Wall clock time and date at job start Sat Apr 11 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47126 * 2 1 4 4 N 1.46901 * 109.47240 * 120.00099 * 2 1 3 5 5 C 1.46895 * 110.99806 * 279.88779 * 4 2 1 6 6 H 1.09001 * 109.47845 * 39.87374 * 5 4 2 7 7 C 1.52996 * 109.47182 * 159.87662 * 5 4 2 8 8 C 1.50706 * 109.46885 * 279.87040 * 5 4 2 9 9 H 1.07999 * 119.99732 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00171 * 180.02562 * 8 5 4 11 11 N 1.31524 * 119.99834 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 120.00367 * 180.02562 * 10 8 5 13 13 H 1.48502 * 109.46891 * 90.00116 * 12 10 8 14 14 H 1.48497 * 109.47407 * 209.99986 * 12 10 8 15 15 H 1.48495 * 109.46742 * 330.00118 * 12 10 8 16 16 C 1.50705 * 109.46942 * 240.00024 * 2 1 3 17 17 O 1.21281 * 119.99565 * 240.00349 * 16 2 1 18 18 N 1.34771 * 120.00008 * 60.00019 * 16 2 1 19 19 C 1.39976 * 120.00016 * 185.56431 * 18 16 2 20 20 C 1.38855 * 120.07398 * 24.81001 * 19 18 16 21 21 C 1.38117 * 119.93843 * 179.79461 * 20 19 18 22 22 C 1.38303 * 120.09527 * 0.46303 * 21 20 19 23 23 N 1.48017 * 119.92413 * 179.76701 * 22 21 20 24 24 O 1.21800 * 119.99558 * 180.02562 * 23 22 21 25 25 O 1.21801 * 120.00209 * 0.02764 * 23 22 21 26 26 C 1.38253 * 120.14722 * 359.79511 * 22 21 20 27 27 C 1.38234 * 120.05842 * 359.97072 * 26 22 21 28 28 Cl 1.73605 * 120.04377 * 179.97438 * 27 26 22 29 29 H 1.09001 * 109.47180 * 295.00955 * 1 2 3 30 30 H 1.09000 * 109.46908 * 55.00091 * 1 2 3 31 31 H 1.09001 * 109.47237 * 175.00773 * 1 2 3 32 32 H 1.00901 * 111.00138 * 155.93043 * 4 2 1 33 33 H 1.09003 * 109.46910 * 305.03850 * 7 5 4 34 34 H 1.08999 * 109.47757 * 65.04346 * 7 5 4 35 35 H 1.09008 * 109.47354 * 185.04465 * 7 5 4 36 36 H 0.96993 * 119.99767 * 179.97438 * 11 10 8 37 37 H 0.97004 * 120.00206 * 5.56295 * 18 16 2 38 38 H 1.07993 * 120.03103 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.95071 * 180.23933 * 21 20 19 40 40 H 1.08000 * 119.97240 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.9731 0.1901 2.3727 6 1 1.0585 0.7825 2.3459 7 6 1.9961 -0.6550 3.6479 8 6 3.1675 1.1091 2.3576 9 1 3.8886 1.0442 1.5563 10 6 3.3395 2.0327 3.3668 11 7 2.4614 2.1114 4.3429 12 14 4.8194 3.1723 3.3478 13 1 4.4786 4.4139 2.6078 14 1 5.1981 3.5153 4.7421 15 1 5.9580 2.4937 2.6783 16 6 2.0323 -0.7104 -1.2305 17 8 2.7295 -1.6966 -1.1192 18 7 1.7067 -0.2500 -2.4546 19 6 2.0743 -0.9735 -3.5951 20 6 2.2912 -2.3424 -3.5108 21 6 2.6497 -3.0542 -4.6388 22 6 2.8021 -2.4039 -5.8499 23 7 3.1914 -3.1697 -7.0553 24 8 3.3264 -2.5982 -8.1224 25 8 3.3767 -4.3711 -6.9801 26 6 2.5922 -1.0402 -5.9370 27 6 2.2286 -0.3224 -4.8129 28 17 1.9657 1.3901 -4.9226 29 1 -0.3633 0.4345 0.9313 30 1 -0.3633 0.5894 -0.8418 31 1 -0.3634 -1.0238 -0.0894 32 1 2.9511 -1.0523 1.0543 33 1 1.1838 -1.3812 3.6171 34 1 2.9493 -1.1788 3.7196 35 1 1.8714 -0.0070 4.5156 36 1 2.5826 2.7608 5.0530 37 1 1.2176 0.5828 -2.5452 38 1 2.1762 -2.8506 -2.5649 39 1 2.8148 -4.1196 -4.5743 40 1 2.7124 -0.5352 -6.8840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460314778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:56 Heat of formation + Delta-G solvation = -30.332838 kcal Electronic energy + Delta-G solvation = -26772.666325 eV Core-core repulsion = 22616.172706 eV Total energy + Delta-G solvation = -4156.493619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.33036 -42.15935 -40.21185 -37.92231 -37.78778 -37.70865 -36.37994 -34.88281 -32.75390 -32.42280 -31.56349 -28.91364 -27.62241 -27.17228 -25.27743 -24.72890 -23.40499 -22.00759 -21.27069 -20.61245 -19.85005 -19.36832 -18.75539 -18.66396 -18.19732 -17.11714 -16.75647 -16.69638 -16.54597 -16.20405 -15.53281 -15.31512 -15.05330 -14.81529 -14.72043 -14.19089 -13.72408 -13.37443 -13.28180 -13.10465 -13.01738 -12.92051 -12.79633 -12.75589 -12.60605 -12.55008 -12.32800 -12.30568 -12.27800 -12.17048 -12.03260 -11.93223 -11.18318 -10.97884 -10.52088 -10.43393 -9.81860 -9.21876 -8.10370 -6.30927 -1.40860 -0.42844 0.03798 0.15235 0.70261 1.20805 1.35927 1.40312 1.46850 1.47902 2.01122 2.37925 3.10631 3.12423 3.26411 3.36112 3.47368 3.54192 3.68059 4.00729 4.16026 4.32567 4.36854 4.44207 4.53277 4.74793 4.77932 4.87479 4.95970 5.05966 5.14664 5.22358 5.27260 5.34187 5.45866 5.64470 5.87643 6.02079 6.10314 6.27816 6.43555 6.63262 6.73648 6.91763 7.41050 8.87958 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.002597 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.254033 B =10777.221788 C =11293.244547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.071 3.929 3 H 0.072 0.928 4 N -0.671 5.671 5 C 0.216 3.784 6 H 0.023 0.977 7 C -0.116 4.116 8 C -0.562 4.562 9 H 0.047 0.953 10 C 0.027 3.973 11 N -0.908 5.908 12 Si 0.945 3.055 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.276 1.276 16 C 0.531 3.469 17 O -0.521 6.521 18 N -0.655 5.655 19 C 0.224 3.776 20 C -0.129 4.129 21 C -0.015 4.015 22 C -0.072 4.072 23 N 0.037 4.963 24 O -0.172 6.172 25 O -0.176 6.176 26 C -0.012 4.012 27 C -0.078 4.078 28 Cl -0.022 7.022 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.335 0.665 33 H 0.032 0.968 34 H 0.020 0.980 35 H 0.058 0.942 36 H 0.263 0.737 37 H 0.431 0.569 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 -3.248 -19.313 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.043 4.043 3 H 0.090 0.910 4 N -0.303 5.303 5 C 0.107 3.893 6 H 0.041 0.959 7 C -0.175 4.175 8 C -0.601 4.601 9 H 0.065 0.935 10 C -0.174 4.174 11 N -0.546 5.546 12 Si 0.771 3.229 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.201 1.201 16 C 0.320 3.680 17 O -0.396 6.396 18 N -0.300 5.300 19 C 0.124 3.876 20 C -0.150 4.150 21 C -0.034 4.034 22 C -0.156 4.156 23 N 0.552 4.448 24 O -0.386 6.386 25 O -0.389 6.389 26 C -0.033 4.033 27 C -0.109 4.109 28 Cl 0.008 6.992 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.272 0.728 38 H 0.188 0.812 39 H 0.194 0.806 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.311 -3.597 -18.238 19.333 hybrid contribution 1.546 1.671 -0.138 2.280 sum -3.766 -1.926 -18.376 18.856 Atomic orbital electron populations 1.21750 0.90520 1.03062 1.03382 1.21473 0.98587 0.96938 0.87294 0.91013 1.60940 1.30299 1.36853 1.02241 1.19004 0.94808 0.88782 0.86691 0.95921 1.21538 0.97752 0.98054 1.00139 1.22081 1.09953 1.19220 1.08862 0.93504 1.25569 0.98365 0.98384 0.95095 1.69987 1.36451 1.35999 1.12186 0.85767 0.80306 0.79502 0.77313 1.19920 1.20979 1.20076 1.21229 0.78108 0.84137 0.84510 1.90649 1.36074 1.26523 1.86316 1.43759 1.56044 1.26803 1.03376 1.18049 0.92456 0.91404 0.85727 1.21453 1.01913 0.91313 1.00368 1.21193 0.91052 1.03013 0.88185 1.20911 1.16285 0.92490 0.85958 1.43642 0.97468 1.01150 1.02504 1.94532 1.55476 1.71813 1.16824 1.94550 1.54715 0.97367 1.92276 1.20732 0.92045 0.90572 0.99909 1.20256 1.09920 0.87672 0.93060 1.98430 1.94865 1.07834 1.98117 0.92145 0.89275 0.91591 0.84653 0.94930 0.96073 0.92283 0.92735 0.72803 0.81152 0.80639 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.26 71.98 0.67 -2.49 16 2 C 0.07 2.14 2.87 44.17 0.13 2.27 16 3 H 0.07 2.36 7.49 -2.39 -0.02 2.34 16 4 N -0.67 -25.97 5.86 -477.16 -2.80 -28.77 16 5 C 0.22 9.93 2.43 44.17 0.11 10.04 16 6 H 0.02 1.12 6.75 -2.39 -0.02 1.11 16 7 C -0.12 -5.43 9.22 71.98 0.66 -4.76 16 8 C -0.56 -28.49 8.01 25.60 0.21 -28.29 16 9 H 0.05 2.38 7.80 -2.91 -0.02 2.36 16 10 C 0.03 1.39 5.30 84.65 0.45 1.84 16 11 N -0.91 -48.98 11.37 21.45 0.24 -48.74 16 12 Si 0.94 41.29 29.54 68.60 2.03 43.32 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.53 14.10 6.98 87.66 0.61 14.71 16 17 O -0.52 -16.53 12.91 -3.03 -0.04 -16.57 16 18 N -0.65 -12.54 5.07 -303.42 -1.54 -14.08 16 19 C 0.22 4.15 6.43 38.16 0.25 4.40 16 20 C -0.13 -2.47 8.72 22.39 0.20 -2.28 16 21 C -0.01 -0.25 9.55 22.26 0.21 -0.04 16 22 C -0.07 -1.33 6.85 36.39 0.25 -1.08 16 23 N 0.04 0.83 4.45 -46.42 -0.21 0.62 16 24 O -0.17 -4.07 18.44 18.89 0.35 -3.72 16 25 O -0.18 -4.29 18.44 18.88 0.35 -3.94 16 26 C -0.01 -0.20 9.33 22.27 0.21 0.01 16 27 C -0.08 -1.25 6.34 22.44 0.14 -1.11 16 28 Cl -0.02 -0.31 27.79 -2.72 -0.08 -0.38 16 29 H 0.06 1.73 6.96 -2.39 -0.02 1.71 16 30 H 0.09 1.47 7.86 -2.39 -0.02 1.45 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.34 13.84 7.44 -89.69 -0.67 13.17 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 3.01 6.22 -2.38 -0.01 3.00 16 36 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.43 6.28 7.47 -92.71 -0.69 5.59 16 38 H 0.17 3.70 5.79 -2.91 -0.02 3.68 16 39 H 0.18 2.50 7.60 -2.91 -0.02 2.48 16 40 H 0.18 2.26 7.60 -2.91 -0.02 2.24 16 Total: -1.00 -59.25 358.20 2.16 -57.10 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.24 Total: 21.95 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 4.08 Total: -6.79 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -4.30 Total: -90.97 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.66 Total: -24.23 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.38 kcal Total: -59.25 2.16 -57.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460314778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.765 kcal (2) G-P(sol) polarization free energy of solvation -59.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds