Wall clock time and date at job start Sat Apr 11 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35753 * 116.99931 * 2 1 4 4 C 1.38852 * 119.60726 * 179.73015 * 3 2 1 5 5 C 1.38385 * 119.21387 * 179.79202 * 4 3 2 6 6 C 1.39282 * 118.43914 * 0.47283 * 5 4 3 7 7 N 1.40243 * 120.42581 * 179.76986 * 6 5 4 8 8 C 1.34780 * 120.00260 * 24.52233 * 7 6 5 9 9 O 1.21588 * 119.99783 * 5.70667 * 8 7 6 10 10 N 1.34777 * 120.00067 * 185.70734 * 8 7 6 11 11 C 1.47019 * 125.64844 * 0.02562 * 10 8 7 12 12 C 1.54322 * 107.27276 * 181.02361 * 11 10 8 13 13 C 1.55163 * 102.94053 * 22.19170 * 12 11 10 14 14 O 1.42903 * 111.00422 * 82.57410 * 13 12 11 15 15 C 1.50700 * 111.00248 * 206.38642 * 13 12 11 16 16 H 1.07994 * 120.00049 * 359.97438 * 15 13 12 17 17 C 1.37884 * 119.99591 * 180.02562 * 15 13 12 18 18 N 1.31510 * 120.00056 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99668 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47050 * 90.00045 * 19 17 15 21 21 H 1.48501 * 109.46891 * 210.00122 * 19 17 15 22 22 H 1.48502 * 109.46816 * 329.99782 * 19 17 15 23 23 C 1.47421 * 125.64866 * 179.71500 * 10 8 7 24 24 C 1.38800 * 119.14338 * 359.74625 * 6 5 4 25 25 Cl 1.73609 * 119.64218 * 180.02562 * 24 6 5 26 26 N 1.32026 * 120.71129 * 0.02562 * 24 6 5 27 27 H 1.08995 * 109.47309 * 59.99718 * 1 2 3 28 28 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47027 * 299.99897 * 1 2 3 30 30 H 1.08001 * 120.39130 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.78246 * 180.19340 * 5 4 3 32 32 H 0.97004 * 119.99751 * 204.51843 * 7 6 5 33 33 H 1.09001 * 109.88557 * 300.44323 * 11 10 8 34 34 H 1.08998 * 109.88548 * 61.60446 * 11 10 8 35 35 H 1.09004 * 110.72391 * 140.55373 * 12 11 10 36 36 H 1.09002 * 110.72258 * 263.65531 * 12 11 10 37 37 H 0.96693 * 113.99948 * 179.97438 * 14 13 12 38 38 H 0.96997 * 119.99798 * 180.02562 * 18 17 15 39 39 H 1.08998 * 110.36864 * 274.75271 * 23 10 8 40 40 H 1.09004 * 110.36282 * 37.07121 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.4324 1.2728 0.0057 5 6 4.0522 2.5101 0.0013 6 6 3.2542 3.6516 0.0013 7 7 3.8385 4.9266 0.0018 8 6 5.0847 5.0970 -0.4823 9 8 5.6627 4.1685 -1.0136 10 7 5.6903 6.2965 -0.3774 11 6 5.1097 7.4984 0.2388 12 6 6.1506 8.6299 0.1057 13 6 7.0317 8.1539 -1.0794 14 8 6.4296 8.4877 -2.3317 15 6 8.4225 8.7260 -0.9825 16 1 8.6832 9.3750 -0.1596 17 6 9.3617 8.4217 -1.9449 18 7 9.0437 7.6325 -2.9477 19 14 11.0859 9.1303 -1.8244 20 1 11.9478 8.2055 -1.0453 21 1 11.6479 9.2999 -3.1885 22 1 11.0326 10.4490 -1.1436 23 6 7.0469 6.6189 -0.8559 24 6 1.8733 3.5111 0.0004 25 17 0.8663 4.9253 -0.0002 26 7 1.3174 2.3136 0.0000 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0206 0.3670 0.0097 31 1 5.1293 2.5887 0.0024 32 1 3.3456 5.6858 0.3504 33 1 4.1925 7.7754 -0.2810 34 1 4.8991 7.3104 1.2916 35 1 5.6638 9.5759 -0.1313 36 1 6.7415 8.7196 1.0173 37 1 6.9443 8.2104 -3.1019 38 1 9.7046 7.4182 -3.6246 39 1 7.7884 6.3499 -0.1037 40 1 7.2514 6.1015 -1.7933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310397125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:05 Heat of formation + Delta-G solvation = -69.501777 kcal Electronic energy + Delta-G solvation = -27338.106616 eV Core-core repulsion = 23179.914504 eV Total energy + Delta-G solvation = -4158.192112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12969 -39.93755 -38.34248 -37.41441 -36.70475 -34.72733 -34.41544 -32.37551 -32.20943 -30.57325 -29.33462 -27.94076 -27.30548 -25.21399 -23.83204 -23.46073 -22.43592 -19.84333 -19.76832 -18.77341 -18.27832 -17.30695 -17.24271 -16.90123 -16.26840 -15.60466 -15.23943 -15.16294 -14.81695 -14.60134 -14.40747 -14.26719 -13.70155 -13.31048 -13.20395 -13.04647 -12.89467 -12.29532 -12.17172 -12.14848 -11.69788 -11.68566 -11.48435 -11.34935 -11.10060 -10.88931 -10.69969 -10.59687 -10.55073 -10.26236 -10.22246 -9.86291 -9.52818 -9.45728 -8.75312 -8.50097 -8.12795 -7.76964 -6.35452 -4.45230 0.74750 1.06023 1.55317 2.62162 2.95835 3.16737 3.23070 3.24929 3.27269 3.63272 4.06382 4.21910 4.23990 4.60387 4.89014 4.92427 5.00221 5.10396 5.11519 5.27753 5.36417 5.51712 5.53908 5.66148 5.77058 5.91466 5.97020 6.08469 6.40151 6.50163 6.59889 6.71913 6.75324 6.95879 7.05459 7.21431 7.33689 7.41610 7.67968 7.92061 8.18129 8.58157 8.73461 9.24807 9.39538 10.71788 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.002658 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.533790 B =10533.471199 C =11350.405779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.308 3.692 4 C -0.157 4.157 5 C -0.044 4.044 6 C 0.125 3.875 7 N -0.678 5.678 8 C 0.716 3.284 9 O -0.578 6.578 10 N -0.616 5.616 11 C 0.099 3.901 12 C -0.116 4.116 13 C 0.250 3.750 14 O -0.583 6.583 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.894 5.894 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.109 3.891 24 C 0.168 3.832 25 Cl -0.028 7.028 26 N -0.514 5.514 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.153 0.847 31 H 0.178 0.822 32 H 0.409 0.591 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.387 0.613 38 H 0.272 0.728 39 H 0.063 0.937 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.073 -9.171 7.790 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.212 6.212 3 C 0.127 3.873 4 C -0.178 4.178 5 C -0.072 4.072 6 C 0.023 3.977 7 N -0.326 5.326 8 C 0.419 3.581 9 O -0.456 6.456 10 N -0.351 5.351 11 C -0.025 4.025 12 C -0.154 4.154 13 C 0.209 3.791 14 O -0.394 6.394 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.533 5.533 19 Si 0.733 3.267 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.013 4.013 24 C 0.002 3.998 25 Cl 0.001 6.999 26 N -0.240 5.240 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.195 0.805 32 H 0.246 0.754 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.875 -9.857 7.612 19.400 hybrid contribution 1.425 0.780 -0.210 1.638 sum -13.450 -9.076 7.402 17.834 Atomic orbital electron populations 1.22858 0.77264 1.02909 1.02540 1.86266 1.22842 1.23760 1.88356 1.19486 0.89111 0.83514 0.95142 1.21147 0.91445 0.99585 1.05644 1.21864 1.02764 0.88661 0.93882 1.17932 0.89803 0.86599 1.03317 1.42723 1.16475 1.08105 1.65261 1.15449 0.80083 0.83239 0.79374 1.90850 1.65173 1.40076 1.49534 1.47975 1.18864 1.07845 1.60451 1.22062 0.97877 0.86404 0.96113 1.22608 0.96506 0.96562 0.99686 1.19631 0.90347 0.87440 0.81705 1.86066 1.52521 1.83758 1.17035 1.21479 0.95074 1.30658 1.10443 0.91374 1.25090 0.99501 0.93891 0.94749 1.69555 1.35857 1.35327 1.12561 0.86373 0.83258 0.79520 0.77599 1.20371 1.20957 1.19666 1.23364 0.78084 1.00187 0.99628 1.20712 0.86510 0.88076 1.04484 1.98401 1.69930 1.34978 1.96635 1.66380 1.40696 0.97221 1.19653 0.92259 0.88618 0.92313 0.82977 0.80504 0.75419 0.92233 0.92663 0.90523 0.90268 0.76069 0.91778 0.91905 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.47 10.48 -18.97 -0.20 -3.67 16 3 C 0.31 3.95 7.49 -17.15 -0.13 3.82 16 4 C -0.16 -1.92 10.03 -39.30 -0.39 -2.31 16 5 C -0.04 -0.62 8.82 -39.14 -0.35 -0.96 16 6 C 0.12 1.82 6.45 -83.41 -0.54 1.28 16 7 N -0.68 -10.21 5.16 -14.06 -0.07 -10.28 16 8 C 0.72 13.46 8.31 -86.92 -0.72 12.74 16 9 O -0.58 -12.41 13.80 5.29 0.07 -12.34 16 10 N -0.62 -11.85 3.32 -176.10 -0.59 -12.43 16 11 C 0.10 1.59 6.16 -3.07 -0.02 1.57 16 12 C -0.12 -2.13 6.12 -24.89 -0.15 -2.29 16 13 C 0.25 5.73 0.89 -89.50 -0.08 5.65 16 14 O -0.58 -14.43 13.19 -35.23 -0.46 -14.90 16 15 C -0.54 -13.35 8.25 -34.44 -0.28 -13.63 16 16 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -23.03 10.72 55.43 0.59 -22.44 16 19 Si 0.91 19.68 29.54 -169.99 -5.02 14.66 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 C 0.11 2.46 5.65 -2.41 -0.01 2.44 16 24 C 0.17 2.30 7.29 -17.26 -0.13 2.18 16 25 Cl -0.03 -0.33 27.93 -51.86 -1.45 -1.78 16 26 N -0.51 -6.95 9.18 -10.30 -0.09 -7.05 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.18 2.71 5.89 -52.49 -0.31 2.40 16 32 H 0.41 5.32 6.75 -40.82 -0.28 5.04 16 33 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 37 H 0.39 9.99 6.93 45.56 0.32 10.31 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16 40 H 0.08 2.17 7.64 -51.93 -0.40 1.77 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -28.31 351.93 -7.76 -36.07 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -4.00 Total: 15.30 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -1.85 Total: 13.57 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.16 Total: -52.20 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.59 Total: -30.91 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.45 Total: -1.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.31 -7.76 -36.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310397125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.430 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds