Wall clock time and date at job start Sat Apr 11 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46962 * 2 1 4 4 C 1.50702 * 109.47052 * 119.99929 * 2 1 3 5 5 O 1.21290 * 120.00036 * 101.36077 * 4 2 1 6 6 N 1.34775 * 119.99975 * 281.36459 * 4 2 1 7 7 C 1.40003 * 119.99790 * 185.21003 * 6 4 2 8 8 C 1.39201 * 120.49388 * 18.37276 * 7 6 4 9 9 C 1.38558 * 118.37631 * 180.29967 * 8 7 6 10 10 C 1.38223 * 119.26436 * 359.43461 * 9 8 7 11 11 N 1.31899 * 120.92896 * 0.58446 * 10 9 8 12 12 C 1.31898 * 121.77451 * 359.70949 * 11 10 9 13 13 Cl 1.73599 * 119.67804 * 179.97438 * 12 11 10 14 14 N 1.46492 * 109.47171 * 239.99819 * 2 1 3 15 15 C 1.36937 * 120.00268 * 302.69409 * 14 2 1 16 16 H 1.07997 * 119.99756 * 325.08488 * 15 14 2 17 17 C 1.38817 * 120.00350 * 145.09084 * 15 14 2 18 18 N 1.31616 * 119.99895 * 159.91362 * 17 15 14 19 19 Si 1.86799 * 119.99825 * 339.91713 * 17 15 14 20 20 H 1.48496 * 109.47298 * 95.50118 * 19 17 15 21 21 H 1.48504 * 109.46850 * 215.49778 * 19 17 15 22 22 H 1.48496 * 109.47144 * 335.49647 * 19 17 15 23 23 C 1.46502 * 120.00167 * 122.68849 * 14 2 1 24 24 C 1.52999 * 109.47113 * 89.99963 * 23 14 2 25 25 C 1.50703 * 109.46919 * 180.02562 * 24 23 14 26 26 O 1.20822 * 119.99976 * 359.97438 * 25 24 23 27 27 O 1.34235 * 119.99623 * 180.02562 * 25 24 23 28 28 H 1.08994 * 109.46768 * 65.55305 * 1 2 3 29 29 H 1.08999 * 109.46738 * 185.55388 * 1 2 3 30 30 H 1.08998 * 109.46998 * 305.54796 * 1 2 3 31 31 H 0.96993 * 120.00118 * 5.20591 * 6 4 2 32 32 H 1.08004 * 120.81134 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.36820 * 179.72218 * 9 8 7 34 34 H 1.07992 * 119.53718 * 180.29517 * 10 9 8 35 35 H 0.97002 * 119.99871 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47467 * 210.00291 * 23 14 2 37 37 H 1.09004 * 109.46809 * 329.99833 * 23 14 2 38 38 H 1.09001 * 109.47221 * 300.00478 * 24 23 14 39 39 H 1.08997 * 109.47074 * 60.00452 * 24 23 14 40 40 H 0.96698 * 116.99551 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4296 -1.8537 1.1510 6 7 2.0402 -0.0754 2.4192 7 6 2.6067 -0.6945 3.5399 8 6 3.4858 -1.7630 3.3876 9 6 4.0159 -2.3472 4.5267 10 6 3.6672 -1.8471 5.7673 11 7 2.8312 -0.8330 5.8789 12 6 2.2993 -0.2517 4.8211 13 17 1.2044 1.0790 5.0311 14 7 2.0184 -0.6906 -1.1961 15 6 1.6427 -1.9845 -1.4410 16 1 1.5027 -2.6709 -0.6191 17 6 1.4421 -2.4138 -2.7458 18 7 1.4736 -3.6990 -3.0278 19 14 1.1274 -1.1675 -4.1012 20 1 2.4049 -0.8509 -4.7889 21 1 0.1652 -1.7337 -5.0805 22 1 0.5618 0.0726 -3.5118 23 6 2.9086 0.0030 -2.1303 24 6 4.3631 -0.2279 -1.7155 25 6 5.2787 0.4861 -2.6762 26 8 4.8155 1.1147 -3.5982 27 8 6.6090 0.4229 -2.5080 28 1 -0.3632 0.4253 -0.9355 29 1 -0.3633 -1.0229 0.0995 30 1 -0.3633 0.5975 0.8361 31 1 1.6533 0.8105 2.4984 32 1 3.7449 -2.1307 2.4056 33 1 4.6976 -3.1810 4.4461 34 1 4.0815 -2.2959 6.6578 35 1 1.3338 -3.9991 -3.9396 36 1 2.7520 -0.3845 -3.1370 37 1 2.6913 1.0710 -2.1142 38 1 4.5197 0.1595 -0.7088 39 1 4.5804 -1.2959 -1.7317 40 1 7.1556 0.8967 -3.1498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589444366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:00 Heat of formation + Delta-G solvation = -56.018088 kcal Electronic energy + Delta-G solvation = -27873.209835 eV Core-core repulsion = 23715.602420 eV Total energy + Delta-G solvation = -4157.607415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86463 -39.96734 -39.22325 -36.78428 -36.58074 -35.80613 -34.82259 -32.55273 -31.94079 -31.83393 -29.99952 -28.75001 -25.10067 -24.62766 -23.98945 -23.40002 -21.75629 -20.66254 -19.77292 -18.24144 -17.91411 -17.27523 -17.10211 -16.51013 -16.21488 -15.97257 -15.58985 -15.12555 -15.03084 -14.66773 -14.36456 -14.14148 -13.81590 -13.34111 -13.12260 -12.96431 -12.64625 -12.48078 -12.30244 -11.93781 -11.87116 -11.68949 -11.51086 -11.46619 -11.32762 -11.22979 -10.97729 -10.70594 -10.53938 -10.29022 -10.06877 -9.83102 -9.62596 -9.51555 -9.10146 -8.61679 -8.20475 -7.14423 -6.02029 -3.49177 0.81635 1.14309 1.68809 2.49638 2.91698 2.97782 3.29681 3.35212 3.45904 3.46294 3.65628 4.44362 4.45026 4.60756 4.66365 4.84607 5.01002 5.15464 5.23522 5.33428 5.44259 5.45127 5.52689 5.67156 5.83428 5.88537 6.00762 6.04410 6.10166 6.19762 6.33555 6.38472 6.52794 6.66988 6.73403 6.77572 7.38658 7.61506 7.85178 8.14372 8.20985 8.50517 8.90996 9.61657 9.87681 11.11419 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.003726 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.189304 B = 7513.249949 C = 8182.662569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.161 3.839 3 H 0.082 0.918 4 C 0.491 3.509 5 O -0.475 6.475 6 N -0.674 5.674 7 C 0.140 3.860 8 C -0.092 4.092 9 C -0.141 4.141 10 C 0.079 3.921 11 N -0.458 5.458 12 C 0.126 3.874 13 Cl -0.038 7.038 14 N -0.576 5.576 15 C -0.267 4.267 16 H 0.103 0.897 17 C 0.038 3.962 18 N -0.894 5.894 19 Si 0.870 3.130 20 H -0.282 1.282 21 H -0.302 1.302 22 H -0.268 1.268 23 C 0.145 3.855 24 C -0.132 4.132 25 C 0.479 3.521 26 O -0.522 6.522 27 O -0.522 6.522 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.410 0.590 32 H 0.179 0.821 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.264 0.736 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 9.186 12.652 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.049 3.951 3 H 0.100 0.900 4 C 0.278 3.722 5 O -0.345 6.345 6 N -0.320 5.320 7 C 0.039 3.961 8 C -0.120 4.120 9 C -0.162 4.162 10 C -0.079 4.079 11 N -0.169 5.169 12 C -0.042 4.042 13 Cl -0.009 7.009 14 N -0.295 5.295 15 C -0.395 4.395 16 H 0.120 0.880 17 C -0.162 4.162 18 N -0.535 5.535 19 Si 0.701 3.299 20 H -0.210 1.210 21 H -0.230 1.230 22 H -0.193 1.193 23 C 0.019 3.981 24 C -0.172 4.172 25 C 0.322 3.678 26 O -0.411 6.411 27 O -0.334 6.334 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.247 0.753 32 H 0.196 0.804 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 4.731 8.592 13.174 16.424 hybrid contribution 0.233 1.127 -1.908 2.228 sum 4.964 9.719 11.266 15.685 Atomic orbital electron populations 1.22040 0.93961 1.03306 1.01423 1.20278 0.95038 0.94368 0.85407 0.90025 1.23024 0.77578 0.87696 0.83947 1.90616 1.42875 1.16793 1.84186 1.44246 1.58968 1.21027 1.07772 1.18538 0.95157 0.96047 0.86365 1.22364 0.93238 0.93964 1.02463 1.22243 1.00413 1.00787 0.92708 1.22523 0.95052 0.92562 0.97808 1.66872 1.08974 1.09249 1.31770 1.21239 0.98815 0.95644 0.88466 1.98380 1.60939 1.44039 1.97579 1.44054 1.50305 1.13455 1.21718 1.19047 1.42419 0.84236 0.93765 0.87997 1.25404 0.98202 0.95236 0.97402 1.69833 1.50261 1.13626 1.19748 0.87087 0.77650 0.82541 0.82663 1.21021 1.23044 1.19341 1.21245 0.85937 0.96077 0.94853 1.22260 0.95016 1.02788 0.97152 1.24101 0.81052 0.77785 0.84895 1.90687 1.76832 1.40904 1.32665 1.84619 1.20055 1.71413 1.57284 0.91251 0.90972 0.93414 0.75338 0.80405 0.83784 0.82020 0.92618 0.91291 0.92773 0.88886 0.86647 0.74148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.01 37.16 0.33 -1.98 16 2 C 0.16 2.66 3.16 -69.08 -0.22 2.44 16 3 H 0.08 1.08 7.78 -51.93 -0.40 0.67 16 4 C 0.49 8.11 6.91 -10.99 -0.08 8.03 16 5 O -0.47 -9.62 11.16 5.55 0.06 -9.55 16 6 N -0.67 -8.95 5.27 -9.73 -0.05 -9.00 16 7 C 0.14 1.94 6.54 -83.48 -0.55 1.40 16 8 C -0.09 -1.29 8.91 -39.11 -0.35 -1.64 16 9 C -0.14 -1.57 10.10 -39.47 -0.40 -1.97 16 10 C 0.08 0.86 11.18 -17.53 -0.20 0.67 16 11 N -0.46 -6.06 10.33 -10.21 -0.11 -6.16 16 12 C 0.13 1.68 7.29 -17.24 -0.13 1.55 16 13 Cl -0.04 -0.43 27.87 -51.86 -1.45 -1.88 16 14 N -0.58 -11.99 1.99 -166.98 -0.33 -12.33 16 15 C -0.27 -6.81 8.29 -15.06 -0.12 -6.94 16 16 H 0.10 2.93 6.43 -52.49 -0.34 2.59 16 17 C 0.04 1.04 5.36 -17.43 -0.09 0.95 16 18 N -0.89 -26.34 13.97 55.49 0.78 -25.56 16 19 Si 0.87 21.45 24.76 -169.99 -4.21 17.24 16 20 H -0.28 -7.09 6.72 56.52 0.38 -6.71 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.27 -6.31 7.08 56.52 0.40 -5.91 16 23 C 0.14 2.89 3.74 -4.04 -0.02 2.87 16 24 C -0.13 -2.29 6.14 -27.88 -0.17 -2.46 16 25 C 0.48 7.96 8.33 36.01 0.30 8.26 16 26 O -0.52 -10.15 16.74 -18.75 -0.31 -10.46 16 27 O -0.52 -6.87 13.42 -39.27 -0.53 -7.40 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.31 7.79 -51.93 -0.40 0.90 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.41 4.38 7.62 -40.82 -0.31 4.07 16 32 H 0.18 2.84 5.45 -52.48 -0.29 2.55 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 1.60 2.69 -51.93 -0.14 1.46 16 37 H 0.05 0.97 7.86 -51.93 -0.41 0.57 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.12 2.20 8.14 -51.93 -0.42 1.78 16 40 H 0.40 3.38 9.10 45.56 0.41 3.80 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -33.51 353.07 -6.08 -39.59 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.57 Total: 9.01 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.68 Total: 11.19 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.29 Total: -53.06 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.78 Total: -27.41 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.21 Total: 17.24 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.45 Total: -1.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.51 -6.08 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589444366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.433 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds