Wall clock time and date at job start Sat Apr 11 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46835 * 255.41134 * 3 2 1 5 5 C 1.36943 * 119.99674 * 274.30470 * 4 3 2 6 6 H 1.08004 * 119.99582 * 184.51155 * 5 4 3 7 7 C 1.38813 * 120.00280 * 4.51555 * 5 4 3 8 8 N 1.31615 * 119.99645 * 27.44297 * 7 5 4 9 9 Si 1.86791 * 120.00005 * 207.44175 * 7 5 4 10 10 H 1.48503 * 109.47428 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47308 * 120.00080 * 9 7 5 12 12 H 1.48501 * 109.47086 * 240.00024 * 9 7 5 13 13 S 1.65598 * 120.00282 * 94.31057 * 4 3 2 14 14 O 1.42094 * 104.27858 * 153.92211 * 13 4 3 15 15 O 1.42104 * 104.27700 * 26.06780 * 13 4 3 16 16 C 1.81403 * 104.44933 * 269.99910 * 13 4 3 17 17 C 1.52995 * 109.47043 * 186.68063 * 16 13 4 18 18 H 1.09008 * 109.47134 * 60.34307 * 17 16 13 19 19 O 1.42900 * 109.47194 * 180.34356 * 17 16 13 20 20 C 1.42905 * 113.99935 * 270.80386 * 19 17 16 21 21 C 1.50702 * 109.47352 * 300.34498 * 17 16 13 22 22 C 1.38241 * 119.97473 * 100.00123 * 21 17 16 23 23 C 1.38196 * 120.02314 * 180.02562 * 22 21 17 24 24 C 1.38465 * 119.97609 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.02546 * 179.97438 * 24 23 22 26 26 C 1.38460 * 119.94492 * 0.26045 * 24 23 22 27 27 C 1.38194 * 119.97499 * 359.46562 * 26 24 23 28 28 H 4.40638 * 5.51448 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.46801 * 135.41145 * 3 2 1 30 30 H 1.09002 * 109.46885 * 15.41339 * 3 2 1 31 31 H 0.97007 * 120.00137 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46983 * 66.68220 * 16 13 4 33 33 H 1.09002 * 109.46576 * 306.67916 * 16 13 4 34 34 H 1.08995 * 109.47274 * 64.69884 * 20 19 17 35 35 H 1.08993 * 109.47109 * 184.70577 * 20 19 17 36 36 H 1.09005 * 109.46948 * 304.70450 * 20 19 17 37 37 H 1.07994 * 119.98889 * 0.02562 * 22 21 17 38 38 H 1.08003 * 120.01533 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.00757 * 179.74646 * 26 24 23 40 40 H 1.08003 * 119.98883 * 180.30048 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3488 1.3367 5 6 3.2778 1.6634 1.6922 6 1 3.7059 1.9201 2.6500 7 6 2.8732 2.6661 0.8217 8 7 1.9096 2.4359 -0.0448 9 14 3.6962 4.3419 0.8801 10 1 4.7413 4.3437 1.9351 11 1 4.3199 4.6332 -0.4356 12 1 2.6812 5.3814 1.1877 13 16 3.5123 -0.8474 2.4177 14 8 4.4742 -0.2516 3.2772 15 8 3.8484 -1.9623 1.6032 16 6 1.9641 -1.1558 3.3114 17 6 2.2242 -2.1323 4.4601 18 1 2.9539 -1.7010 5.1455 19 8 1.0031 -2.3815 5.1592 20 6 0.7487 -1.4681 6.2284 21 6 2.7596 -3.4278 3.9066 22 6 4.1168 -3.6874 3.9464 23 6 4.6088 -4.8748 3.4387 24 6 3.7418 -5.8049 2.8906 25 9 4.2218 -6.9658 2.3935 26 6 2.3832 -5.5416 2.8469 27 6 1.8928 -4.3560 3.3603 28 1 -1.0501 0.0002 -0.0001 29 1 3.0090 0.7327 -0.7215 30 1 3.0098 -0.9899 -0.2731 31 1 1.6266 3.1367 -0.6530 32 1 1.2300 -1.5845 2.6292 33 1 1.5828 -0.2166 3.7122 34 1 0.6093 -0.4655 5.8243 35 1 -0.1519 -1.7738 6.7608 36 1 1.5948 -1.4685 6.9156 37 1 4.7928 -2.9621 4.3744 38 1 5.6692 -5.0777 3.4703 39 1 1.7065 -6.2645 2.4158 40 1 0.8326 -4.1525 3.3307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334971238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:25 Heat of formation + Delta-G solvation = -55.069076 kcal Electronic energy + Delta-G solvation = -28442.665488 eV Core-core repulsion = 24267.222970 eV Total energy + Delta-G solvation = -4175.442518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.75372 -39.41036 -37.43569 -36.41057 -35.76033 -34.58417 -32.44726 -32.12521 -31.21565 -30.97918 -28.70660 -26.67332 -26.61946 -24.05427 -23.43249 -22.83891 -20.93116 -18.55109 -17.96691 -17.61773 -17.22004 -16.61836 -16.51657 -16.26483 -15.54086 -15.46398 -15.35972 -14.81326 -14.55540 -14.38305 -14.30763 -13.62879 -13.46791 -13.36524 -13.28949 -13.16307 -12.84211 -12.40065 -12.14414 -11.95013 -11.70401 -11.55059 -11.31682 -11.04188 -10.97051 -10.83385 -10.78412 -10.66968 -10.51196 -10.31454 -9.93396 -9.77276 -9.44321 -9.26969 -8.90581 -8.88941 -8.44627 -8.36484 -6.70467 -4.00601 1.23443 1.43032 1.45277 3.01409 3.10631 3.18314 3.58360 3.66094 3.89638 3.93991 4.08904 4.38436 4.40301 4.55796 4.80433 4.85462 5.02764 5.04873 5.14755 5.32776 5.37125 5.42812 5.50030 5.51355 5.56848 5.60301 5.73321 6.00375 6.06127 6.14226 6.25776 6.26987 6.36207 6.49055 6.57136 6.68782 6.91324 7.03542 7.07161 7.17194 7.26222 8.07478 8.47960 8.82001 8.90576 10.21376 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.004197 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.160358 B = 6669.729546 C = 7031.468750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.113 4.113 3 C 0.230 3.770 4 N -0.793 5.793 5 C -0.243 4.243 6 H 0.123 0.877 7 C 0.028 3.972 8 N -0.813 5.813 9 Si 0.928 3.072 10 H -0.260 1.260 11 H -0.274 1.274 12 H -0.278 1.278 13 S 2.468 3.532 14 O -0.984 6.984 15 O -0.983 6.983 16 C -0.687 4.687 17 C 0.156 3.844 18 H 0.075 0.925 19 O -0.378 6.378 20 C 0.029 3.971 21 C -0.112 4.112 22 C -0.079 4.079 23 C -0.142 4.142 24 C 0.101 3.899 25 F -0.143 7.143 26 C -0.156 4.156 27 C -0.052 4.052 28 H 0.197 0.803 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.277 0.723 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 -6.546 5.344 8.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.116 4.116 3 C 0.105 3.895 4 N -0.615 5.615 5 C -0.391 4.391 6 H 0.141 0.859 7 C -0.185 4.185 8 N -0.451 5.451 9 Si 0.752 3.248 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.204 1.204 13 S 2.566 3.434 14 O -0.974 6.974 15 O -0.972 6.972 16 C -0.804 4.804 17 C 0.097 3.903 18 H 0.093 0.907 19 O -0.296 6.296 20 C -0.068 4.068 21 C -0.112 4.112 22 C -0.097 4.097 23 C -0.160 4.160 24 C 0.082 3.918 25 F -0.122 7.122 26 C -0.174 4.174 27 C -0.070 4.070 28 H 0.215 0.785 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.962 -7.389 5.404 9.205 hybrid contribution -0.872 1.150 0.115 1.448 sum -1.834 -6.239 5.520 8.529 Atomic orbital electron populations 1.24244 0.95328 1.07141 1.01864 1.23451 0.94600 0.94804 0.98738 1.18523 0.83797 1.00779 0.86425 1.55317 1.71282 1.17282 1.17593 1.20185 1.32222 0.80531 1.06127 0.85910 1.25609 0.95251 1.00481 0.97161 1.70269 1.21004 1.34570 1.19277 0.85829 0.79654 0.80026 0.79275 1.18345 1.19891 1.20414 1.14459 0.80555 0.74220 0.74175 1.93352 1.59718 1.75848 1.68447 1.93386 1.84268 1.53620 1.65929 1.31856 1.31806 1.05693 1.11007 1.20445 0.86884 0.90804 0.92122 0.90697 1.87879 1.40210 1.54386 1.47159 1.22798 1.00952 0.93787 0.89245 1.19878 0.93740 0.96528 1.01094 1.20895 0.94436 0.96532 0.97831 1.20943 1.00025 0.94003 1.01056 1.17692 0.92620 0.82834 0.98639 1.91470 1.88854 1.46417 1.85470 1.21080 0.93646 0.99279 1.03425 1.20751 1.00275 0.91768 0.94227 0.78543 0.86820 0.89650 0.91206 0.86569 0.86672 0.93668 0.89753 0.93957 0.84922 0.84556 0.84765 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.39 19.25 29.55 0.57 -4.82 16 2 C -0.11 -2.49 11.26 -37.12 -0.42 -2.90 16 3 C 0.23 5.10 5.44 -6.83 -0.04 5.06 16 4 N -0.79 -18.43 2.82 -62.77 -0.18 -18.60 16 5 C -0.24 -5.78 9.39 -15.06 -0.14 -5.93 16 6 H 0.12 2.91 7.21 -52.48 -0.38 2.53 16 7 C 0.03 0.64 4.90 -17.43 -0.09 0.55 16 8 N -0.81 -18.79 9.02 55.49 0.50 -18.29 16 9 Si 0.93 17.87 29.63 -169.99 -5.04 12.83 16 10 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 11 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 12 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 13 S 2.47 54.98 4.51 -107.50 -0.48 54.49 16 14 O -0.98 -23.84 16.78 -57.54 -0.97 -24.80 16 15 O -0.98 -22.90 14.74 -57.54 -0.85 -23.75 16 16 C -0.69 -13.36 5.99 37.16 0.22 -13.14 16 17 C 0.16 2.73 2.46 -27.88 -0.07 2.67 16 18 H 0.08 1.25 7.59 -51.92 -0.39 0.85 16 19 O -0.38 -6.13 9.67 -35.23 -0.34 -6.47 16 20 C 0.03 0.37 10.87 101.05 1.10 1.47 16 21 C -0.11 -1.95 3.87 -104.62 -0.41 -2.35 16 22 C -0.08 -1.33 8.06 -39.60 -0.32 -1.65 16 23 C -0.14 -2.22 10.03 -39.51 -0.40 -2.61 16 24 C 0.10 1.58 7.30 -39.42 -0.29 1.29 16 25 F -0.14 -2.16 17.27 2.25 0.04 -2.12 16 26 C -0.16 -2.32 10.03 -39.52 -0.40 -2.72 16 27 C -0.05 -0.84 9.35 -39.59 -0.37 -1.21 16 28 H 0.20 3.25 7.80 -54.09 -0.42 2.83 16 29 H 0.11 2.55 6.41 -51.93 -0.33 2.21 16 30 H 0.09 1.79 6.83 -51.93 -0.35 1.44 16 31 H 0.28 6.02 8.31 -40.82 -0.34 5.69 16 32 H 0.12 2.28 8.14 -51.93 -0.42 1.86 16 33 H 0.11 2.21 7.91 -51.92 -0.41 1.79 16 34 H 0.04 0.59 7.91 -51.93 -0.41 0.18 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.49 7.98 -51.93 -0.41 0.07 16 37 H 0.13 2.10 8.03 -52.49 -0.42 1.68 16 38 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.14 2.02 7.77 -52.48 -0.41 1.61 16 LS Contribution 360.12 15.07 5.43 5.43 Total: -1.00 -28.49 360.12 -7.70 -36.18 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -4.77 Total: 11.39 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -1.04 Total: -26.29 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.32 Total: -36.89 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -2.15 Total: -55.02 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.04 Total: 12.83 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.48 Total: 54.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.49 -7.70 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334971238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.886 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds