992419 C =17641.377484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 H 0.134 0.866 4 S -0.086 6.086 5 C -0.153 4.153 6 C -0.045 4.045 7 C -0.164 4.164 8 C 0.113 3.887 9 F -0.142 7.142 10 C -0.161 4.161 11 C -0.035 4.035 12 C 0.486 3.514 13 O -0.508 6.508 14 O -0.340 6.340 15 C 0.060 3.940 16 C 0.500 3.500 17 O -0.583 6.583 18 N -0.698 5.698 19 C 0.266 3.734 20 C -0.557 4.557 21 H 0.086 0.914 22 C 0.005 3.995 23 N -0.930 5.930 24 Si 0.985 3.015 25 H -0.253 1.253 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.413 0.587 38 H -0.007 1.007 39 H -0.007 1.007 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -4.903 -30.166 30.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.209 4.209 3 H 0.152 0.848 4 S 0.148 5.852 5 C -0.265 4.265 6 C -0.065 4.065 7 C -0.184 4.184 8 C 0.094 3.906 9 F -0.121 7.121 10 C -0.181 4.181 11 C -0.056 4.056 12 C 0.327 3.673 13 O -0.396 6.396 14 O -0.255 6.255 15 C -0.017 4.017 16 C 0.286 3.714 17 O -0.464 6.464 18 N -0.349 5.349 19 C 0.143 3.857 20 C -0.594 4.594 21 H 0.104 0.896 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.808 3.192 25 H -0.176 1.176 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.249 0.751 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.254 -5.290 -30.114 30.869 hybrid contribution -0.219 1.055 0.903 1.406 sum -4.473 -4.235 -29.211 29.853 Atomic orbital electron populations 1.22045 0.88209 1.04668 1.04881 1.23242 1.02722 1.04032 0.90890 0.84838 1.86253 1.75690 1.28918 0.94381 1.21911 1.00082 1.01641 1.02816 1.21705 0.98836 0.91339 0.94652 1.21410 0.96704 1.02573 0.97723 1.18149 0.95160 0.90126 0.87184 1.91521 1.91249 1.71020 1.58293 1.21454 1.01921 0.94710 1.00046 1.21694 0.93706 0.97867 0.92303 1.23073 0.74605 0.85256 0.84320 1.90697 1.44473 1.18544 1.85848 1.86539 1.76578 1.45299 1.17089 1.22810 1.03948 0.93597 0.81336 1.20654 0.77875 0.87739 0.85145 1.90693 1.48448 1.21001 1.86246 1.46036 1.63581 1.17668 1.07647 1.18640 0.95017 0.90093 0.81907 1.21650 1.44536 1.00149 0.93108 0.89564 1.26040 0.94999 0.95905 1.02557 1.70136 1.47457 1.13867 1.25371 0.85108 0.77672 0.78910 0.77506 1.17642 1.20548 1.20534 0.90270 0.90515 0.88877 0.82991 0.82601 0.82117 0.82205 0.85500 0.85623 0.75087 0.98904 0.98873 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.10 71.98 0.66 -1.36 16 2 C -0.08 -1.47 3.25 29.85 0.10 -1.37 16 3 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 4 S -0.09 -1.51 20.33 -56.49 -1.15 -2.66 16 5 C -0.15 -2.05 5.22 22.60 0.12 -1.93 16 6 C -0.04 -0.54 9.79 22.40 0.22 -0.32 16 7 C -0.16 -1.85 10.02 22.29 0.22 -1.62 16 8 C 0.11 1.42 7.30 22.38 0.16 1.58 16 9 F -0.14 -2.09 17.26 44.97 0.78 -1.31 16 10 C -0.16 -1.60 10.02 22.30 0.22 -1.38 16 11 C -0.04 -0.37 9.20 22.41 0.21 -0.16 16 12 C 0.49 11.99 7.13 71.24 0.51 12.50 16 13 O -0.51 -14.15 15.79 21.99 0.35 -13.80 16 14 O -0.34 -9.85 9.75 -45.06 -0.44 -10.29 16 15 C 0.06 1.65 5.94 71.23 0.42 2.07 16 16 C 0.50 19.46 7.91 87.66 0.69 20.15 16 17 O -0.58 -28.64 16.50 15.73 0.26 -28.38 16 18 N -0.70 -28.12 5.55 -466.79 -2.59 -30.71 16 19 C 0.27 14.14 5.43 85.64 0.46 14.60 16 20 C -0.56 -29.42 9.28 25.60 0.24 -29.18 16 21 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 22 C 0.00 0.26 5.46 84.65 0.46 0.72 16 23 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 24 Si 0.98 41.48 29.54 68.60 2.03 43.51 16 25 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.00 7.13 -2.39 -0.02 0.99 16 31 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 34 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.13 2.84 8.13 -2.39 -0.02 2.82 16 36 H 0.13 2.86 8.13 -2.38 -0.02 2.84 16 37 H 0.41 13.31 8.32 -92.71 -0.77 12.54 16 38 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -73.97 374.95 4.52 -69.45 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.31 Total: 14.62 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 4.69 Total: 14.31 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -2.30 Total: -85.44 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: 0.17 Total: -52.47 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -1.15 Total: -2.66 kcal Total: -73.97 4.52 -69.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924250832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.464 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds