Wall clock time and date at job start Sat Apr 11 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47242 * 239.99760 * 2 1 3 5 5 H 1.07993 * 119.99854 * 239.99954 * 4 2 1 6 6 C 1.37876 * 119.99900 * 59.99977 * 4 2 1 7 7 N 1.31517 * 120.00097 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47027 * 60.00223 * 8 6 4 10 10 H 1.48504 * 109.47211 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47058 * 299.99961 * 8 6 4 12 12 N 1.46903 * 109.46999 * 119.99720 * 2 1 3 13 13 C 1.46903 * 110.99905 * 275.00243 * 12 2 1 14 14 H 1.09003 * 109.47165 * 35.00105 * 13 12 2 15 15 C 1.52995 * 109.46928 * 275.00168 * 13 12 2 16 16 C 1.50703 * 109.46935 * 155.00101 * 13 12 2 17 17 O 1.21283 * 119.99864 * 359.97438 * 16 13 12 18 18 N 1.34779 * 119.99938 * 179.97438 * 16 13 12 19 19 C 1.39976 * 120.00004 * 185.52959 * 18 16 13 20 20 C 1.38850 * 120.07476 * 24.82850 * 19 18 16 21 21 C 1.38107 * 119.94297 * 179.72322 * 20 19 18 22 22 C 1.38295 * 120.09493 * 0.25145 * 21 20 19 23 23 N 1.48023 * 119.93094 * 180.02562 * 22 21 20 24 24 O 1.21802 * 119.99807 * 0.02562 * 23 22 21 25 25 O 1.21800 * 120.00315 * 180.02562 * 23 22 21 26 26 C 1.38262 * 120.14923 * 0.02684 * 22 21 20 27 27 C 1.38236 * 120.05545 * 0.02562 * 26 22 21 28 28 Cl 1.73600 * 120.04800 * 179.97438 * 27 26 22 29 29 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47672 * 300.00246 * 1 2 3 31 31 H 1.08998 * 109.47121 * 60.00247 * 1 2 3 32 32 H 0.96998 * 120.00588 * 180.02562 * 7 6 4 33 33 H 1.00896 * 110.99453 * 151.05019 * 12 2 1 34 34 H 1.08997 * 109.47679 * 59.99838 * 15 13 12 35 35 H 1.09002 * 109.47219 * 180.02562 * 15 13 12 36 36 H 1.09003 * 109.47147 * 299.99949 * 15 13 12 37 37 H 0.96998 * 119.99521 * 5.53965 * 18 16 13 38 38 H 1.08000 * 120.02820 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.95709 * 180.28113 * 21 20 19 40 40 H 1.07998 * 119.97532 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2575 0.9330 2.2907 15 6 3.4109 0.9810 2.3224 16 6 1.9785 -0.5675 3.6259 17 8 1.8631 -1.7742 3.5856 18 7 2.0139 0.0667 4.8147 19 6 2.0342 -0.6735 6.0025 20 6 2.5247 -1.9725 6.0046 21 6 2.5488 -2.6983 7.1793 22 6 2.0802 -2.1351 8.3522 23 7 2.1083 -2.9162 9.6093 24 8 2.5441 -4.0535 9.6100 25 8 1.6955 -2.4216 10.6430 26 6 1.5856 -0.8440 8.3534 27 6 1.5576 -0.1122 7.1810 28 17 0.9359 1.5086 7.1825 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7081 1.1607 -3.4844 33 1 2.9173 -1.1204 1.0288 34 1 3.4862 1.5525 1.3973 35 1 3.4577 1.6598 3.1740 36 1 4.2358 0.2707 2.3786 37 1 2.0251 1.0361 4.8470 38 1 2.8909 -2.4134 5.0893 39 1 2.9345 -3.7072 7.1821 40 1 1.2200 -0.4071 9.2709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460314782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:02 Heat of formation + Delta-G solvation = -27.883551 kcal Electronic energy + Delta-G solvation = -26615.708837 eV Core-core repulsion = 22459.321427 eV Total energy + Delta-G solvation = -4156.387410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.31848 -42.07636 -40.14480 -37.94910 -37.84229 -37.69919 -36.29127 -35.00116 -32.67191 -32.39328 -31.52980 -28.77039 -27.58763 -27.28443 -25.37572 -24.74083 -23.46535 -21.99016 -21.27717 -20.60094 -19.87681 -19.38713 -18.80224 -18.65315 -17.93264 -17.15529 -16.69795 -16.63834 -16.23427 -15.99507 -15.67177 -15.22753 -15.03931 -14.82337 -14.77935 -14.36557 -13.88415 -13.49315 -13.36387 -13.19200 -12.99739 -12.83586 -12.75255 -12.65176 -12.56909 -12.49566 -12.36397 -12.32296 -12.27654 -12.19611 -12.11183 -11.94861 -11.02131 -10.88623 -10.56301 -10.41057 -9.76853 -9.08232 -8.14039 -6.26388 -1.39133 -0.40968 0.05896 0.16655 0.72123 1.30640 1.42960 1.45066 1.49759 1.52908 2.03994 2.41811 3.13067 3.15595 3.29130 3.37760 3.50218 3.57919 3.71765 4.03496 4.04931 4.14247 4.34323 4.46091 4.54598 4.66701 4.76609 4.80700 4.81964 5.04693 5.08397 5.18991 5.20054 5.29451 5.44498 5.65627 5.83160 5.98987 6.22034 6.41901 6.44236 6.69687 6.83352 6.96655 7.43584 8.91135 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.002324 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.156312 B =12047.288527 C =12945.294054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.223 3.777 3 H -0.009 1.009 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.675 5.675 13 C 0.069 3.931 14 H 0.108 0.892 15 C -0.169 4.169 16 C 0.531 3.469 17 O -0.514 6.514 18 N -0.657 5.657 19 C 0.227 3.773 20 C -0.132 4.132 21 C -0.016 4.016 22 C -0.073 4.073 23 N 0.037 4.963 24 O -0.180 6.180 25 O -0.171 6.171 26 C -0.012 4.012 27 C -0.079 4.079 28 Cl -0.020 7.020 29 H 0.020 0.980 30 H 0.025 0.975 31 H 0.060 0.940 32 H 0.263 0.737 33 H 0.340 0.660 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.430 0.570 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 3.137 20.927 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.116 3.884 3 H 0.009 0.991 4 C -0.576 4.576 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.306 5.306 13 C -0.045 4.045 14 H 0.126 0.874 15 C -0.228 4.228 16 C 0.319 3.681 17 O -0.386 6.386 18 N -0.303 5.303 19 C 0.126 3.874 20 C -0.153 4.153 21 C -0.036 4.036 22 C -0.158 4.158 23 N 0.552 4.448 24 O -0.392 6.392 25 O -0.386 6.386 26 C -0.032 4.032 27 C -0.110 4.110 28 Cl 0.009 6.991 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.271 0.729 38 H 0.187 0.813 39 H 0.191 0.809 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.148 2.685 20.174 20.594 hybrid contribution 0.701 0.489 -0.903 1.244 sum 3.850 3.173 19.270 19.906 Atomic orbital electron populations 1.21621 0.98154 0.98616 0.99280 1.18891 0.92200 0.91553 0.85792 0.99102 1.21510 1.31747 1.12693 0.91618 0.92561 1.25610 0.95192 0.95639 1.01705 1.69976 1.37207 1.23868 1.24240 0.85643 0.78851 0.78552 0.78751 1.20240 1.21030 1.19466 1.60263 1.33274 1.32353 1.04707 1.21508 1.00758 0.93569 0.88694 0.87427 1.22394 0.95330 1.01008 1.04088 1.21315 0.73686 0.88383 0.84723 1.90660 1.45478 1.15639 1.86842 1.43851 1.71680 1.11773 1.02994 1.18034 0.91635 0.92274 0.85419 1.21441 1.01322 0.92948 0.99559 1.21176 0.92174 1.01749 0.88456 1.20906 1.15815 0.94361 0.84719 1.43653 0.97491 1.00861 1.02752 1.94553 1.48339 1.03451 1.92814 1.94527 1.49075 1.73292 1.21686 1.20739 0.93072 0.90191 0.99235 1.20249 1.06821 0.90821 0.93060 1.98425 1.85250 1.16949 1.98495 0.96119 0.95640 0.92164 0.92807 0.84162 0.91967 0.88818 0.91615 0.72887 0.81333 0.80853 0.80141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 9.17 71.98 0.66 -4.89 16 2 C 0.22 10.33 2.41 44.17 0.11 10.44 16 3 H -0.01 -0.42 7.11 -2.39 -0.02 -0.43 16 4 C -0.54 -27.88 8.59 25.60 0.22 -27.66 16 5 H 0.06 2.90 7.62 -2.91 -0.02 2.88 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.91 -49.84 11.32 21.45 0.24 -49.59 16 8 Si 0.96 41.90 29.54 68.60 2.03 43.92 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 N -0.67 -25.84 5.54 -477.14 -2.64 -28.48 16 13 C 0.07 1.92 2.81 44.17 0.12 2.04 16 14 H 0.11 2.96 7.11 -2.39 -0.02 2.94 16 15 C -0.17 -3.71 9.05 71.98 0.65 -3.06 16 16 C 0.53 13.49 7.03 87.66 0.62 14.10 16 17 O -0.51 -16.57 13.60 -3.04 -0.04 -16.61 16 18 N -0.66 -11.63 5.04 -303.41 -1.53 -13.16 16 19 C 0.23 4.04 6.43 38.16 0.25 4.28 16 20 C -0.13 -2.50 8.72 22.39 0.20 -2.31 16 21 C -0.02 -0.27 9.55 22.25 0.21 -0.06 16 22 C -0.07 -1.35 6.85 36.39 0.25 -1.10 16 23 N 0.04 0.84 4.45 -46.41 -0.21 0.63 16 24 O -0.18 -4.41 18.44 18.88 0.35 -4.06 16 25 O -0.17 -4.02 18.44 18.89 0.35 -3.67 16 26 C -0.01 -0.19 9.33 22.27 0.21 0.02 16 27 C -0.08 -1.19 6.34 22.44 0.14 -1.05 16 28 Cl -0.02 -0.26 27.79 -2.72 -0.08 -0.33 16 29 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.02 1.02 7.43 -2.39 -0.02 1.01 16 31 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 32 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 33 H 0.34 13.01 7.96 -89.70 -0.71 12.29 16 34 H 0.06 1.63 7.43 -2.39 -0.02 1.61 16 35 H 0.09 1.31 7.70 -2.39 -0.02 1.30 16 36 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 37 H 0.43 5.37 7.37 -92.71 -0.68 4.69 16 38 H 0.17 3.68 5.79 -2.91 -0.02 3.67 16 39 H 0.17 2.54 7.60 -2.91 -0.02 2.52 16 40 H 0.18 2.16 7.60 -2.91 -0.02 2.14 16 Total: -1.00 -62.12 358.43 2.28 -59.84 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.27 Total: 19.34 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 4.08 Total: -7.82 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -4.14 Total: -90.61 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.66 Total: -24.34 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.33 kcal Total: -62.12 2.28 -59.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460314782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.960 kcal (2) G-P(sol) polarization free energy of solvation -62.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds