Wall clock time and date at job start Sat Apr 11 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99853 * 2 1 4 4 S 1.65593 * 119.99852 * 179.97438 * 2 1 3 5 5 C 1.81404 * 108.33189 * 117.53176 * 4 2 1 6 6 O 1.42097 * 108.33424 * 242.47191 * 4 2 1 7 7 N 1.49363 * 108.73375 * 0.02562 * 4 2 1 8 8 S 1.65598 * 120.00076 * 179.97438 * 7 4 2 9 9 O 1.42092 * 106.40443 * 293.54281 * 8 7 4 10 10 O 1.42107 * 106.39933 * 66.46326 * 8 7 4 11 11 N 1.65589 * 107.21856 * 179.97438 * 8 7 4 12 12 C 1.47430 * 125.65302 * 269.69807 * 11 8 7 13 13 C 1.55124 * 104.72645 * 155.81556 * 12 11 8 14 14 C 1.55158 * 101.48407 * 37.29563 * 13 12 11 15 15 O 1.42898 * 110.72475 * 82.69592 * 14 13 12 16 16 C 1.50701 * 110.71951 * 205.96859 * 14 13 12 17 17 H 1.08007 * 119.99778 * 20.71194 * 16 14 13 18 18 C 1.37872 * 120.00487 * 200.70702 * 16 14 13 19 19 N 1.31515 * 120.00545 * 173.62589 * 18 16 14 20 20 Si 1.86810 * 119.99708 * 353.62635 * 18 16 14 21 21 H 1.48506 * 109.46649 * 86.31960 * 20 18 16 22 22 H 1.48501 * 109.47112 * 206.31477 * 20 18 16 23 23 H 1.48495 * 109.47241 * 326.31781 * 20 18 16 24 24 C 1.47026 * 125.65016 * 90.00262 * 11 8 7 25 25 H 1.08999 * 109.47146 * 270.00408 * 1 2 3 26 26 H 1.09000 * 109.47206 * 150.00001 * 1 2 3 27 27 H 1.09004 * 109.46915 * 30.00263 * 1 2 3 28 28 H 1.09000 * 109.47492 * 90.00131 * 3 2 1 29 29 H 1.09002 * 109.46831 * 210.00035 * 3 2 1 30 30 H 1.08998 * 109.47607 * 329.99477 * 3 2 1 31 31 H 1.09001 * 109.47004 * 61.10872 * 5 4 2 32 32 H 1.09003 * 109.47308 * 181.10213 * 5 4 2 33 33 H 1.08996 * 109.47354 * 301.10810 * 5 4 2 34 34 H 1.09005 * 110.36316 * 274.74270 * 12 11 8 35 35 H 1.09001 * 110.36491 * 37.06442 * 12 11 8 36 36 H 1.08996 * 111.19429 * 279.19422 * 13 12 11 37 37 H 1.08994 * 110.94014 * 155.28431 * 13 12 11 38 38 H 0.96700 * 113.99730 * 61.15523 * 15 14 13 39 39 H 0.96999 * 120.00112 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.88122 * 300.44366 * 24 11 8 41 41 H 1.09000 * 109.87966 * 61.59938 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 6 3.2676 -1.5309 -1.5263 6 8 3.0564 -1.5090 1.1968 7 7 1.3078 -2.5568 0.0005 8 16 1.8396 -4.1250 0.0004 9 8 2.4842 -4.3301 -1.2492 10 8 2.4840 -4.3303 1.2503 11 7 0.4991 -5.0972 0.0010 12 6 -0.1924 -5.6067 1.1992 13 6 -1.6412 -5.8950 0.7257 14 6 -1.3956 -6.4387 -0.7066 15 8 -1.0609 -7.8274 -0.6698 16 6 -2.6004 -6.2022 -1.5805 17 1 -3.3216 -5.4442 -1.3123 18 6 -2.7820 -6.9532 -2.7223 19 7 -3.8925 -6.8359 -3.4170 20 14 -1.4506 -8.1377 -3.2827 21 1 -1.6308 -9.4440 -2.5996 22 1 -1.5458 -8.3303 -4.7521 23 1 -0.1170 -7.5806 -2.9418 24 6 -0.1950 -5.6004 -1.1934 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 -0.8900 -0.5138 27 1 -0.3633 0.8900 -0.5139 28 1 2.3792 1.5834 1.0276 29 1 3.1499 1.1383 -0.5139 30 1 1.6085 2.0284 -0.5139 31 1 3.9807 -0.7070 -1.5550 32 1 3.8059 -2.4783 -1.5543 33 1 2.6020 -1.4656 -2.3869 34 1 0.2834 -6.5221 1.5512 35 1 -0.1938 -4.8522 1.9859 36 1 -2.2364 -4.9822 0.7004 37 1 -2.1135 -6.6497 1.3544 38 1 -1.7528 -8.3889 -0.2942 39 1 -4.0204 -7.3646 -4.2201 40 1 -0.5472 -4.7641 -1.7973 41 1 0.4800 -6.2246 -1.7789 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475430565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:26 Heat of formation + Delta-G solvation = -92.322594 kcal Electronic energy + Delta-G solvation = -27611.973721 eV Core-core repulsion = 23590.279682 eV Total energy + Delta-G solvation = -4021.694039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.096 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -38.33124 -37.00347 -36.75740 -36.60864 -35.59311 -34.66639 -33.34863 -32.31960 -30.05973 -29.50598 -28.37639 -28.36971 -25.21081 -24.62630 -21.99236 -20.23635 -19.75828 -18.49843 -17.77211 -17.59735 -17.26708 -16.83739 -16.58783 -15.57198 -15.49841 -15.01630 -14.78028 -14.62843 -14.35854 -14.14488 -13.84648 -13.52396 -13.38563 -12.95546 -12.92535 -12.80195 -12.51435 -12.43899 -12.10835 -11.92619 -11.81227 -11.74763 -11.73420 -11.62915 -11.55325 -11.22963 -10.64823 -10.55937 -10.50798 -10.34703 -10.17492 -10.09807 -9.64990 -9.16916 -8.64999 -8.45245 -8.28225 -6.16949 -4.27883 -0.85005 0.97796 2.04324 2.80602 3.30996 3.49891 3.56762 3.71993 3.73253 4.03774 4.30762 4.47594 4.52583 4.70113 4.75888 4.85161 4.95169 5.12451 5.15648 5.26904 5.28415 5.36000 5.42614 5.43519 5.70232 5.85206 5.87233 5.91681 6.09576 6.31639 6.54832 6.67359 6.80165 6.89603 6.98605 7.13105 7.54342 8.18582 8.72394 8.88533 9.45729 10.91809 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.004054 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.456526 B = 6905.169534 C = 7236.858804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.964 5.964 3 C 0.083 3.917 4 S 2.569 3.431 5 C -0.660 4.660 6 O -0.937 6.937 7 N -1.527 6.527 8 S 2.800 3.200 9 O -1.000 7.000 10 O -0.980 6.980 11 N -0.985 5.985 12 C 0.127 3.873 13 C -0.142 4.142 14 C 0.219 3.781 15 O -0.565 6.565 16 C -0.549 4.549 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.888 5.888 20 Si 0.933 3.067 21 H -0.287 1.287 22 H -0.322 1.322 23 H -0.264 1.264 24 C 0.129 3.871 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.372 0.628 39 H 0.266 0.734 40 H 0.080 0.920 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.602 16.852 4.913 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.799 5.799 3 C -0.063 4.063 4 S 2.665 3.335 5 C -0.817 4.817 6 O -0.914 6.914 7 N -1.548 6.548 8 S 2.807 3.193 9 O -0.983 6.983 10 O -0.963 6.963 11 N -0.828 5.828 12 C 0.002 3.998 13 C -0.182 4.182 14 C 0.178 3.822 15 O -0.373 6.373 16 C -0.587 4.587 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.523 5.523 20 Si 0.766 3.234 21 H -0.214 1.214 22 H -0.252 1.252 23 H -0.190 1.190 24 C 0.004 3.996 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.220 0.780 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.871 16.861 5.300 21.291 hybrid contribution 0.035 -0.624 -0.809 1.022 sum 11.906 16.237 4.492 20.630 Atomic orbital electron populations 1.21804 0.75403 1.04613 1.03386 1.55963 1.15851 1.17349 1.90774 1.21805 0.96073 0.85042 1.03350 1.06193 0.73286 0.75413 0.78632 1.30779 1.15947 1.13033 1.21985 1.93633 1.73171 1.84208 1.40422 1.76602 1.62659 1.32122 1.83390 1.00987 0.72114 0.72970 0.73214 1.93601 1.73801 1.85520 1.45351 1.93652 1.73068 1.84979 1.44578 1.58088 1.47751 1.62297 1.14662 1.22014 0.93501 0.98140 0.86162 1.23390 0.94153 1.02036 0.98571 1.20085 0.91825 0.78385 0.91900 1.86148 1.47374 1.19627 1.84126 1.21255 1.06586 1.22656 1.08167 0.89952 1.25115 0.95586 0.96588 0.95616 1.69961 1.25039 1.40490 1.16841 0.86005 0.82586 0.80835 0.73929 1.21439 1.25245 1.18989 1.22462 0.94061 0.97672 0.85399 0.91825 0.88196 0.90640 0.91149 0.91465 0.89283 0.85043 0.83090 0.83392 0.91741 0.91689 0.90220 0.90841 0.77981 0.92446 0.90156 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.53 59.85 0.63 1.36 16 2 N -0.96 -8.13 3.63 -129.20 -0.47 -8.60 16 3 C 0.08 0.38 10.78 59.84 0.65 1.02 16 4 S 2.57 32.18 4.46 -98.05 -0.44 31.74 16 5 C -0.66 -5.84 10.14 101.05 1.02 -4.81 16 6 O -0.94 -15.36 17.47 -39.54 -0.69 -16.05 16 7 N -1.53 -24.74 9.61 60.35 0.58 -24.16 16 8 S 2.80 55.82 6.03 -98.05 -0.59 55.23 16 9 O -1.00 -20.23 15.51 -57.17 -0.89 -21.12 16 10 O -0.98 -21.66 17.07 -60.93 -1.04 -22.70 16 11 N -0.98 -20.44 3.75 -111.29 -0.42 -20.86 16 12 C 0.13 2.39 6.98 -2.41 -0.02 2.38 16 13 C -0.14 -2.72 6.25 -24.47 -0.15 -2.87 16 14 C 0.22 4.99 0.68 -89.94 -0.06 4.93 16 15 O -0.57 -12.50 8.91 -35.23 -0.31 -12.81 16 16 C -0.55 -14.47 8.70 -34.44 -0.30 -14.77 16 17 H 0.08 2.33 7.98 -52.48 -0.42 1.91 16 18 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 19 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 20 Si 0.93 23.40 24.91 -169.99 -4.23 19.16 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.32 -8.22 7.11 56.52 0.40 -7.82 16 23 H -0.26 -6.66 5.19 56.52 0.29 -6.37 16 24 C 0.13 2.92 5.76 -3.06 -0.02 2.90 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 0.94 7.22 -51.93 -0.37 0.57 16 27 H 0.07 0.37 7.89 -51.93 -0.41 -0.04 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.14 7.45 -51.93 -0.39 -0.24 16 30 H 0.09 0.19 7.89 -51.93 -0.41 -0.22 16 31 H 0.13 0.58 7.69 -51.92 -0.40 0.18 16 32 H 0.15 1.61 6.69 -51.92 -0.35 1.27 16 33 H 0.15 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.51 7.98 -51.93 -0.41 1.10 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.37 7.06 9.07 45.56 0.41 7.48 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 1.80 7.81 -51.93 -0.41 1.39 16 41 H 0.07 1.63 6.31 -51.93 -0.33 1.30 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -38.15 351.14 -6.04 -44.20 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.26 Total: 3.80 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 1.65 Total: -7.86 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: 0.47 Total: -78.87 kcal Atomic # 8 Polarization: -69.76 SS G_CDS: -2.93 Total: -72.69 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.23 Total: 19.16 kcal Atomic # 16 Polarization: 88.00 SS G_CDS: -1.03 Total: 86.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.15 -6.04 -44.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475430565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.127 kcal (2) G-P(sol) polarization free energy of solvation -38.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds