Wall clock time and date at job start Sat Apr 11 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46983 * 2 1 4 4 C 1.50699 * 109.46892 * 240.00635 * 2 1 3 5 5 H 1.08001 * 120.00065 * 239.99802 * 4 2 1 6 6 C 1.37878 * 120.00309 * 59.99779 * 4 2 1 7 7 N 1.31509 * 119.99775 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00049 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47196 * 89.99479 * 8 6 4 10 10 H 1.48502 * 109.46994 * 209.99764 * 8 6 4 11 11 H 1.48499 * 109.47197 * 329.99706 * 8 6 4 12 12 N 1.46897 * 109.47784 * 120.00329 * 2 1 3 13 13 C 1.46897 * 111.00296 * 200.25361 * 12 2 1 14 14 H 1.08998 * 109.46873 * 329.60215 * 13 12 2 15 15 C 1.52997 * 109.47455 * 89.60608 * 13 12 2 16 16 C 1.50700 * 109.46890 * 209.60773 * 13 12 2 17 17 O 1.21291 * 120.00341 * 359.97438 * 16 13 12 18 18 N 1.34780 * 119.99933 * 179.97438 * 16 13 12 19 19 C 1.39980 * 119.99976 * 183.88711 * 18 16 13 20 20 C 1.38849 * 120.07153 * 334.45779 * 19 18 16 21 21 C 1.38126 * 119.93808 * 179.79312 * 20 19 18 22 22 N 1.48015 * 119.95256 * 180.23099 * 21 20 19 23 23 O 1.21799 * 119.99567 * 180.23058 * 22 21 20 24 24 O 1.21797 * 120.00124 * 0.23621 * 22 21 20 25 25 C 1.38299 * 120.09133 * 0.46233 * 21 20 19 26 26 C 1.38259 * 120.14770 * 359.79266 * 25 21 20 27 27 C 1.38224 * 120.06162 * 359.97438 * 26 25 21 28 28 Cl 1.73598 * 120.04983 * 179.97438 * 27 26 25 29 29 H 1.08992 * 109.47774 * 64.91596 * 1 2 3 30 30 H 1.09006 * 109.47226 * 184.92260 * 1 2 3 31 31 H 1.09008 * 109.46953 * 304.91428 * 1 2 3 32 32 H 0.97008 * 119.99897 * 180.02562 * 7 6 4 33 33 H 1.00901 * 111.00105 * 76.29525 * 12 2 1 34 34 H 1.08995 * 109.47260 * 55.01705 * 15 13 12 35 35 H 1.09001 * 109.46956 * 175.02052 * 15 13 12 36 36 H 1.09003 * 109.46867 * 295.01404 * 15 13 12 37 37 H 0.96997 * 120.00151 * 3.88458 * 18 16 13 38 38 H 1.07993 * 120.03277 * 0.02562 * 20 19 18 39 39 H 1.07994 * 119.92170 * 179.76984 * 25 21 20 40 40 H 1.08000 * 119.96892 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4863 -0.1410 -5.1124 11 1 3.6291 -1.7580 -3.7125 12 7 2.0198 -0.6925 1.1993 13 6 3.4083 -0.3151 1.4951 14 1 3.9264 -0.0792 0.5656 15 6 3.4197 0.9106 2.4107 16 6 4.1051 -1.4615 2.1815 17 8 3.5040 -2.4914 2.4031 18 7 5.3962 -1.3423 2.5493 19 6 6.0670 -2.4340 3.1129 20 6 5.3525 -3.4230 3.7757 21 6 6.0168 -4.5012 4.3271 22 7 5.2549 -5.5582 5.0293 23 8 5.8403 -6.5072 5.5195 24 8 4.0427 -5.4791 5.1169 25 6 7.3933 -4.5921 4.2281 26 6 8.1089 -3.6068 3.5735 27 6 7.4500 -2.5275 3.0153 28 17 8.3490 -1.2902 2.1940 29 1 -0.3634 0.4356 -0.9306 30 1 -0.3634 -1.0239 0.0882 31 1 -0.3633 0.5882 0.8428 32 1 0.7079 1.1611 -3.4844 33 1 1.9299 -1.6927 1.1014 34 1 2.8266 0.7042 3.3015 35 1 4.4455 1.1372 2.7015 36 1 2.9953 1.7636 1.8812 37 1 5.8606 -0.5001 2.4235 38 1 4.2780 -3.3512 3.8569 39 1 7.9102 -5.4344 4.6635 40 1 9.1838 -3.6804 3.4983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195659498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:39 Heat of formation + Delta-G solvation = -10.498577 kcal Electronic energy + Delta-G solvation = -27178.993959 eV Core-core repulsion = 23023.360418 eV Total energy + Delta-G solvation = -4155.633541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37145 -41.08427 -39.22654 -37.20831 -36.70252 -36.16769 -35.27856 -33.16777 -32.09843 -31.13481 -29.90328 -27.27619 -26.80443 -25.15115 -24.71777 -23.30516 -22.43756 -20.46930 -19.96671 -19.72791 -18.78035 -17.70373 -17.64803 -17.29032 -17.03202 -16.52680 -16.03653 -15.36285 -14.89470 -14.72035 -14.46750 -14.36125 -13.78019 -13.44524 -13.09495 -12.93926 -12.56614 -12.33310 -12.19088 -12.09313 -11.76640 -11.61635 -11.43755 -11.37674 -11.32922 -11.24890 -11.16585 -11.05057 -10.86250 -10.33120 -10.24540 -10.10736 -9.84967 -9.60070 -9.25123 -8.82010 -8.49576 -7.52352 -6.10418 -4.24274 -0.54600 0.42748 0.96832 1.09047 1.36767 2.33625 2.52297 2.85522 3.20424 3.27895 3.30204 3.88056 4.18533 4.23968 4.31155 4.31876 4.60280 4.96466 5.01156 5.04021 5.17008 5.21484 5.40496 5.42589 5.57220 5.65358 5.88203 6.02501 6.17001 6.21119 6.43152 6.77840 6.89557 7.08150 7.16875 7.38158 7.48153 7.64162 7.82761 7.94782 8.03164 8.16163 8.49727 8.86821 9.44727 10.90032 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003186 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.723298 B = 8786.247185 C = 9524.153512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.208 3.792 3 H 0.036 0.964 4 C -0.552 4.552 5 H 0.052 0.948 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.673 5.673 13 C 0.075 3.925 14 H 0.088 0.912 15 C -0.135 4.135 16 C 0.518 3.482 17 O -0.501 6.501 18 N -0.669 5.669 19 C 0.176 3.824 20 C -0.068 4.068 21 C -0.019 4.019 22 N 0.027 4.973 23 O -0.160 6.160 24 O -0.142 6.142 25 C -0.073 4.073 26 C -0.085 4.085 27 C -0.034 4.034 28 Cl -0.035 7.035 29 H 0.085 0.915 30 H 0.025 0.975 31 H 0.015 0.985 32 H 0.263 0.737 33 H 0.346 0.654 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.420 0.580 38 H 0.194 0.806 39 H 0.162 0.838 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.872 -3.012 12.939 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.054 0.946 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.716 3.284 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.308 5.308 13 C -0.038 4.038 14 H 0.105 0.895 15 C -0.193 4.193 16 C 0.308 3.692 17 O -0.373 6.373 18 N -0.314 5.314 19 C 0.077 3.923 20 C -0.090 4.090 21 C -0.102 4.102 22 N 0.549 4.451 23 O -0.375 6.375 24 O -0.361 6.361 25 C -0.093 4.093 26 C -0.105 4.105 27 C -0.065 4.065 28 Cl -0.005 7.005 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.258 0.742 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.444 -2.474 12.904 21.049 hybrid contribution 1.040 -0.722 -1.740 2.151 sum 17.484 -3.196 11.164 20.989 Atomic orbital electron populations 1.21681 0.97296 0.98722 1.00812 1.19247 0.92743 0.94039 0.83881 0.94574 1.21846 1.32354 1.12876 0.91993 0.92971 1.24906 0.94696 0.94749 0.98915 1.69869 1.36005 1.22592 1.23645 0.86661 0.79281 0.79594 0.82859 1.20470 1.21076 1.20148 1.61110 1.13488 1.14031 1.42147 1.21452 0.92949 0.91376 0.98056 0.89493 1.21791 1.00412 0.97187 0.99902 1.21793 0.79943 0.90453 0.77036 1.90610 1.64271 1.30036 1.52418 1.43848 1.13306 1.13299 1.60993 1.17257 0.89048 0.90681 0.95349 1.21568 1.04734 0.90426 0.92229 1.21007 0.92111 0.92339 1.04756 1.43491 1.01419 1.01158 0.99075 1.94520 1.71584 1.23477 1.47926 1.94620 0.95496 1.83289 1.62738 1.20926 0.90788 0.99994 0.97601 1.20849 1.01327 0.91284 0.97056 1.21105 0.90801 0.93911 1.00635 1.98424 1.73724 1.51737 1.76654 0.89618 0.95577 0.96596 0.92737 0.83395 0.91637 0.93419 0.90683 0.74164 0.78904 0.82068 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.36 37.15 0.35 -2.68 16 2 C 0.21 4.94 2.42 -68.87 -0.17 4.77 16 3 H 0.04 0.91 7.54 -51.93 -0.39 0.52 16 4 C -0.55 -14.35 8.05 -34.44 -0.28 -14.63 16 5 H 0.05 1.38 7.80 -52.49 -0.41 0.97 16 6 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 7 N -0.88 -24.08 11.29 55.43 0.63 -23.45 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.67 -13.72 5.97 -102.18 -0.61 -14.33 16 13 C 0.08 1.25 2.82 -68.87 -0.19 1.05 16 14 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 15 C -0.13 -1.80 9.39 37.16 0.35 -1.45 16 16 C 0.52 7.91 7.07 -10.98 -0.08 7.83 16 17 O -0.50 -9.03 12.48 5.55 0.07 -8.96 16 18 N -0.67 -7.77 5.08 -9.83 -0.05 -7.82 16 19 C 0.18 1.99 6.45 -83.64 -0.54 1.45 16 20 C -0.07 -0.88 8.30 -39.40 -0.33 -1.20 16 21 C -0.02 -0.22 6.85 -79.97 -0.55 -0.77 16 22 N 0.03 0.38 4.45 33.95 0.15 0.53 16 23 O -0.16 -2.17 18.44 -29.46 -0.54 -2.71 16 24 O -0.14 -2.24 18.44 -29.46 -0.54 -2.78 16 25 C -0.07 -0.61 9.55 -39.55 -0.38 -0.99 16 26 C -0.09 -0.60 9.82 -39.58 -0.39 -0.99 16 27 C -0.03 -0.30 6.34 -39.32 -0.25 -0.55 16 28 Cl -0.03 -0.27 27.79 -51.86 -1.44 -1.72 16 29 H 0.09 2.23 5.95 -51.93 -0.31 1.92 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.35 7.53 7.09 -39.29 -0.28 7.25 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.47 7.35 -51.93 -0.38 0.09 16 36 H 0.07 1.08 7.78 -51.93 -0.40 0.67 16 37 H 0.42 3.85 7.02 -40.82 -0.29 3.57 16 38 H 0.19 2.93 5.07 -52.49 -0.27 2.66 16 39 H 0.16 1.01 7.60 -52.49 -0.40 0.62 16 40 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -29.35 357.97 -8.85 -38.20 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.34 Total: 8.42 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -2.54 Total: -6.39 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.12 Total: -45.07 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -1.02 Total: -14.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.44 Total: -1.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.35 -8.85 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195659498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.700 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds