Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47276 * 238.72499 * 3 2 1 5 5 C 1.36937 * 120.00185 * 273.37971 * 4 3 2 6 6 H 1.07993 * 120.00048 * 186.54450 * 5 4 3 7 7 C 1.38818 * 119.99688 * 6.54090 * 5 4 3 8 8 N 1.31618 * 120.00231 * 25.63012 * 7 5 4 9 9 Si 1.86799 * 119.99749 * 205.62266 * 7 5 4 10 10 H 1.48500 * 109.47264 * 60.00282 * 9 7 5 11 11 H 1.48506 * 109.46874 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47411 * 300.00223 * 9 7 5 13 13 S 1.65599 * 120.00010 * 93.37352 * 4 3 2 14 14 O 1.42102 * 104.27801 * 153.93037 * 13 4 3 15 15 O 1.42097 * 104.27581 * 26.07462 * 13 4 3 16 16 C 1.81400 * 104.44995 * 270.00152 * 13 4 3 17 17 C 1.52996 * 109.47298 * 179.97438 * 16 13 4 18 18 H 1.09009 * 109.47281 * 60.00021 * 17 16 13 19 19 O 1.42905 * 109.47406 * 300.00443 * 17 16 13 20 20 C 1.42903 * 114.00054 * 149.99590 * 19 17 16 21 21 C 1.50702 * 109.47653 * 180.02562 * 17 16 13 22 22 C 1.38239 * 119.97150 * 84.72321 * 21 17 16 23 23 C 1.38204 * 120.02242 * 179.77165 * 22 21 17 24 24 C 1.38456 * 119.97318 * 0.50827 * 23 22 21 25 25 F 1.35100 * 120.02705 * 179.76982 * 24 23 22 26 26 C 1.38459 * 119.95074 * 359.74634 * 24 23 22 27 27 C 1.38194 * 119.97080 * 359.97438 * 26 24 23 28 28 H 4.40642 * 5.51562 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47124 * 118.72700 * 3 2 1 30 30 H 1.08994 * 109.47599 * 358.72395 * 3 2 1 31 31 H 0.96993 * 120.00303 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46891 * 60.00351 * 16 13 4 33 33 H 1.08994 * 109.47372 * 300.00333 * 16 13 4 34 34 H 1.09000 * 109.47001 * 180.02562 * 20 19 17 35 35 H 1.09001 * 109.47047 * 299.99719 * 20 19 17 36 36 H 1.09000 * 109.47085 * 60.00313 * 20 19 17 37 37 H 1.08000 * 119.99397 * 0.02664 * 22 21 17 38 38 H 1.08001 * 120.01290 * 180.25818 * 23 22 21 39 39 H 1.07994 * 120.01705 * 179.97438 * 26 24 23 40 40 H 1.08004 * 119.98983 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7179 1.1805 5 6 3.2958 2.0771 1.1376 6 1 3.7539 2.5928 1.9685 7 6 2.8708 2.7918 0.0260 8 7 1.9044 2.3177 -0.7312 9 14 3.6706 4.4266 -0.3949 10 1 5.1217 4.2208 -0.6340 11 1 3.0411 4.9851 -1.6185 12 1 3.4844 5.3739 0.7335 13 16 3.4900 -0.1148 2.5669 14 8 4.4573 0.6936 3.2228 15 8 3.8127 -1.4234 2.1166 16 6 1.9339 -0.1281 3.4991 17 6 2.1353 -0.8788 4.8170 18 1 2.9066 -0.3808 5.4047 19 8 2.5381 -2.2223 4.5433 20 6 3.3729 -2.7957 5.5515 21 6 0.8424 -0.8904 5.5912 22 6 -0.1093 -1.8589 5.3318 23 6 -1.2933 -1.8734 6.0444 24 6 -1.5305 -0.9111 7.0113 25 9 -2.6895 -0.9215 7.7053 26 6 -0.5788 0.0616 7.2666 27 6 0.6068 0.0706 6.5567 28 1 -1.0501 0.0001 -0.0002 29 1 3.0091 0.4948 -0.9012 30 1 3.0098 -1.0265 0.0229 31 1 1.6072 2.8172 -1.5077 32 1 1.1628 -0.6265 2.9118 33 1 1.6264 0.8966 3.7075 34 1 3.6353 -3.8153 5.2693 35 1 4.2813 -2.2017 5.6521 36 1 2.8391 -2.8073 6.5018 37 1 0.0742 -2.6070 4.5747 38 1 -2.0349 -2.6326 5.8445 39 1 -0.7629 0.8129 8.0202 40 1 1.3496 0.8289 6.7559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334971237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -57.502714 kcal Electronic energy + Delta-G solvation = -27947.190083 eV Core-core repulsion = 23771.642035 eV Total energy + Delta-G solvation = -4175.548049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.95567 -39.59980 -37.45912 -36.35887 -35.70359 -34.50965 -32.47746 -32.06793 -31.17900 -31.17168 -29.05332 -26.61817 -26.33781 -24.04411 -23.59812 -23.04437 -21.01427 -18.50071 -17.92473 -17.80147 -17.09118 -16.93119 -16.55599 -16.21507 -15.68242 -15.60239 -15.30861 -14.81518 -14.59757 -14.50308 -14.29522 -13.68323 -13.56786 -13.46127 -13.30021 -13.22281 -12.54917 -12.40905 -12.24657 -11.91170 -11.88025 -11.56035 -11.26496 -11.19089 -10.96924 -10.85078 -10.77359 -10.71918 -10.49122 -10.27610 -9.95339 -9.76574 -9.41964 -9.25777 -9.15994 -8.88810 -8.58267 -8.30168 -6.64051 -3.97820 1.04672 1.18708 1.52667 3.06745 3.12189 3.18901 3.50283 3.64055 3.80959 3.97291 4.12678 4.19279 4.42356 4.61919 4.67603 4.72040 4.81777 5.04946 5.11283 5.27174 5.33549 5.37634 5.46217 5.50497 5.51729 5.56382 5.79036 5.84975 5.92842 6.05112 6.07993 6.19702 6.30955 6.44175 6.47822 6.72855 6.82931 6.95823 7.11255 7.21940 7.26232 8.12924 8.53295 8.85534 8.95963 10.27520 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.003837 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.337816 B = 7295.028610 C = 7924.683361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.111 4.111 3 C 0.233 3.767 4 N -0.797 5.797 5 C -0.246 4.246 6 H 0.123 0.877 7 C 0.028 3.972 8 N -0.817 5.817 9 Si 0.930 3.070 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.268 1.268 13 S 2.478 3.522 14 O -0.987 6.987 15 O -0.980 6.980 16 C -0.659 4.659 17 C 0.146 3.854 18 H 0.076 0.924 19 O -0.369 6.369 20 C 0.025 3.975 21 C -0.105 4.105 22 C -0.066 4.066 23 C -0.155 4.155 24 C 0.090 3.910 25 F -0.144 7.144 26 C -0.154 4.154 27 C -0.086 4.086 28 H 0.197 0.803 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.277 0.723 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 -4.306 8.771 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.114 4.114 3 C 0.107 3.893 4 N -0.618 5.618 5 C -0.393 4.393 6 H 0.140 0.860 7 C -0.184 4.184 8 N -0.455 5.455 9 Si 0.755 3.245 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.193 1.193 13 S 2.575 3.425 14 O -0.976 6.976 15 O -0.970 6.970 16 C -0.776 4.776 17 C 0.087 3.913 18 H 0.094 0.906 19 O -0.288 6.288 20 C -0.071 4.071 21 C -0.106 4.106 22 C -0.084 4.084 23 C -0.174 4.174 24 C 0.071 3.929 25 F -0.123 7.123 26 C -0.173 4.173 27 C -0.104 4.104 28 H 0.214 0.786 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.147 -4.985 8.921 10.692 hybrid contribution -1.292 1.219 0.331 1.807 sum -4.439 -3.766 9.252 10.931 Atomic orbital electron populations 1.24225 0.95311 1.06677 1.02571 1.23447 0.94590 0.95024 0.98291 1.18471 0.83758 0.95978 0.91082 1.55152 1.71536 1.15884 1.19249 1.20078 1.31270 0.82800 1.05189 0.85998 1.25599 0.95169 1.00065 0.97608 1.70225 1.20874 1.38644 1.15777 0.85922 0.79945 0.80296 0.78364 1.19146 1.20613 1.19326 1.13978 0.80304 0.74121 0.74091 1.93353 1.59330 1.68639 1.76282 1.93360 1.84417 1.40364 1.78836 1.31398 1.32356 1.05815 1.08038 1.20534 0.92660 0.83766 0.94350 0.90634 1.88075 1.68327 1.27046 1.45305 1.22877 0.93485 0.99486 0.91274 1.20501 0.97689 0.95960 0.96474 1.20918 0.91418 0.98028 0.98043 1.21156 0.99268 0.99683 0.97304 1.17734 0.82962 0.97921 0.94291 1.91479 1.46669 1.96282 1.77843 1.21063 0.94163 0.99483 1.02607 1.20926 0.96763 0.98114 0.94608 0.78621 0.86821 0.89710 0.91182 0.86339 0.85821 0.89098 0.93707 0.94068 0.84254 0.84792 0.84775 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.11 -2.44 11.24 -37.12 -0.42 -2.85 16 3 C 0.23 5.16 5.43 -6.83 -0.04 5.12 16 4 N -0.80 -18.58 2.81 -62.77 -0.18 -18.76 16 5 C -0.25 -5.88 9.42 -15.06 -0.14 -6.02 16 6 H 0.12 2.89 7.17 -52.49 -0.38 2.51 16 7 C 0.03 0.65 4.91 -17.43 -0.09 0.56 16 8 N -0.82 -18.99 8.98 55.49 0.50 -18.49 16 9 Si 0.93 18.05 29.62 -169.99 -5.04 13.01 16 10 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 11 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 13 S 2.48 55.89 5.18 -107.50 -0.56 55.33 16 14 O -0.99 -24.32 16.77 -57.54 -0.96 -25.28 16 15 O -0.98 -23.68 15.88 -61.90 -0.98 -24.66 16 16 C -0.66 -12.64 5.88 37.16 0.22 -12.42 16 17 C 0.15 2.46 2.37 -27.88 -0.07 2.40 16 18 H 0.08 1.19 7.70 -51.92 -0.40 0.80 16 19 O -0.37 -6.39 8.54 -42.01 -0.36 -6.75 16 20 C 0.03 0.34 10.81 101.05 1.09 1.44 16 21 C -0.11 -1.56 4.96 -104.62 -0.52 -2.08 16 22 C -0.07 -0.93 9.35 -39.59 -0.37 -1.30 16 23 C -0.16 -1.98 10.03 -39.51 -0.40 -2.37 16 24 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 25 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 26 C -0.15 -1.89 10.03 -39.52 -0.40 -2.29 16 27 C -0.09 -1.13 9.68 -39.60 -0.38 -1.51 16 28 H 0.20 3.27 7.80 -54.08 -0.42 2.85 16 29 H 0.11 2.55 6.43 -51.93 -0.33 2.21 16 30 H 0.09 1.78 6.84 -51.93 -0.36 1.43 16 31 H 0.28 6.12 8.31 -40.82 -0.34 5.78 16 32 H 0.12 2.30 8.14 -51.92 -0.42 1.88 16 33 H 0.12 2.28 8.14 -51.93 -0.42 1.86 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.14 1.93 7.63 -52.49 -0.40 1.53 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -29.05 363.74 -8.08 -37.12 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.80 Total: 10.16 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -1.22 Total: -25.32 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.32 Total: -37.25 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -2.31 Total: -56.69 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.04 Total: 13.01 kcal Atomic # 16 Polarization: 55.89 SS G_CDS: -0.56 Total: 55.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.05 -8.08 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334971237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.378 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds