Wall clock time and date at job start Sat Apr 11 2020 06:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.47025 * 2 1 4 4 S 1.81406 * 109.47307 * 119.99136 * 2 1 3 5 5 C 1.76204 * 103.00017 * 292.59663 * 4 2 1 6 6 C 1.38938 * 120.05037 * 95.21293 * 5 4 2 7 7 C 1.38099 * 119.94196 * 179.97438 * 6 5 4 8 8 C 1.38487 * 120.05403 * 0.02562 * 7 6 5 9 9 F 1.35098 * 119.94374 * 179.97438 * 8 7 6 10 10 C 1.38474 * 120.10926 * 0.24768 * 8 7 6 11 11 C 1.38103 * 120.05373 * 359.49444 * 10 8 7 12 12 C 1.50696 * 109.47333 * 239.99660 * 2 1 3 13 13 O 1.20826 * 119.99834 * 264.99779 * 12 2 1 14 14 O 1.34225 * 120.00116 * 84.99930 * 12 2 1 15 15 C 1.45198 * 117.00004 * 179.97438 * 14 12 2 16 16 C 1.50701 * 109.47405 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99664 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00507 * 180.02562 * 16 15 14 19 19 C 1.46493 * 120.00162 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47104 * 179.97438 * 19 18 16 21 21 H 1.07995 * 119.99935 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00139 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00274 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47074 * 89.99660 * 24 22 20 26 26 H 1.48496 * 109.47405 * 209.99448 * 24 22 20 27 27 H 1.48501 * 109.47028 * 329.99840 * 24 22 20 28 28 H 1.09002 * 109.46593 * 185.94218 * 1 2 3 29 29 H 1.09002 * 109.46850 * 305.93503 * 1 2 3 30 30 H 1.08997 * 109.46855 * 65.94122 * 1 2 3 31 31 H 1.07998 * 120.03169 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.97501 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.97167 * 179.72890 * 10 8 7 34 34 H 1.08002 * 120.02895 * 180.25925 * 11 10 8 35 35 H 1.08999 * 109.47206 * 299.99638 * 15 14 12 36 36 H 1.09001 * 109.47267 * 59.99674 * 15 14 12 37 37 H 0.96998 * 119.99672 * 359.97438 * 18 16 15 38 38 H 1.09000 * 109.47618 * 300.00125 * 19 18 16 39 39 H 1.08998 * 109.47420 * 60.00115 * 19 18 16 40 40 H 0.96997 * 119.99693 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 16 2.1348 -0.8549 1.4813 5 6 1.6449 0.2212 2.7878 6 6 0.4535 -0.0050 3.4657 7 6 0.0720 0.8395 4.4896 8 6 0.8757 1.9113 4.8405 9 9 0.5001 2.7364 5.8422 10 6 2.0609 2.1421 4.1625 11 6 2.4493 1.2973 3.1414 12 6 2.0324 -0.7104 -1.2304 13 8 2.3198 -1.8828 -1.1760 14 8 2.1606 -0.0409 -2.3866 15 6 2.6508 -0.7889 -3.5306 16 6 2.7277 0.1205 -4.7299 17 8 2.4011 1.2843 -4.6303 18 7 3.1585 -0.3597 -5.9132 19 6 3.2327 0.5242 -7.0791 20 6 3.7416 -0.2521 -8.2664 21 1 3.9849 -1.2991 -8.1629 22 6 3.8955 0.3743 -9.4849 23 7 4.3391 -0.3033 -10.5212 24 14 3.4739 2.1853 -9.6642 25 1 4.6770 3.0049 -9.3709 26 1 3.0192 2.4527 -11.0523 27 1 2.3905 2.5379 -8.7118 28 1 -0.3632 -1.0222 0.1064 29 1 -0.3633 0.6031 0.8321 30 1 -0.3633 0.4189 -0.9384 31 1 -0.1738 -0.8405 3.1922 32 1 -0.8543 0.6644 5.0167 33 1 2.6838 2.9812 4.4351 34 1 3.3758 1.4753 2.6156 35 1 3.6425 -1.1832 -3.3090 36 1 1.9710 -1.6139 -3.7436 37 1 3.4193 -1.2905 -5.9929 38 1 2.2407 0.9182 -7.3002 39 1 3.9123 1.3495 -6.8667 40 1 4.4477 0.1375 -11.3784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924250835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:40 Heat of formation + Delta-G solvation = -157.082912 kcal Electronic energy + Delta-G solvation = -25196.589809 eV Core-core repulsion = 21016.723639 eV Total energy + Delta-G solvation = -4179.866170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.04046 -41.87462 -40.46093 -39.84799 -37.71711 -36.21445 -34.55589 -34.44928 -32.27369 -31.52733 -31.11328 -28.91833 -26.08114 -24.18994 -24.05935 -23.86200 -22.26117 -21.74524 -19.55859 -19.20768 -18.91195 -18.51002 -17.99063 -17.86985 -17.38862 -17.10462 -16.85564 -16.70067 -16.33518 -16.16743 -15.88502 -15.36389 -14.98024 -14.86329 -14.61575 -14.44388 -14.38416 -14.27150 -14.15840 -13.85537 -13.64310 -13.33314 -13.11770 -13.08027 -12.71411 -12.65917 -12.15223 -11.97955 -11.93592 -11.76056 -11.66812 -11.31571 -10.99799 -10.92492 -10.20480 -10.05335 -9.79209 -8.91871 -8.40062 -6.47868 -0.49584 0.15833 0.33526 0.91368 1.27957 1.33874 1.36064 1.37606 1.47603 1.50089 2.28063 2.40255 2.45508 2.95348 3.13765 3.43793 3.62248 3.65994 3.67480 3.85852 3.90116 4.02604 4.03509 4.18717 4.22527 4.55575 4.63217 4.66139 4.74172 4.86315 5.00136 5.01197 5.02836 5.05025 5.10601 5.18228 5.23488 5.38751 5.70154 6.04965 6.40427 6.52331 6.70350 7.10728 7.26051 8.74430 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.001730 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.433951 B =16181.948857 C =16803.749846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.134 0.866 4 S -0.090 6.090 5 C -0.151 4.151 6 C -0.035 4.035 7 C -0.161 4.161 8 C 0.113 3.887 9 F -0.142 7.142 10 C -0.164 4.164 11 C -0.045 4.045 12 C 0.486 3.514 13 O -0.508 6.508 14 O -0.338 6.338 15 C 0.057 3.943 16 C 0.506 3.494 17 O -0.577 6.577 18 N -0.696 5.696 19 C 0.232 3.768 20 C -0.549 4.549 21 H 0.061 0.939 22 C 0.027 3.973 23 N -0.930 5.930 24 Si 0.937 3.063 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.258 1.258 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.413 0.587 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 1.426 33.060 34.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.208 4.208 3 H 0.152 0.848 4 S 0.144 5.856 5 C -0.263 4.263 6 C -0.055 4.055 7 C -0.181 4.181 8 C 0.094 3.906 9 F -0.121 7.121 10 C -0.184 4.184 11 C -0.065 4.065 12 C 0.327 3.673 13 O -0.396 6.396 14 O -0.254 6.254 15 C -0.020 4.020 16 C 0.291 3.709 17 O -0.458 6.458 18 N -0.348 5.348 19 C 0.109 3.891 20 C -0.587 4.587 21 H 0.080 0.920 22 C -0.174 4.174 23 N -0.569 5.569 24 Si 0.761 3.239 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.182 1.182 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.249 0.751 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.243 0.917 32.939 33.967 hybrid contribution -0.364 1.477 -0.612 1.640 sum -8.607 2.394 32.327 33.538 Atomic orbital electron populations 1.22062 0.88098 1.04860 1.04818 1.23230 1.02705 1.04022 0.90804 0.84829 1.86277 1.75862 1.28901 0.94577 1.21886 0.99942 1.01681 1.02821 1.21690 0.93772 0.97734 0.92336 1.21451 1.01859 0.94856 0.99976 1.18151 0.95125 0.90141 0.87187 1.91520 1.91306 1.70898 1.58365 1.21411 0.96668 1.02571 0.97765 1.21707 0.98897 0.91293 0.94612 1.23083 0.74238 0.85694 0.84264 1.90709 1.46337 1.17403 1.85170 1.86528 1.76925 1.43481 1.18424 1.22801 1.04107 0.93224 0.81819 1.20532 0.77448 0.88291 0.84589 1.90686 1.50331 1.19509 1.85232 1.45856 1.64930 1.15282 1.08708 1.19176 0.96180 0.90521 0.83231 1.21280 1.45475 0.98139 0.93828 0.92045 1.25598 0.93922 1.02695 0.95162 1.69982 1.46275 1.38722 1.01896 0.85862 0.79858 0.80016 0.78193 1.18969 1.19951 1.18225 0.90078 0.88843 0.90524 0.82230 0.82137 0.82601 0.82976 0.85720 0.85602 0.75054 0.96397 0.96542 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.04 71.98 0.65 -1.17 16 2 C -0.08 -1.35 3.24 29.85 0.10 -1.25 16 3 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 4 S -0.09 -1.52 20.39 -56.49 -1.15 -2.67 16 5 C -0.15 -1.93 5.32 22.60 0.12 -1.81 16 6 C -0.03 -0.34 9.46 22.40 0.21 -0.13 16 7 C -0.16 -1.51 10.02 22.30 0.22 -1.28 16 8 C 0.11 1.35 7.30 22.39 0.16 1.52 16 9 F -0.14 -2.01 17.26 44.97 0.78 -1.23 16 10 C -0.16 -1.74 10.02 22.29 0.22 -1.52 16 11 C -0.04 -0.51 9.79 22.40 0.22 -0.29 16 12 C 0.49 11.41 7.08 71.23 0.50 11.92 16 13 O -0.51 -13.81 15.89 21.96 0.35 -13.46 16 14 O -0.34 -9.18 9.75 -45.02 -0.44 -9.62 16 15 C 0.06 1.48 5.94 71.24 0.42 1.91 16 16 C 0.51 18.03 7.91 87.66 0.69 18.72 16 17 O -0.58 -25.48 16.50 15.74 0.26 -25.22 16 18 N -0.70 -26.28 5.55 -466.79 -2.59 -28.87 16 19 C 0.23 10.95 4.50 85.63 0.38 11.34 16 20 C -0.55 -29.49 9.83 25.60 0.25 -29.24 16 21 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 22 C 0.03 1.48 5.47 84.65 0.46 1.94 16 23 N -0.93 -54.68 13.96 21.45 0.30 -54.38 16 24 Si 0.94 42.98 27.47 68.60 1.88 44.86 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.26 -11.65 6.54 99.48 0.65 -10.99 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 0.89 7.57 -2.39 -0.02 0.87 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.13 2.70 8.13 -2.39 -0.02 2.68 16 36 H 0.13 2.69 8.13 -2.39 -0.02 2.67 16 37 H 0.41 13.29 8.32 -92.71 -0.77 12.51 16 38 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 39 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 40 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -71.34 372.17 4.27 -67.07 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.26 Total: 12.87 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 4.63 Total: 10.65 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.29 Total: -83.25 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: 0.17 Total: -48.31 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -1.15 Total: -2.67 kcal Total: -71.34 4.27 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924250835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.011 kcal (2) G-P(sol) polarization free energy of solvation -71.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds