Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47199 * 2 1 4 4 N 1.46500 * 109.47126 * 240.00409 * 2 1 3 5 5 C 1.34780 * 120.00208 * 84.99525 * 4 2 1 6 6 O 1.21563 * 119.99851 * 0.02562 * 5 4 2 7 7 C 1.47692 * 119.99620 * 180.02562 * 5 4 2 8 8 C 1.39654 * 120.17167 * 359.97438 * 7 5 4 9 9 C 1.37852 * 119.88069 * 180.02562 * 8 7 5 10 10 S 1.76196 * 119.89233 * 180.02562 * 9 8 7 11 11 O 1.42096 * 106.40595 * 203.53919 * 10 9 8 12 12 O 1.42107 * 106.40470 * 336.46045 * 10 9 8 13 13 C 1.76199 * 107.21950 * 89.99797 * 10 9 8 14 14 H 1.07995 * 119.99950 * 0.02562 * 13 10 9 15 15 C 1.37881 * 120.00068 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00088 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99987 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47170 * 89.99832 * 17 15 13 19 19 H 1.48502 * 109.46948 * 209.99969 * 17 15 13 20 20 H 1.48506 * 109.47122 * 329.99559 * 17 15 13 21 21 C 1.38464 * 120.21707 * 0.02562 * 9 8 7 22 22 C 1.38197 * 120.34061 * 359.97438 * 21 9 8 23 23 C 1.38326 * 120.11600 * 0.02562 * 22 21 9 24 24 F 1.35103 * 120.10953 * 180.27268 * 23 22 21 25 25 C 1.52994 * 109.47258 * 120.00360 * 2 1 3 26 26 C 1.52995 * 117.50022 * 8.61888 * 25 2 1 27 27 C 1.53002 * 117.49628 * 299.99499 * 25 2 1 28 28 H 1.08998 * 109.46886 * 299.99869 * 1 2 3 29 29 H 1.09004 * 109.46987 * 59.99745 * 1 2 3 30 30 H 1.08999 * 109.46779 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99573 * 265.00286 * 4 2 1 32 32 H 1.08004 * 120.06065 * 359.97438 * 8 7 5 33 33 H 0.97002 * 119.99883 * 179.97438 * 16 15 13 34 34 H 1.07996 * 119.82748 * 180.02562 * 21 9 8 35 35 H 1.07998 * 119.94215 * 180.02562 * 22 21 9 36 36 H 1.08999 * 115.55228 * 154.33009 * 25 2 1 37 37 H 1.09005 * 117.50183 * 0.02562 * 26 25 2 38 38 H 1.09006 * 117.50108 * 145.02408 * 26 25 2 39 39 H 1.09002 * 117.50058 * 214.97915 * 27 25 2 40 40 H 1.09000 * 117.50264 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8583 1.1615 -2.4116 7 6 2.6388 -0.7145 -3.5632 8 6 2.9720 -2.0695 -3.5045 9 6 3.4310 -2.7134 -4.6337 10 16 3.8508 -4.4230 -4.5601 11 8 4.7665 -4.6574 -5.6211 12 8 4.1491 -4.7048 -3.1996 13 6 2.3943 -5.3350 -4.9493 14 1 1.4752 -4.8145 -5.1738 15 6 2.4281 -6.7133 -4.9671 16 7 3.5476 -7.3473 -4.6941 17 14 0.8842 -7.6802 -5.3804 18 1 0.8217 -7.9103 -6.8460 19 1 0.9146 -8.9866 -4.6750 20 1 -0.3113 -6.9122 -4.9484 21 6 3.5631 -2.0211 -5.8255 22 6 3.2359 -0.6801 -5.8939 23 6 2.7741 -0.0202 -4.7693 24 9 2.4491 1.2894 -4.8377 25 6 2.0400 -0.7213 1.2491 26 6 1.0105 -1.4541 2.1116 27 6 1.6358 -0.1495 2.6095 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.8711 -2.6117 -2.5759 33 1 3.5713 -8.3169 -4.7063 34 1 3.9228 -2.5319 -6.7064 35 1 3.3411 -0.1465 -6.8269 36 1 3.0324 -1.1641 1.1641 37 1 -0.0302 -1.4228 1.7889 38 1 1.3254 -2.3795 2.5941 39 1 2.3621 -0.2166 3.4196 40 1 1.0069 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548713158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -141.438608 kcal Electronic energy + Delta-G solvation = -27323.383353 eV Core-core repulsion = 23144.195571 eV Total energy + Delta-G solvation = -4179.187782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -50.20660 -41.43859 -39.80098 -38.78260 -37.41698 -36.13345 -35.46412 -35.16875 -32.98587 -31.99170 -30.61571 -28.24818 -26.37162 -24.99650 -24.23784 -23.28243 -21.99701 -21.11496 -20.66563 -19.57239 -18.91727 -18.34296 -18.04919 -17.70726 -17.20272 -17.03833 -16.84228 -16.29947 -16.09615 -15.84166 -15.78977 -15.63738 -15.17731 -14.73796 -14.48331 -14.32709 -14.18281 -14.00058 -13.65087 -13.25363 -13.10070 -12.98126 -12.93977 -12.85057 -12.47375 -12.36874 -12.27444 -12.26769 -11.98501 -11.75027 -11.48106 -11.22280 -11.13118 -11.00744 -10.88612 -10.52836 -10.33692 -10.14821 -8.75350 -7.49041 -0.70811 -0.33989 0.08394 1.38891 1.39598 1.44954 1.55527 1.86204 2.21605 2.29887 2.59913 2.80758 2.90277 3.25186 3.36540 3.44041 3.64835 3.74622 3.76279 3.91768 3.98544 4.08180 4.12237 4.15267 4.30541 4.45796 4.48451 4.57980 4.63282 4.74200 4.77645 4.85073 4.89177 5.00411 5.03675 5.11838 5.28174 5.28504 5.30773 5.39136 5.44269 5.89251 6.27668 6.78614 6.94325 8.21874 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.003956 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.815572 B = 7075.773286 C = 8734.277820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.172 3.828 3 H 0.079 0.921 4 N -0.710 5.710 5 C 0.565 3.435 6 O -0.559 6.559 7 C -0.206 4.206 8 C 0.035 3.965 9 C -0.672 4.672 10 S 2.602 3.398 11 O -1.014 7.014 12 O -1.013 7.013 13 C -1.021 5.021 14 H 0.124 0.876 15 C 0.076 3.924 16 N -0.887 5.887 17 Si 0.987 3.013 18 H -0.254 1.254 19 H -0.263 1.263 20 H -0.248 1.248 21 C 0.025 3.975 22 C -0.166 4.166 23 C 0.188 3.812 24 F -0.116 7.116 25 C -0.184 4.184 26 C -0.177 4.177 27 C -0.158 4.158 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.160 0.840 33 H 0.301 0.699 34 H 0.169 0.831 35 H 0.190 0.810 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 11.257 7.416 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.069 3.931 3 H 0.097 0.903 4 N -0.362 5.362 5 C 0.353 3.647 6 O -0.439 6.439 7 C -0.211 4.211 8 C 0.016 3.984 9 C -0.757 4.757 10 S 2.789 3.211 11 O -1.011 7.011 12 O -1.010 7.010 13 C -1.155 5.155 14 H 0.142 0.858 15 C -0.138 4.138 16 N -0.518 5.518 17 Si 0.805 3.195 18 H -0.179 1.179 19 H -0.187 1.187 20 H -0.171 1.171 21 C 0.007 3.993 22 C -0.185 4.185 23 C 0.167 3.833 24 F -0.094 7.094 25 C -0.202 4.202 26 C -0.214 4.214 27 C -0.196 4.196 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.249 0.751 32 H 0.177 0.823 33 H 0.111 0.889 34 H 0.187 0.813 35 H 0.207 0.793 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.765 11.734 7.662 15.153 hybrid contribution -0.799 -0.435 -0.402 0.995 sum -6.564 11.299 7.260 14.948 Atomic orbital electron populations 1.22276 0.94229 1.02964 1.02560 1.20517 0.94564 0.96126 0.81898 0.90297 1.46027 1.66368 1.14752 1.09074 1.17930 0.77409 0.86011 0.83377 1.90784 1.51638 1.16147 1.85358 1.20125 1.11167 0.95232 0.94615 1.21051 0.87602 0.91889 0.97898 1.31013 1.17094 1.26766 1.00861 1.00643 0.76146 0.71666 0.72674 1.93302 1.65539 1.84559 1.57707 1.93296 1.86247 1.83797 1.37707 1.30478 1.17673 1.03153 1.64168 0.85826 1.25934 1.01344 0.98002 0.88509 1.69975 1.28979 1.12719 1.40077 0.85164 0.77011 0.77486 0.79822 1.17863 1.18719 1.17132 1.21333 0.88088 0.93445 0.96469 1.21557 1.02893 0.94938 0.99087 1.18083 0.93384 0.78086 0.93728 1.91587 1.88970 1.32054 1.96767 1.22473 1.00633 1.05897 0.91243 1.23280 0.98918 0.96622 1.02584 1.23045 1.03567 0.97884 0.95063 0.89407 0.93896 0.91037 0.75149 0.82289 0.88913 0.81333 0.79328 0.87307 0.87281 0.88154 0.87570 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.08 71.98 0.58 -2.53 16 2 C 0.17 3.71 2.97 44.99 0.13 3.84 16 3 H 0.08 1.92 7.58 -2.38 -0.02 1.90 16 4 N -0.71 -18.07 5.03 -445.55 -2.24 -20.31 16 5 C 0.57 17.80 7.73 86.74 0.67 18.47 16 6 O -0.56 -20.39 15.00 -3.91 -0.06 -20.45 16 7 C -0.21 -6.60 5.88 -20.05 -0.12 -6.72 16 8 C 0.03 1.18 9.01 22.52 0.20 1.38 16 9 C -0.67 -25.23 5.81 22.23 0.13 -25.10 16 10 S 2.60 127.92 4.65 -56.49 -0.26 127.66 16 11 O -1.01 -55.04 17.15 -128.00 -2.20 -57.24 16 12 O -1.01 -54.43 17.15 -128.00 -2.20 -56.63 16 13 C -1.02 -51.56 9.58 67.74 0.65 -50.91 16 14 H 0.12 5.57 7.81 -2.91 -0.02 5.55 16 15 C 0.08 3.91 5.46 84.66 0.46 4.37 16 16 N -0.89 -49.28 13.19 21.45 0.28 -48.99 16 17 Si 0.99 38.23 29.54 68.60 2.03 40.25 16 18 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 21 C 0.03 0.80 9.51 22.31 0.21 1.01 16 22 C -0.17 -4.35 10.01 22.28 0.22 -4.13 16 23 C 0.19 5.72 7.29 22.67 0.17 5.88 16 24 F -0.12 -3.66 15.55 44.97 0.70 -2.96 16 25 C -0.18 -3.20 5.87 -10.80 -0.06 -3.26 16 26 C -0.18 -2.56 9.57 30.59 0.29 -2.27 16 27 C -0.16 -2.11 9.90 30.60 0.30 -1.81 16 28 H 0.09 1.29 7.07 -2.39 -0.02 1.27 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.27 6.97 -2.39 -0.02 1.26 16 31 H 0.41 9.49 6.64 -92.70 -0.62 8.87 16 32 H 0.16 4.91 5.95 -2.91 -0.02 4.90 16 33 H 0.30 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.17 4.87 7.60 -2.91 -0.02 4.85 16 35 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 1.46 5.85 -2.38 -0.01 1.45 16 38 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.23 7.61 -2.39 -0.02 1.21 16 Total: -1.00 -72.33 357.27 0.39 -71.94 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.49 Total: 28.50 kcal Atomic # 6 Polarization: -65.62 SS G_CDS: 3.84 Total: -61.77 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.96 Total: -69.31 kcal Atomic # 8 Polarization: -129.86 SS G_CDS: -4.45 Total: -134.31 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.70 Total: -2.96 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: 127.92 SS G_CDS: -0.26 Total: 127.66 kcal Total: -72.33 0.39 -71.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548713158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.498 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds