Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46983 * 2 1 4 4 C 1.50699 * 109.46892 * 240.00635 * 2 1 3 5 5 H 1.08001 * 120.00065 * 239.99802 * 4 2 1 6 6 C 1.37878 * 120.00309 * 59.99779 * 4 2 1 7 7 N 1.31509 * 119.99775 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00049 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47196 * 89.99479 * 8 6 4 10 10 H 1.48502 * 109.46994 * 209.99764 * 8 6 4 11 11 H 1.48499 * 109.47197 * 329.99706 * 8 6 4 12 12 N 1.46897 * 109.47784 * 120.00329 * 2 1 3 13 13 C 1.46897 * 111.00296 * 200.25361 * 12 2 1 14 14 H 1.08998 * 109.46873 * 329.60215 * 13 12 2 15 15 C 1.52997 * 109.47455 * 89.60608 * 13 12 2 16 16 C 1.50700 * 109.46890 * 209.60773 * 13 12 2 17 17 O 1.21291 * 120.00341 * 359.97438 * 16 13 12 18 18 N 1.34780 * 119.99933 * 179.97438 * 16 13 12 19 19 C 1.39980 * 119.99976 * 183.88711 * 18 16 13 20 20 C 1.38849 * 120.07153 * 334.45779 * 19 18 16 21 21 C 1.38126 * 119.93808 * 179.79312 * 20 19 18 22 22 N 1.48015 * 119.95256 * 180.23099 * 21 20 19 23 23 O 1.21799 * 119.99567 * 180.23058 * 22 21 20 24 24 O 1.21797 * 120.00124 * 0.23621 * 22 21 20 25 25 C 1.38299 * 120.09133 * 0.46233 * 21 20 19 26 26 C 1.38259 * 120.14770 * 359.79266 * 25 21 20 27 27 C 1.38224 * 120.06162 * 359.97438 * 26 25 21 28 28 Cl 1.73598 * 120.04983 * 179.97438 * 27 26 25 29 29 H 1.08992 * 109.47774 * 64.91596 * 1 2 3 30 30 H 1.09006 * 109.47226 * 184.92260 * 1 2 3 31 31 H 1.09008 * 109.46953 * 304.91428 * 1 2 3 32 32 H 0.97008 * 119.99897 * 180.02562 * 7 6 4 33 33 H 1.00901 * 111.00105 * 76.29525 * 12 2 1 34 34 H 1.08995 * 109.47260 * 55.01705 * 15 13 12 35 35 H 1.09001 * 109.46956 * 175.02052 * 15 13 12 36 36 H 1.09003 * 109.46867 * 295.01404 * 15 13 12 37 37 H 0.96997 * 120.00151 * 3.88458 * 18 16 13 38 38 H 1.07993 * 120.03277 * 0.02562 * 20 19 18 39 39 H 1.07994 * 119.92170 * 179.76984 * 25 21 20 40 40 H 1.08000 * 119.96892 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1615 -4.4120 10 1 2.4863 -0.1410 -5.1124 11 1 3.6291 -1.7580 -3.7125 12 7 2.0198 -0.6925 1.1993 13 6 3.4083 -0.3151 1.4951 14 1 3.9264 -0.0792 0.5656 15 6 3.4197 0.9106 2.4107 16 6 4.1051 -1.4615 2.1815 17 8 3.5040 -2.4914 2.4031 18 7 5.3962 -1.3423 2.5493 19 6 6.0670 -2.4340 3.1129 20 6 5.3525 -3.4230 3.7757 21 6 6.0168 -4.5012 4.3271 22 7 5.2549 -5.5582 5.0293 23 8 5.8403 -6.5072 5.5195 24 8 4.0427 -5.4791 5.1169 25 6 7.3933 -4.5921 4.2281 26 6 8.1089 -3.6068 3.5735 27 6 7.4500 -2.5275 3.0153 28 17 8.3490 -1.2902 2.1940 29 1 -0.3634 0.4356 -0.9306 30 1 -0.3634 -1.0239 0.0882 31 1 -0.3633 0.5882 0.8428 32 1 0.7079 1.1611 -3.4844 33 1 1.9299 -1.6927 1.1014 34 1 2.8266 0.7042 3.3015 35 1 4.4455 1.1372 2.7015 36 1 2.9953 1.7636 1.8812 37 1 5.8606 -0.5001 2.4235 38 1 4.2780 -3.3512 3.8569 39 1 7.9102 -5.4344 4.6635 40 1 9.1838 -3.6804 3.4983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195659498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -28.606581 kcal Electronic energy + Delta-G solvation = -27179.779181 eV Core-core repulsion = 23023.360418 eV Total energy + Delta-G solvation = -4156.418763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.39073 -42.14167 -40.23067 -37.93843 -37.80411 -37.72007 -36.36353 -34.91917 -32.91798 -32.65781 -31.04804 -28.85145 -27.77701 -27.19692 -25.79343 -24.27097 -23.45072 -22.07166 -21.30240 -20.75774 -19.83542 -18.96000 -18.71291 -18.37097 -18.07209 -18.02591 -17.08051 -16.73643 -16.59792 -15.88672 -15.57356 -15.29948 -15.01837 -14.75456 -14.19446 -14.13400 -13.82030 -13.70445 -13.37138 -13.13266 -13.07074 -12.97820 -12.83224 -12.79573 -12.55055 -12.45082 -12.36966 -12.34710 -12.26081 -12.13591 -12.07171 -11.94754 -11.20319 -10.93551 -10.54003 -10.52967 -9.72493 -9.24522 -8.11311 -6.33112 -1.47771 -0.37714 0.01991 0.18128 0.61181 1.20919 1.34735 1.38263 1.45356 1.52028 2.00232 2.36475 3.09345 3.11080 3.28009 3.39193 3.52356 3.59100 3.63387 4.14983 4.15845 4.31628 4.36889 4.45758 4.65622 4.71897 4.79484 4.84816 4.93855 5.01715 5.14175 5.19879 5.24632 5.33213 5.42706 5.61707 5.90211 6.01883 6.09148 6.27642 6.38344 6.64056 6.73988 6.89061 7.38849 8.86309 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.003186 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.723298 B = 8786.247185 C = 9524.153512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.216 3.784 3 H 0.021 0.979 4 C -0.562 4.562 5 H 0.042 0.958 6 C 0.028 3.972 7 N -0.906 5.906 8 Si 0.946 3.054 9 H -0.280 1.280 10 H -0.278 1.278 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.072 3.928 14 H 0.077 0.923 15 C -0.128 4.128 16 C 0.523 3.477 17 O -0.535 6.535 18 N -0.653 5.653 19 C 0.157 3.843 20 C -0.087 4.087 21 C -0.035 4.035 22 N 0.029 4.971 23 O -0.126 6.126 24 O -0.216 6.216 25 C -0.051 4.051 26 C -0.066 4.066 27 C -0.022 4.022 28 Cl -0.018 7.018 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.335 0.665 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.432 0.568 38 H 0.162 0.838 39 H 0.193 0.807 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.825 -3.255 13.185 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 H 0.039 0.961 4 C -0.602 4.602 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.203 1.203 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.042 4.042 14 H 0.094 0.906 15 C -0.186 4.186 16 C 0.312 3.688 17 O -0.410 6.410 18 N -0.300 5.300 19 C 0.059 3.941 20 C -0.109 4.109 21 C -0.119 4.119 22 N 0.546 4.454 23 O -0.354 6.354 24 O -0.418 6.418 25 C -0.071 4.071 26 C -0.085 4.085 27 C -0.052 4.052 28 Cl 0.011 6.989 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.273 0.727 38 H 0.180 0.820 39 H 0.210 0.790 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 20.303 -2.635 13.150 24.333 hybrid contribution 0.066 -0.683 -1.762 1.891 sum 20.369 -3.318 11.388 23.571 Atomic orbital electron populations 1.21563 0.97644 0.98404 1.00211 1.19021 0.92522 0.93217 0.84490 0.96097 1.22061 1.32256 1.12656 0.93180 0.93926 1.25564 0.94931 0.95414 1.01408 1.69969 1.36703 1.23542 1.24254 0.85756 0.78654 0.78553 0.79846 1.20605 1.20311 1.19865 1.61031 1.16451 1.12985 1.40175 1.21530 0.90920 0.93174 0.98556 0.90564 1.21762 1.02997 0.95050 0.98760 1.21423 0.81039 0.89393 0.76960 1.90629 1.65409 1.31036 1.53947 1.43477 1.12041 1.14187 1.60280 1.17270 0.90072 0.90404 0.96340 1.21289 1.03677 0.91934 0.93997 1.21147 0.93183 0.91689 1.05834 1.43805 1.01309 1.01490 0.98819 1.94458 1.71173 1.23461 1.46278 1.94644 0.96662 1.84589 1.65887 1.21383 0.88938 1.00797 0.96006 1.21370 1.03158 0.89318 0.94622 1.21255 0.89745 0.94557 0.99656 1.98443 1.72998 1.51189 1.76240 0.91773 0.96020 0.95163 0.92616 0.84574 0.91877 0.89314 0.91690 0.72713 0.82045 0.79021 0.77710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 9.36 71.98 0.67 -5.19 16 2 C 0.22 10.51 2.42 44.17 0.11 10.62 16 3 H 0.02 1.09 7.54 -2.39 -0.02 1.07 16 4 C -0.56 -29.86 8.05 25.60 0.21 -29.65 16 5 H 0.04 2.30 7.80 -2.91 -0.02 2.28 16 6 C 0.03 1.48 5.29 84.66 0.45 1.93 16 7 N -0.91 -50.01 11.29 21.45 0.24 -49.76 16 8 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.67 -28.39 5.97 -477.19 -2.85 -31.23 16 13 C 0.07 2.41 2.82 44.17 0.12 2.53 16 14 H 0.08 2.74 7.42 -2.39 -0.02 2.72 16 15 C -0.13 -3.34 9.39 71.98 0.68 -2.66 16 16 C 0.52 16.28 7.07 87.66 0.62 16.90 16 17 O -0.53 -20.40 12.48 -3.06 -0.04 -20.44 16 18 N -0.65 -14.65 5.08 -303.41 -1.54 -16.19 16 19 C 0.16 3.37 6.45 38.16 0.25 3.62 16 20 C -0.09 -2.28 8.30 22.39 0.19 -2.10 16 21 C -0.03 -0.79 6.85 36.36 0.25 -0.54 16 22 N 0.03 0.80 4.45 -46.49 -0.21 0.59 16 23 O -0.13 -3.23 18.44 18.89 0.35 -2.88 16 24 O -0.22 -7.35 18.44 18.89 0.35 -7.00 16 25 C -0.05 -0.66 9.55 22.29 0.21 -0.45 16 26 C -0.07 -0.61 9.82 22.27 0.22 -0.39 16 27 C -0.02 -0.32 6.34 22.44 0.14 -0.18 16 28 Cl -0.02 -0.22 27.79 -2.72 -0.08 -0.30 16 29 H 0.06 3.42 5.95 -2.39 -0.01 3.40 16 30 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.03 1.33 8.14 -2.38 -0.02 1.32 16 32 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 33 H 0.34 15.30 7.09 -89.69 -0.64 14.66 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 1.56 7.35 -2.39 -0.02 1.54 16 36 H 0.06 1.84 7.78 -2.39 -0.02 1.83 16 37 H 0.43 7.13 7.02 -92.71 -0.65 6.48 16 38 H 0.16 5.37 5.07 -2.91 -0.01 5.35 16 39 H 0.19 1.38 7.60 -2.91 -0.02 1.36 16 40 H 0.21 0.18 8.06 -2.91 -0.02 0.16 16 Total: -1.00 -67.16 357.97 2.20 -64.96 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.16 Total: 23.28 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 4.11 Total: -5.57 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -4.36 Total: -96.59 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: 0.66 Total: -30.33 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.08 Total: -0.30 kcal Total: -67.16 2.20 -64.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195659498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.358 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds