Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47296 * 2 1 4 4 C 1.50701 * 109.46788 * 240.00096 * 2 1 3 5 5 O 1.21285 * 120.00290 * 239.99669 * 4 2 1 6 6 N 1.34782 * 119.99845 * 60.00602 * 4 2 1 7 7 C 1.40002 * 119.99776 * 185.72370 * 6 4 2 8 8 C 1.39198 * 120.49596 * 24.50023 * 7 6 4 9 9 C 1.38559 * 118.37852 * 180.02562 * 8 7 6 10 10 C 1.38218 * 119.26329 * 0.03335 * 9 8 7 11 11 N 1.31902 * 120.92984 * 359.96891 * 10 9 8 12 12 C 1.31891 * 121.77832 * 0.02562 * 11 10 9 13 13 Cl 1.73598 * 119.68273 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46992 * 120.00334 * 2 1 3 15 15 C 1.36936 * 119.99834 * 60.00102 * 14 2 1 16 16 H 1.07997 * 120.00276 * 5.14294 * 15 14 2 17 17 C 1.38816 * 119.99706 * 185.14515 * 15 14 2 18 18 N 1.31617 * 119.99748 * 34.63905 * 17 15 14 19 19 Si 1.86796 * 120.00034 * 214.63479 * 17 15 14 20 20 H 1.48498 * 109.47374 * 95.00266 * 19 17 15 21 21 H 1.48504 * 109.47184 * 215.00413 * 19 17 15 22 22 H 1.48500 * 109.47386 * 335.00194 * 19 17 15 23 23 C 1.46498 * 119.99758 * 239.99129 * 14 2 1 24 24 C 1.52999 * 109.46582 * 84.59815 * 23 14 2 25 25 C 1.50707 * 109.47186 * 179.97438 * 24 23 14 26 26 O 1.20827 * 119.99527 * 359.97438 * 25 24 23 27 27 O 1.34228 * 120.00164 * 179.97438 * 25 24 23 28 28 H 1.09001 * 109.47089 * 59.99254 * 1 2 3 29 29 H 1.08996 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46708 * 300.00060 * 1 2 3 31 31 H 0.96999 * 119.99993 * 5.71291 * 6 4 2 32 32 H 1.08001 * 120.81147 * 0.02562 * 8 7 6 33 33 H 1.08002 * 120.37003 * 180.02562 * 9 8 7 34 34 H 1.07998 * 119.53611 * 180.25153 * 10 9 8 35 35 H 0.97003 * 120.00099 * 179.97438 * 18 17 15 36 36 H 1.09006 * 109.47349 * 204.59122 * 23 14 2 37 37 H 1.08996 * 109.47895 * 324.59835 * 23 14 2 38 38 H 1.09002 * 109.47170 * 299.99551 * 24 23 14 39 39 H 1.08997 * 109.47725 * 59.99552 * 24 23 14 40 40 H 0.96696 * 117.00052 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.0714 -0.9751 -3.5952 8 6 2.2938 -2.3471 -3.5187 9 6 2.6534 -3.0214 -4.6745 10 6 2.7794 -2.3163 -5.8567 11 7 2.5619 -1.0159 -5.8969 12 6 2.2179 -0.3356 -4.8207 13 17 1.9454 1.3750 -4.9357 14 7 2.0183 -0.6907 1.1962 15 6 1.6875 -2.0017 1.4127 16 1 1.1370 -2.5507 0.6631 17 6 2.0596 -2.6251 2.5959 18 7 2.0854 -1.9412 3.7202 19 14 2.5236 -4.4345 2.5925 20 1 3.9978 -4.5673 2.4733 21 1 2.0707 -5.0641 3.8589 22 1 1.8712 -5.1107 1.4426 23 6 2.8607 0.0212 2.1604 24 6 1.9742 0.7957 3.1377 25 6 2.8406 1.5276 4.1301 26 8 4.0437 1.4384 4.0628 27 8 2.2758 2.2785 5.0887 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.2196 0.5841 -2.5453 32 1 2.1887 -2.8731 -2.5814 33 1 2.8333 -4.0861 -4.6520 34 1 3.0555 -2.8381 -6.7610 35 1 2.3451 -2.3768 4.5470 36 1 3.4683 -0.6966 2.7117 37 1 3.5114 0.7168 1.6306 38 1 1.3666 1.5135 2.5866 39 1 1.3235 0.1002 3.6676 40 1 2.8724 2.7293 5.7018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589444361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -59.448423 kcal Electronic energy + Delta-G solvation = -27680.444365 eV Core-core repulsion = 23522.688199 eV Total energy + Delta-G solvation = -4157.756166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.79783 -39.54321 -39.12689 -36.75645 -36.34836 -35.43951 -34.76371 -32.61155 -31.96951 -31.06255 -29.88454 -28.48708 -25.07255 -24.43624 -23.85961 -23.20417 -21.68315 -20.14148 -19.74974 -18.21825 -17.58291 -17.29457 -16.94906 -16.45490 -15.68698 -15.65612 -15.37903 -14.91331 -14.81294 -14.58341 -14.33056 -13.95459 -13.52960 -13.28693 -13.13118 -12.70681 -12.47668 -12.28544 -11.97365 -11.84512 -11.63546 -11.48258 -11.44491 -11.32776 -10.98663 -10.92810 -10.77435 -10.71443 -10.23428 -10.00500 -9.89240 -9.83604 -9.68202 -9.59028 -9.08113 -8.46087 -8.18431 -7.23994 -6.02406 -3.16002 0.82784 1.14509 1.70997 2.96347 2.99622 3.05717 3.41167 3.50194 3.53016 3.66710 3.78627 4.43122 4.45633 4.66277 4.85315 4.98279 5.10737 5.17299 5.24677 5.39737 5.61535 5.75974 5.85990 5.92737 6.00390 6.08973 6.18657 6.21986 6.29649 6.48024 6.52779 6.68622 6.72437 7.02604 7.30214 7.42579 7.49950 7.62440 7.78436 8.08429 8.50325 8.57261 9.01495 9.65272 10.06035 11.07454 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.003654 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.910905 B = 7661.251455 C = 9351.564835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.086 0.914 4 C 0.490 3.510 5 O -0.480 6.480 6 N -0.676 5.676 7 C 0.141 3.859 8 C -0.083 4.083 9 C -0.143 4.143 10 C 0.081 3.919 11 N -0.459 5.459 12 C 0.128 3.872 13 Cl -0.037 7.037 14 N -0.564 5.564 15 C -0.242 4.242 16 H 0.077 0.923 17 C 0.012 3.988 18 N -0.889 5.889 19 Si 0.886 3.114 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.280 1.280 23 C 0.183 3.817 24 C -0.122 4.122 25 C 0.485 3.515 26 O -0.531 6.531 27 O -0.528 6.528 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.410 0.590 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.256 0.744 36 H 0.095 0.905 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.144 0.856 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 5.892 -11.423 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 H 0.104 0.896 4 C 0.275 3.725 5 O -0.349 6.349 6 N -0.323 5.323 7 C 0.040 3.960 8 C -0.111 4.111 9 C -0.163 4.163 10 C -0.078 4.078 11 N -0.170 5.170 12 C -0.039 4.039 13 Cl -0.009 7.009 14 N -0.282 5.282 15 C -0.370 4.370 16 H 0.095 0.905 17 C -0.186 4.186 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.216 1.216 21 H -0.224 1.224 22 H -0.206 1.206 23 C 0.057 3.943 24 C -0.161 4.161 25 C 0.329 3.671 26 O -0.420 6.420 27 O -0.339 6.339 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.246 0.754 32 H 0.186 0.814 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.935 5.475 -12.098 13.600 hybrid contribution 0.391 -0.525 1.118 1.296 sum -2.545 4.950 -10.979 12.310 Atomic orbital electron populations 1.22188 0.94965 1.03036 1.00960 1.20217 0.94484 0.95135 0.85586 0.89610 1.23214 0.79381 0.85954 0.83905 1.90662 1.33872 1.24925 1.85457 1.44316 1.57485 1.26199 1.04295 1.18512 0.98822 0.91976 0.86722 1.22030 0.96707 0.91477 1.00936 1.22206 0.99386 1.01979 0.92748 1.22510 0.98726 0.88262 0.98289 1.66873 1.11287 1.09511 1.29291 1.21298 1.05100 0.87572 0.89956 1.98381 1.94498 1.09720 1.98264 1.43963 1.56285 1.10277 1.17679 1.18965 1.32772 0.84636 1.00627 0.90527 1.24539 1.01792 0.97827 0.94473 1.70054 1.48807 1.36807 0.97577 0.86522 0.79260 0.86043 0.76615 1.21559 1.22364 1.20578 1.20602 0.90504 0.94239 0.88924 1.22364 1.00012 0.98354 0.95409 1.24282 0.88301 0.74769 0.79712 1.90633 1.17266 1.61166 1.72968 1.84639 1.45803 1.60753 1.42742 0.93762 0.91579 0.91297 0.75353 0.81412 0.83841 0.81996 0.93347 0.88639 0.95933 0.91221 0.83843 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.06 37.16 0.34 -1.89 16 2 C 0.16 2.71 3.17 -69.08 -0.22 2.50 16 3 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 4 C 0.49 8.51 6.79 -10.98 -0.07 8.44 16 5 O -0.48 -10.21 12.31 5.55 0.07 -10.14 16 6 N -0.68 -9.42 5.05 -9.73 -0.05 -9.47 16 7 C 0.14 2.03 6.45 -83.48 -0.54 1.49 16 8 C -0.08 -1.21 8.83 -39.11 -0.35 -1.55 16 9 C -0.14 -1.64 10.10 -39.47 -0.40 -2.04 16 10 C 0.08 0.90 11.17 -17.53 -0.20 0.71 16 11 N -0.46 -6.21 10.33 -10.21 -0.11 -6.31 16 12 C 0.13 1.76 7.29 -17.24 -0.13 1.63 16 13 Cl -0.04 -0.44 27.95 -51.86 -1.45 -1.89 16 14 N -0.56 -12.22 2.27 -166.98 -0.38 -12.60 16 15 C -0.24 -5.97 7.48 -15.06 -0.11 -6.08 16 16 H 0.08 1.94 7.29 -52.49 -0.38 1.55 16 17 C 0.01 0.30 4.66 -17.43 -0.08 0.22 16 18 N -0.89 -23.05 9.14 55.49 0.51 -22.54 16 19 Si 0.89 21.34 29.67 -169.99 -5.04 16.29 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.18 4.03 4.12 -4.04 -0.02 4.02 16 24 C -0.12 -2.38 5.71 -27.88 -0.16 -2.54 16 25 C 0.49 9.24 8.33 36.01 0.30 9.54 16 26 O -0.53 -11.55 16.74 -18.75 -0.31 -11.86 16 27 O -0.53 -8.15 13.42 -39.25 -0.53 -8.68 16 28 H 0.04 0.49 7.70 -51.93 -0.40 0.09 16 29 H 0.07 1.10 7.38 -51.93 -0.38 0.72 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.41 4.62 7.38 -40.82 -0.30 4.32 16 32 H 0.17 2.78 5.89 -52.49 -0.31 2.47 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.10 2.49 5.95 -51.93 -0.31 2.18 16 37 H 0.02 0.47 7.99 -51.93 -0.42 0.06 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.14 3.20 6.30 -51.93 -0.33 2.88 16 40 H 0.39 4.20 9.10 45.56 0.41 4.62 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -31.07 354.95 -7.22 -38.29 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.65 Total: 9.12 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -1.63 Total: 14.44 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.03 Total: -50.92 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.77 Total: -30.68 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.04 Total: 16.29 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.45 Total: -1.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.07 -7.22 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589444361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.158 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds