Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.47025 * 2 1 4 4 S 1.81406 * 109.47307 * 119.99136 * 2 1 3 5 5 C 1.76204 * 103.00017 * 292.59663 * 4 2 1 6 6 C 1.38938 * 120.05037 * 95.21293 * 5 4 2 7 7 C 1.38099 * 119.94196 * 179.97438 * 6 5 4 8 8 C 1.38487 * 120.05403 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.94374 * 179.97438 * 8 7 6 10 10 C 1.38474 * 120.10926 * 0.24768 * 8 7 6 11 11 C 1.38103 * 120.05373 * 359.49444 * 10 8 7 12 12 C 1.50696 * 109.47333 * 239.99660 * 2 1 3 13 13 O 1.20826 * 119.99834 * 264.99779 * 12 2 1 14 14 O 1.34225 * 120.00116 * 84.99930 * 12 2 1 15 15 C 1.45198 * 117.00004 * 179.97438 * 14 12 2 16 16 C 1.50701 * 109.47405 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99664 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00507 * 180.02562 * 16 15 14 19 19 C 1.46493 * 120.00162 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47104 * 179.97438 * 19 18 16 21 21 H 1.07995 * 119.99935 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00139 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00274 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47074 * 89.99660 * 24 22 20 26 26 H 1.48496 * 109.47405 * 209.99448 * 24 22 20 27 27 H 1.48501 * 109.47028 * 329.99840 * 24 22 20 28 28 H 1.09002 * 109.46593 * 185.94218 * 1 2 3 29 29 H 1.09002 * 109.46850 * 305.93503 * 1 2 3 30 30 H 1.08997 * 109.46855 * 65.94122 * 1 2 3 31 31 H 1.07998 * 120.03169 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.97501 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.97167 * 179.72890 * 10 8 7 34 34 H 1.08002 * 120.02895 * 180.25925 * 11 10 8 35 35 H 1.08999 * 109.47206 * 299.99638 * 15 14 12 36 36 H 1.09001 * 109.47267 * 59.99674 * 15 14 12 37 37 H 0.96998 * 119.99672 * 359.97438 * 18 16 15 38 38 H 1.09000 * 109.47618 * 300.00125 * 19 18 16 39 39 H 1.08998 * 109.47420 * 60.00115 * 19 18 16 40 40 H 0.96997 * 119.99693 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 16 2.1348 -0.8549 1.4813 5 6 1.6449 0.2212 2.7878 6 6 0.4535 -0.0050 3.4657 7 6 0.0720 0.8395 4.4896 8 6 0.8757 1.9113 4.8405 9 9 0.5001 2.7364 5.8422 10 6 2.0609 2.1421 4.1625 11 6 2.4493 1.2973 3.1414 12 6 2.0324 -0.7104 -1.2304 13 8 2.3198 -1.8828 -1.1760 14 8 2.1606 -0.0409 -2.3866 15 6 2.6508 -0.7889 -3.5306 16 6 2.7277 0.1205 -4.7299 17 8 2.4011 1.2843 -4.6303 18 7 3.1585 -0.3597 -5.9132 19 6 3.2327 0.5242 -7.0791 20 6 3.7416 -0.2521 -8.2664 21 1 3.9849 -1.2991 -8.1629 22 6 3.8955 0.3743 -9.4849 23 7 4.3391 -0.3033 -10.5212 24 14 3.4739 2.1853 -9.6642 25 1 4.6770 3.0049 -9.3709 26 1 3.0192 2.4527 -11.0523 27 1 2.3905 2.5379 -8.7118 28 1 -0.3632 -1.0222 0.1064 29 1 -0.3633 0.6031 0.8321 30 1 -0.3633 0.4189 -0.9384 31 1 -0.1738 -0.8405 3.1922 32 1 -0.8543 0.6644 5.0167 33 1 2.6838 2.9812 4.4351 34 1 3.3758 1.4753 2.6156 35 1 3.6425 -1.1832 -3.3090 36 1 1.9710 -1.6139 -3.7436 37 1 3.4193 -1.2905 -5.9929 38 1 2.2407 0.9182 -7.3002 39 1 3.9123 1.3495 -6.8667 40 1 4.4477 0.1375 -11.3784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924250835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -137.563070 kcal Electronic energy + Delta-G solvation = -25195.743365 eV Core-core repulsion = 21016.723639 eV Total energy + Delta-G solvation = -4179.019726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.51254 -40.81353 -39.38652 -38.95607 -36.61183 -34.43034 -33.81881 -32.46804 -31.83211 -31.02822 -29.59038 -27.31761 -25.26305 -23.65690 -23.38194 -22.29202 -21.25998 -20.19180 -18.72445 -18.17054 -17.88445 -17.47167 -16.92795 -16.85947 -16.47765 -16.19057 -15.74839 -15.65947 -15.09081 -14.96011 -14.87451 -14.22002 -14.21906 -13.96966 -13.78309 -13.67878 -13.31338 -13.08339 -12.85218 -12.65151 -12.42189 -12.35773 -12.12960 -12.07231 -11.72218 -11.10704 -10.92243 -10.82967 -10.79993 -10.67273 -10.03407 -9.76874 -9.58041 -9.42235 -9.25950 -8.85125 -8.32239 -8.23768 -6.27026 -4.30404 0.06384 0.59434 0.98201 1.82109 2.00974 2.29324 2.92195 2.95966 3.22800 3.29790 3.37166 3.60275 3.71910 4.08404 4.26081 4.27992 4.29260 4.41459 4.58852 4.61214 4.67288 4.96102 5.06370 5.07356 5.09778 5.12180 5.15675 5.23810 5.25753 5.45501 5.50756 5.60500 5.63079 6.08727 6.15070 6.68540 6.96694 7.03606 7.27748 7.39941 8.00144 8.36888 8.62989 8.75341 9.31790 10.84683 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.001730 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.433951 B =16181.948857 C =16803.749846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 H 0.124 0.876 4 S -0.066 6.066 5 C -0.147 4.147 6 C -0.035 4.035 7 C -0.164 4.164 8 C 0.127 3.873 9 F -0.135 7.135 10 C -0.163 4.163 11 C -0.039 4.039 12 C 0.483 3.517 13 O -0.489 6.489 14 O -0.323 6.323 15 C 0.049 3.951 16 C 0.502 3.498 17 O -0.537 6.537 18 N -0.698 5.698 19 C 0.222 3.778 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.890 5.890 24 Si 0.877 3.123 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.261 1.261 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.400 0.600 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 0.872 31.345 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.211 4.211 3 H 0.142 0.858 4 S 0.167 5.833 5 C -0.259 4.259 6 C -0.056 4.056 7 C -0.185 4.185 8 C 0.107 3.893 9 F -0.113 7.113 10 C -0.183 4.183 11 C -0.060 4.060 12 C 0.323 3.677 13 O -0.375 6.375 14 O -0.237 6.237 15 C -0.028 4.028 16 C 0.285 3.715 17 O -0.414 6.414 18 N -0.349 5.349 19 C 0.101 3.899 20 C -0.585 4.585 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.527 5.527 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.185 1.185 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.234 0.766 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.440 0.395 31.203 32.080 hybrid contribution -0.624 1.711 -0.166 1.829 sum -8.064 2.106 31.037 32.137 Atomic orbital electron populations 1.22054 0.89570 1.04364 1.04290 1.23155 1.01650 1.04059 0.92281 0.85776 1.86184 1.75394 1.27958 0.93760 1.21916 0.99116 1.01599 1.03242 1.21521 0.94072 0.97380 0.92624 1.21248 1.01399 0.95557 1.00266 1.17915 0.94553 0.89745 0.87064 1.91538 1.91197 1.70587 1.57984 1.21251 0.96657 1.02286 0.98127 1.21582 0.98566 0.91432 0.94412 1.22537 0.75042 0.85811 0.84271 1.90720 1.45356 1.16486 1.84974 1.86533 1.76633 1.42760 1.17823 1.22902 1.02034 0.94388 0.83513 1.19892 0.79202 0.88359 0.84016 1.90707 1.48751 1.17439 1.84535 1.46065 1.64525 1.15050 1.09219 1.19562 0.97282 0.90469 0.82627 1.21062 1.46115 0.98661 0.92666 0.90094 1.24787 0.93937 0.98465 0.95350 1.69876 1.44782 1.36814 1.01203 0.86818 0.79882 0.85060 0.77942 1.19773 1.20815 1.18494 0.90274 0.90607 0.90141 0.83723 0.83986 0.83964 0.83800 0.87999 0.88042 0.76647 0.95396 0.95847 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.04 37.16 0.34 -0.74 16 2 C -0.08 -0.77 3.24 -27.88 -0.09 -0.86 16 3 H 0.12 1.02 8.14 -51.92 -0.42 0.60 16 4 S -0.07 -0.61 20.39 -107.50 -2.19 -2.80 16 5 C -0.15 -1.06 5.32 -39.07 -0.21 -1.27 16 6 C -0.04 -0.21 9.46 -39.37 -0.37 -0.58 16 7 C -0.16 -0.94 10.02 -39.54 -0.40 -1.33 16 8 C 0.13 0.86 7.30 -39.40 -0.29 0.57 16 9 F -0.13 -1.03 17.26 2.25 0.04 -1.00 16 10 C -0.16 -0.99 10.02 -39.54 -0.40 -1.39 16 11 C -0.04 -0.25 9.79 -39.37 -0.39 -0.64 16 12 C 0.48 6.03 7.08 36.00 0.25 6.29 16 13 O -0.49 -6.99 15.89 -18.75 -0.30 -7.29 16 14 O -0.32 -4.62 9.75 -45.89 -0.45 -5.07 16 15 C 0.05 0.68 5.94 36.01 0.21 0.90 16 16 C 0.50 9.23 7.91 -10.99 -0.09 9.15 16 17 O -0.54 -12.00 16.50 -14.11 -0.23 -12.23 16 18 N -0.70 -13.46 5.55 -61.47 -0.34 -13.80 16 19 C 0.22 5.28 4.50 -5.20 -0.02 5.26 16 20 C -0.55 -14.62 9.83 -34.44 -0.34 -14.96 16 21 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 23 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 24 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.45 7.57 -51.93 -0.39 0.06 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.10 1.23 8.13 -51.93 -0.42 0.80 16 36 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 37 H 0.40 6.62 8.32 -40.82 -0.34 6.28 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -33.44 372.17 -8.52 -41.96 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.88 Total: 1.05 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.88 Total: 2.47 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.43 Total: -38.98 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.98 Total: -24.59 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -2.19 Total: -2.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.44 -8.52 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924250835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.607 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds