Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.47081 * 2 1 4 4 C 1.34227 * 117.00252 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00332 * 179.97438 * 4 3 2 7 7 N 1.46492 * 109.47347 * 180.02562 * 6 4 3 8 8 C 1.46508 * 119.99823 * 270.00140 * 7 6 4 9 9 C 1.50700 * 109.46706 * 269.99813 * 8 7 6 10 10 H 1.07997 * 120.00395 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99275 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99615 * 180.02562 * 11 9 8 13 13 Si 1.86789 * 120.00410 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47302 * 90.00438 * 13 11 9 15 15 H 1.48510 * 109.47301 * 210.00048 * 13 11 9 16 16 H 1.48505 * 109.47421 * 330.00282 * 13 11 9 17 17 C 1.39020 * 120.00421 * 89.99802 * 7 6 4 18 18 C 1.39080 * 119.63883 * 184.99839 * 17 7 6 19 19 C 1.39537 * 118.96321 * 180.02562 * 18 17 7 20 20 C 1.48164 * 120.87514 * 179.97438 * 19 18 17 21 21 N 1.34780 * 120.00060 * 180.02562 * 20 19 18 22 22 O 1.21516 * 120.00248 * 0.02562 * 20 19 18 23 23 C 1.39963 * 118.24973 * 359.97438 * 19 18 17 24 24 C 1.38127 * 119.16252 * 0.28125 * 23 19 18 25 25 Cl 1.73600 * 119.51714 * 179.69746 * 24 23 19 26 26 N 1.32011 * 120.96635 * 359.44257 * 24 23 19 27 27 H 1.08999 * 109.47218 * 59.99939 * 1 2 3 28 28 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46631 * 299.99987 * 1 2 3 30 30 H 1.08995 * 109.47286 * 240.00286 * 2 1 3 31 31 H 1.08999 * 109.47218 * 120.00060 * 2 1 3 32 32 H 1.08997 * 109.46533 * 59.99624 * 6 4 3 33 33 H 1.09000 * 109.47110 * 300.00134 * 6 4 3 34 34 H 1.08992 * 109.46937 * 30.00090 * 8 7 6 35 35 H 1.08997 * 109.46946 * 150.00090 * 8 7 6 36 36 H 0.97002 * 120.00492 * 179.97438 * 12 11 9 37 37 H 1.07994 * 120.52043 * 359.97438 * 18 17 7 38 38 H 0.96993 * 119.99726 * 0.02562 * 21 20 19 39 39 H 0.96998 * 119.99564 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.41534 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9207 2.9375 -0.0012 7 7 5.3836 2.8609 -0.0023 8 6 6.1161 2.8227 1.2660 9 6 6.4416 4.2285 1.7005 10 1 6.1333 5.0666 1.0931 11 6 7.1330 4.4447 2.8737 12 7 7.4166 5.6715 3.2532 13 14 7.6655 2.9953 3.9247 14 1 9.0167 2.5473 3.5020 15 1 7.7041 3.4059 5.3514 16 1 6.6992 1.8802 3.7565 17 6 6.0769 2.8243 -1.2067 18 6 7.4563 2.6466 -1.2012 19 6 8.1381 2.6127 -2.4182 20 6 9.6073 2.4261 -2.4616 21 7 10.2481 2.3966 -3.6470 22 8 10.2346 2.2998 -1.4286 23 6 7.3975 2.7594 -3.5967 24 6 6.0302 2.9372 -3.5147 25 17 5.1037 3.1281 -4.9704 26 7 5.4170 2.9590 -2.3459 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5850 3.4698 0.8888 33 1 3.5844 3.4694 -0.8912 34 1 5.5016 2.3405 2.0260 35 1 7.0402 2.2598 1.1350 36 1 7.9026 5.8238 4.0788 37 1 7.9915 2.5375 -0.2696 38 1 9.7475 2.4978 -4.4716 39 1 11.2100 2.2748 -3.6754 40 1 7.8897 2.7390 -4.5579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = -100.916122 kcal Electronic energy + Delta-G solvation = -27433.537334 eV Core-core repulsion = 23273.982994 eV Total energy + Delta-G solvation = -4159.554340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95078 -41.38677 -40.16892 -38.37570 -37.64473 -37.07362 -35.13158 -34.70387 -33.50087 -32.78541 -31.54391 -30.84042 -28.06398 -25.91200 -25.11491 -24.17505 -22.98571 -22.42234 -21.23878 -19.50417 -19.28868 -18.70897 -18.57255 -17.98222 -17.60357 -17.19873 -16.99170 -16.75081 -16.31364 -16.18674 -16.00137 -15.60622 -15.29850 -15.17357 -14.92578 -14.52962 -14.43257 -13.79088 -13.58110 -13.49204 -13.25498 -13.04662 -12.85647 -12.71212 -12.51071 -12.48045 -12.34352 -12.20510 -11.80776 -11.65743 -11.59450 -11.53813 -11.21338 -10.86991 -10.79921 -10.76364 -10.58040 -8.68791 -8.35877 -6.42139 -0.43422 0.02609 0.62625 1.14041 1.30991 1.35940 1.40679 1.44328 1.74394 2.07050 2.27606 2.31248 2.70949 2.97709 3.47881 3.74152 3.76314 3.81223 3.91281 3.98108 4.04209 4.09168 4.20165 4.32780 4.38242 4.56034 4.62352 4.73832 4.82978 4.92693 4.98305 5.12809 5.13614 5.34716 5.41841 5.61705 5.79481 6.17063 6.24131 6.30563 6.61050 6.69486 6.79294 7.18586 7.22700 8.79783 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.006236 B = 0.005875 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4488.707812 B = 4764.521173 C = 8150.892155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.452 3.548 5 O -0.534 6.534 6 C 0.138 3.862 7 N -0.573 5.573 8 C 0.238 3.762 9 C -0.537 4.537 10 H 0.044 0.956 11 C 0.029 3.971 12 N -0.933 5.933 13 Si 0.926 3.074 14 H -0.272 1.272 15 H -0.274 1.274 16 H -0.247 1.247 17 C 0.424 3.576 18 C -0.184 4.184 19 C -0.047 4.047 20 C 0.567 3.433 21 N -0.813 5.813 22 O -0.575 6.575 23 C -0.177 4.177 24 C 0.212 3.788 25 Cl -0.010 7.010 26 N -0.544 5.544 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.270 0.730 37 H 0.130 0.870 38 H 0.421 0.579 39 H 0.419 0.581 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 -9.589 -17.053 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.294 3.706 5 O -0.423 6.423 6 C 0.012 3.988 7 N -0.283 5.283 8 C 0.116 3.884 9 C -0.576 4.576 10 H 0.063 0.937 11 C -0.171 4.171 12 N -0.572 5.572 13 Si 0.750 3.250 14 H -0.197 1.197 15 H -0.199 1.199 16 H -0.171 1.171 17 C 0.189 3.811 18 C -0.211 4.211 19 C -0.058 4.058 20 C 0.352 3.648 21 N -0.379 5.379 22 O -0.454 6.454 23 C -0.201 4.201 24 C 0.047 3.953 25 Cl 0.019 6.981 26 N -0.265 5.265 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.148 0.852 38 H 0.254 0.746 39 H 0.252 0.748 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.333 -9.737 -16.098 20.192 hybrid contribution 1.348 -0.433 0.511 1.505 sum -5.985 -10.170 -15.587 19.550 Atomic orbital electron populations 1.21812 0.89856 1.04415 1.03880 1.23289 0.97413 0.79324 1.02125 1.86510 1.23407 1.33749 1.83726 1.24834 0.80913 0.93622 0.71261 1.90622 1.61264 1.43930 1.46480 1.20936 0.79862 0.89954 1.08026 1.46234 1.04219 1.74863 1.02938 1.19541 0.92462 0.95986 0.80403 1.21459 1.36904 0.92056 1.07183 0.93748 1.25582 0.95009 0.98030 0.98498 1.70001 1.40946 1.21899 1.24367 0.86028 0.79896 0.80379 0.78710 1.19725 1.19895 1.17066 1.17899 0.87904 0.89995 0.85308 1.21682 0.93554 1.05867 0.99962 1.19987 0.93816 0.98971 0.93005 1.18070 0.86464 0.75826 0.84481 1.43383 1.13011 1.74285 1.07242 1.90853 1.68405 1.50917 1.35242 1.21767 0.91759 1.07045 0.99512 1.21324 0.89318 0.97008 0.87649 1.98394 1.74864 1.95322 1.29555 1.66125 1.41479 1.21792 0.97099 0.91019 0.88069 0.91168 0.91765 0.91836 0.84975 0.84664 0.94028 0.95131 0.92100 0.85225 0.74606 0.74757 0.79282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.29 71.98 0.74 -1.42 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.36 -10.38 10.22 -51.39 -0.53 -10.90 16 4 C 0.45 15.67 8.03 71.24 0.57 16.24 16 5 O -0.53 -21.74 16.18 21.98 0.36 -21.39 16 6 C 0.14 4.81 6.06 85.64 0.52 5.33 16 7 N -0.57 -24.08 2.06 -712.69 -1.47 -25.54 16 8 C 0.24 11.25 4.07 85.63 0.35 11.60 16 9 C -0.54 -29.71 9.94 25.60 0.25 -29.46 16 10 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 11 C 0.03 1.63 5.47 84.66 0.46 2.10 16 12 N -0.93 -56.69 13.96 21.45 0.30 -56.39 16 13 Si 0.93 43.47 27.47 68.60 1.88 45.35 16 14 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 17 C 0.42 17.13 7.37 133.06 0.98 18.11 16 18 C -0.18 -7.48 8.84 22.79 0.20 -7.28 16 19 C -0.05 -1.47 5.90 -19.91 -0.12 -1.59 16 20 C 0.57 16.81 8.07 86.88 0.70 17.51 16 21 N -0.81 -13.03 8.83 -175.38 -1.55 -14.58 16 22 O -0.57 -23.15 17.28 -3.76 -0.07 -23.22 16 23 C -0.18 -4.25 9.37 22.66 0.21 -4.04 16 24 C 0.21 6.03 7.26 84.64 0.61 6.65 16 25 Cl -0.01 -0.22 29.10 -2.72 -0.08 -0.30 16 26 N -0.54 -19.19 9.02 -184.27 -1.66 -20.86 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 32 H 0.13 4.34 8.07 -2.39 -0.02 4.32 16 33 H 0.14 4.32 7.29 -2.39 -0.02 4.30 16 34 H 0.04 1.93 7.13 -2.39 -0.02 1.91 16 35 H 0.03 1.49 5.40 -2.39 -0.01 1.48 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.13 6.02 5.70 -2.91 -0.02 6.01 16 38 H 0.42 3.51 6.97 -92.71 -0.65 2.86 16 39 H 0.42 5.27 8.93 -92.71 -0.83 4.44 16 40 H 0.19 2.44 6.53 -2.91 -0.02 2.42 16 Total: -1.00 -78.09 364.81 2.72 -75.36 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.40 Total: 17.06 kcal Atomic # 6 Polarization: 29.46 SS G_CDS: 5.94 Total: 35.40 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -4.38 Total: -117.37 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -0.23 Total: -55.50 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -78.09 2.72 -75.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.553 kcal (2) G-P(sol) polarization free energy of solvation -78.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds