Wall clock time and date at job start Sat Apr 11 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00282 * 2 1 4 4 O 1.20830 * 119.99808 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00103 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47371 * 59.99785 * 5 3 2 7 7 C 1.52998 * 109.47118 * 299.99826 * 5 3 2 8 8 C 1.52994 * 109.47466 * 175.00006 * 7 5 3 9 9 F 1.39902 * 109.47572 * 180.02562 * 8 7 5 10 10 N 1.46493 * 109.47044 * 179.97438 * 5 3 2 11 11 C 1.34783 * 120.00266 * 204.99649 * 10 5 3 12 12 O 1.21554 * 119.99505 * 0.02562 * 11 10 5 13 13 C 1.47857 * 120.00551 * 180.02562 * 11 10 5 14 14 C 1.39674 * 120.09834 * 0.02598 * 13 11 10 15 15 C 1.38046 * 120.04015 * 179.97438 * 14 13 11 16 16 C 1.38176 * 120.23908 * 359.76355 * 15 14 13 17 17 C 1.39179 * 120.20513 * 0.51284 * 16 15 14 18 18 S 1.76194 * 120.02163 * 179.73865 * 17 16 15 19 19 C 1.76196 * 100.00182 * 265.25136 * 18 17 16 20 20 H 1.08000 * 120.00393 * 5.12593 * 19 18 17 21 21 C 1.38736 * 120.00006 * 185.12109 * 19 18 17 22 22 N 1.31616 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47166 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00071 * 23 21 19 26 26 H 1.48498 * 109.46876 * 239.99864 * 23 21 19 27 27 C 1.38875 * 119.95687 * 359.47003 * 17 16 15 28 28 H 1.08996 * 109.47336 * 59.99712 * 1 2 3 29 29 H 1.08997 * 109.47684 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46799 * 300.00313 * 1 2 3 31 31 H 1.09003 * 109.47342 * 295.00505 * 7 5 3 32 32 H 1.09003 * 109.47171 * 54.99883 * 7 5 3 33 33 H 1.09003 * 109.47248 * 300.00557 * 8 7 5 34 34 H 1.09003 * 109.47026 * 59.99788 * 8 7 5 35 35 H 0.97000 * 120.00523 * 25.00352 * 10 5 3 36 36 H 1.08002 * 119.98410 * 359.97438 * 14 13 11 37 37 H 1.07996 * 119.87866 * 180.02562 * 15 14 13 38 38 H 1.08006 * 119.89861 * 180.27092 * 16 15 14 39 39 H 0.97004 * 119.99833 * 179.97438 * 22 21 19 40 40 H 1.08000 * 120.12505 * 180.25503 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8908 7 6 4.1138 0.5810 1.2483 8 6 5.6422 0.5511 1.1865 9 9 6.1429 -0.0839 2.3282 10 7 3.9817 2.6796 -0.0011 11 6 5.1871 3.0258 -0.4948 12 8 5.9293 2.1724 -0.9402 13 6 5.6067 4.4436 -0.4949 14 6 4.7557 5.4259 0.0168 15 6 5.1488 6.7492 0.0167 16 6 6.3857 7.1076 -0.4841 17 6 7.2394 6.1378 -1.0017 18 16 8.8127 6.6011 -1.6454 19 6 8.4099 6.7598 -3.3533 20 1 7.3854 6.6551 -3.6786 21 6 9.4089 7.0195 -4.2804 22 7 10.6574 7.1477 -3.8840 23 14 8.9816 7.1885 -6.0911 24 1 7.5197 7.0032 -6.2741 25 1 9.3735 8.5390 -6.5682 26 1 9.7122 6.1569 -6.8704 27 6 6.8525 4.8040 -1.0054 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7967 1.1278 2.1363 32 1 3.7320 -0.4390 1.2942 33 1 5.9594 0.0042 0.2985 34 1 6.0241 1.5710 1.1406 35 1 3.3894 3.3607 0.3540 36 1 3.7895 5.1501 0.4128 37 1 4.4889 7.5065 0.4134 38 1 6.6895 8.1440 -0.4775 39 1 11.3559 7.3289 -4.5323 40 1 7.5145 4.0487 -1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362901902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:39 Heat of formation + Delta-G solvation = -149.628594 kcal Electronic energy + Delta-G solvation = -26541.638261 eV Core-core repulsion = 22362.095334 eV Total energy + Delta-G solvation = -4179.542927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.67254 -41.33381 -40.09783 -38.11175 -37.10823 -35.71632 -32.73490 -32.52924 -30.71884 -30.44842 -28.93446 -26.88557 -25.59379 -23.81419 -22.73885 -22.36762 -21.22988 -20.64401 -18.90486 -17.88944 -17.70603 -17.20142 -16.90729 -16.62878 -16.30058 -15.82062 -15.41455 -15.14075 -15.00059 -14.87106 -14.53497 -14.37210 -13.98607 -13.85543 -13.69825 -13.47436 -13.10386 -12.90317 -12.62210 -12.42073 -12.25062 -11.69862 -11.58272 -11.33388 -11.21425 -11.16186 -11.12422 -10.88055 -10.79642 -10.72613 -10.11673 -9.90068 -9.59061 -9.19336 -9.06710 -8.67461 -8.06852 -6.74223 -6.30971 -4.05140 1.04206 1.57461 1.61084 1.89751 2.82544 2.90430 3.17505 3.19847 3.27267 3.43533 3.93837 4.01693 4.19787 4.27112 4.44589 4.58597 4.61897 4.63859 4.71738 4.91438 5.03987 5.05673 5.06274 5.08859 5.18342 5.30581 5.41639 5.44740 5.67185 5.74528 5.80584 5.83284 5.90122 5.96549 6.19039 6.49355 6.58751 6.86575 7.09185 7.11747 7.22924 7.55698 7.98468 8.30696 9.15148 10.75785 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.002648 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.270053 B =10571.862212 C =10905.843385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.464 3.536 4 O -0.497 6.497 5 C 0.160 3.840 6 H 0.134 0.866 7 C -0.159 4.159 8 C 0.066 3.934 9 F -0.220 7.220 10 N -0.722 5.722 11 C 0.572 3.428 12 O -0.528 6.528 13 C -0.158 4.158 14 C -0.087 4.087 15 C -0.140 4.140 16 C -0.051 4.051 17 C -0.107 4.107 18 S -0.034 6.034 19 C -0.520 4.520 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.870 5.870 23 Si 0.921 3.079 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.278 1.278 27 C -0.015 4.015 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.411 0.589 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.269 0.731 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.132 -11.981 10.476 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.306 3.694 4 O -0.383 6.383 5 C 0.053 3.947 6 H 0.152 0.848 7 C -0.198 4.198 8 C 0.011 3.989 9 F -0.201 7.201 10 N -0.379 5.379 11 C 0.362 3.638 12 O -0.405 6.405 13 C -0.163 4.163 14 C -0.106 4.106 15 C -0.160 4.160 16 C -0.072 4.072 17 C -0.218 4.218 18 S 0.201 5.799 19 C -0.667 4.667 20 H 0.094 0.906 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.747 3.253 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.204 1.204 27 C -0.037 4.037 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.250 0.750 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.079 0.921 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.576 -12.112 10.627 23.844 hybrid contribution -2.104 0.303 -1.540 2.625 sum -19.680 -11.809 9.087 24.684 Atomic orbital electron populations 1.23363 0.75442 1.04160 1.02890 1.86487 1.24017 1.32420 1.83748 1.23505 0.91489 0.81934 0.72516 1.90698 1.66656 1.36266 1.44723 1.20207 0.86885 0.85182 1.02462 0.84822 1.22577 0.97140 1.02769 0.97298 1.22136 0.92050 0.99307 0.85436 1.92756 1.88794 1.84560 1.54029 1.45802 1.19489 1.07375 1.65209 1.18430 0.80217 0.89075 0.76118 1.90791 1.52664 1.51264 1.45750 1.19692 0.97485 0.91372 1.07707 1.21183 0.98090 0.93207 0.98104 1.21075 0.97137 0.95698 1.02092 1.22002 0.92138 0.99842 0.93241 1.22864 1.03294 0.94353 1.01301 1.83638 1.01600 1.87864 1.06800 1.22876 0.96799 1.56389 0.90640 0.90561 1.25006 0.94401 0.94492 0.99677 1.69992 0.99859 1.45583 1.35055 0.86068 0.78786 0.77993 0.82470 1.19503 1.20471 1.20417 1.21955 0.93320 0.96370 0.92036 0.91559 0.87621 0.91580 0.89799 0.88285 0.89456 0.90025 0.75026 0.86357 0.85723 0.84962 0.92076 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.75 10.37 -39.25 -0.41 -3.16 16 3 C 0.46 4.32 7.32 36.01 0.26 4.59 16 4 O -0.50 -5.68 15.59 -18.75 -0.29 -5.97 16 5 C 0.16 1.48 2.77 -69.09 -0.19 1.29 16 6 H 0.13 1.24 7.58 -51.93 -0.39 0.85 16 7 C -0.16 -1.33 5.31 -26.73 -0.14 -1.48 16 8 C 0.07 0.72 6.15 37.15 0.23 0.95 16 9 F -0.22 -2.80 17.36 2.25 0.04 -2.76 16 10 N -0.72 -7.87 4.86 -55.88 -0.27 -8.14 16 11 C 0.57 8.17 6.34 -12.32 -0.08 8.09 16 12 O -0.53 -8.69 13.48 5.32 0.07 -8.61 16 13 C -0.16 -2.49 5.87 -105.00 -0.62 -3.11 16 14 C -0.09 -1.16 9.54 -39.12 -0.37 -1.53 16 15 C -0.14 -1.96 10.02 -39.67 -0.40 -2.36 16 16 C -0.05 -0.89 9.79 -39.25 -0.38 -1.27 16 17 C -0.11 -2.22 5.45 -39.00 -0.21 -2.44 16 18 S -0.03 -0.85 21.40 -107.50 -2.30 -3.15 16 19 C -0.52 -14.46 9.46 30.92 0.29 -14.16 16 20 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 21 C 0.07 2.03 5.49 -17.46 -0.10 1.94 16 22 N -0.87 -25.19 13.22 55.49 0.73 -24.46 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C -0.02 -0.29 9.34 -38.92 -0.36 -0.66 16 28 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.68 8.00 -51.93 -0.42 0.27 16 33 H 0.09 0.95 7.84 -51.93 -0.41 0.54 16 34 H 0.08 1.04 5.65 -51.93 -0.29 0.74 16 35 H 0.41 4.03 5.82 -40.82 -0.24 3.80 16 36 H 0.12 1.18 6.40 -52.49 -0.34 0.84 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.14 2.90 7.65 -52.49 -0.40 2.50 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -32.68 364.26 -7.53 -40.21 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.56 Total: 3.20 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.00 Total: -8.90 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.46 Total: -32.60 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.63 Total: -17.74 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.04 Total: -2.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.30 Total: -3.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.68 -7.53 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362901902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.421 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds