Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46962 * 2 1 4 4 C 1.50702 * 109.47052 * 119.99929 * 2 1 3 5 5 O 1.21290 * 120.00036 * 101.36077 * 4 2 1 6 6 N 1.34775 * 119.99975 * 281.36459 * 4 2 1 7 7 C 1.40003 * 119.99790 * 185.21003 * 6 4 2 8 8 C 1.39201 * 120.49388 * 18.37276 * 7 6 4 9 9 C 1.38558 * 118.37631 * 180.29967 * 8 7 6 10 10 C 1.38223 * 119.26436 * 359.43461 * 9 8 7 11 11 N 1.31899 * 120.92896 * 0.58446 * 10 9 8 12 12 C 1.31898 * 121.77451 * 359.70949 * 11 10 9 13 13 Cl 1.73599 * 119.67804 * 179.97438 * 12 11 10 14 14 N 1.46492 * 109.47171 * 239.99819 * 2 1 3 15 15 C 1.36937 * 120.00268 * 302.69409 * 14 2 1 16 16 H 1.07997 * 119.99756 * 325.08488 * 15 14 2 17 17 C 1.38817 * 120.00350 * 145.09084 * 15 14 2 18 18 N 1.31616 * 119.99895 * 159.91362 * 17 15 14 19 19 Si 1.86799 * 119.99825 * 339.91713 * 17 15 14 20 20 H 1.48496 * 109.47298 * 95.50118 * 19 17 15 21 21 H 1.48504 * 109.46850 * 215.49778 * 19 17 15 22 22 H 1.48496 * 109.47144 * 335.49647 * 19 17 15 23 23 C 1.46502 * 120.00167 * 122.68849 * 14 2 1 24 24 C 1.52999 * 109.47113 * 89.99963 * 23 14 2 25 25 C 1.50703 * 109.46919 * 180.02562 * 24 23 14 26 26 O 1.20822 * 119.99976 * 359.97438 * 25 24 23 27 27 O 1.34235 * 119.99623 * 180.02562 * 25 24 23 28 28 H 1.08994 * 109.46768 * 65.55305 * 1 2 3 29 29 H 1.08999 * 109.46738 * 185.55388 * 1 2 3 30 30 H 1.08998 * 109.46998 * 305.54796 * 1 2 3 31 31 H 0.96993 * 120.00118 * 5.20591 * 6 4 2 32 32 H 1.08004 * 120.81134 * 0.02562 * 8 7 6 33 33 H 1.08001 * 120.36820 * 179.72218 * 9 8 7 34 34 H 1.07992 * 119.53718 * 180.29517 * 10 9 8 35 35 H 0.97002 * 119.99871 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.47467 * 210.00291 * 23 14 2 37 37 H 1.09004 * 109.46809 * 329.99833 * 23 14 2 38 38 H 1.09001 * 109.47221 * 300.00478 * 24 23 14 39 39 H 1.08997 * 109.47074 * 60.00452 * 24 23 14 40 40 H 0.96698 * 116.99551 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4296 -1.8537 1.1510 6 7 2.0402 -0.0754 2.4192 7 6 2.6067 -0.6945 3.5399 8 6 3.4858 -1.7630 3.3876 9 6 4.0159 -2.3472 4.5267 10 6 3.6672 -1.8471 5.7673 11 7 2.8312 -0.8330 5.8789 12 6 2.2993 -0.2517 4.8211 13 17 1.2044 1.0790 5.0311 14 7 2.0184 -0.6906 -1.1961 15 6 1.6427 -1.9845 -1.4410 16 1 1.5027 -2.6709 -0.6191 17 6 1.4421 -2.4138 -2.7458 18 7 1.4736 -3.6990 -3.0278 19 14 1.1274 -1.1675 -4.1012 20 1 2.4049 -0.8509 -4.7889 21 1 0.1652 -1.7337 -5.0805 22 1 0.5618 0.0726 -3.5118 23 6 2.9086 0.0030 -2.1303 24 6 4.3631 -0.2279 -1.7155 25 6 5.2787 0.4861 -2.6762 26 8 4.8155 1.1147 -3.5982 27 8 6.6090 0.4229 -2.5080 28 1 -0.3632 0.4253 -0.9355 29 1 -0.3633 -1.0229 0.0995 30 1 -0.3633 0.5975 0.8361 31 1 1.6533 0.8105 2.4984 32 1 3.7449 -2.1307 2.4056 33 1 4.6976 -3.1810 4.4461 34 1 4.0815 -2.2959 6.6578 35 1 1.3338 -3.9991 -3.9396 36 1 2.7520 -0.3845 -3.1370 37 1 2.6913 1.0710 -2.1142 38 1 4.5197 0.1595 -0.7088 39 1 4.5804 -1.2959 -1.7317 40 1 7.1556 0.8967 -3.1498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589444366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -81.197755 kcal Electronic energy + Delta-G solvation = -27874.301707 eV Core-core repulsion = 23715.602420 eV Total energy + Delta-G solvation = -4158.699287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97656 -41.26724 -40.41038 -38.06690 -37.71962 -37.07554 -36.05689 -34.08885 -33.59184 -32.96643 -31.21219 -30.16081 -26.77987 -25.95519 -25.13894 -24.54068 -23.09197 -22.02869 -21.13692 -19.53833 -19.18780 -18.44164 -18.25707 -17.89023 -17.72870 -17.36394 -16.80851 -16.65200 -16.25583 -15.92084 -15.49528 -15.32750 -15.22200 -14.83958 -14.52516 -14.36771 -14.11869 -13.84243 -13.54021 -13.41104 -13.11291 -12.94193 -12.81353 -12.78459 -12.55649 -12.40589 -12.37694 -12.21523 -12.09841 -11.79025 -11.66526 -11.36296 -11.07350 -10.70397 -10.61161 -10.28744 -9.25159 -8.91816 -8.10862 -5.52541 -0.15154 0.13334 0.73135 1.18376 1.35460 1.43011 1.50507 1.67335 1.84300 2.10887 2.44259 2.68413 3.11562 3.25409 3.51887 3.63939 3.77071 3.98370 4.03532 4.09837 4.18635 4.24958 4.37181 4.40404 4.50849 4.61337 4.83181 4.85812 4.89055 5.01450 5.07383 5.17212 5.19626 5.46805 5.58486 5.63905 5.95212 6.25919 6.38903 6.67462 6.92801 7.00952 7.20110 7.62821 7.94943 9.07375 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.003726 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.189304 B = 7513.249949 C = 8182.662569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.154 3.846 3 H 0.128 0.872 4 C 0.497 3.503 5 O -0.520 6.520 6 N -0.657 5.657 7 C 0.123 3.877 8 C -0.111 4.111 9 C -0.134 4.134 10 C 0.088 3.912 11 N -0.475 5.475 12 C 0.121 3.879 13 Cl -0.024 7.024 14 N -0.587 5.587 15 C -0.226 4.226 16 H 0.063 0.937 17 C -0.020 4.020 18 N -0.950 5.950 19 Si 0.930 3.070 20 H -0.292 1.292 21 H -0.318 1.318 22 H -0.246 1.246 23 C 0.140 3.860 24 C -0.125 4.125 25 C 0.490 3.510 26 O -0.552 6.552 27 O -0.511 6.511 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.423 0.577 32 H 0.155 0.845 33 H 0.172 0.828 34 H 0.201 0.799 35 H 0.258 0.742 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 11.887 14.775 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.043 3.957 3 H 0.146 0.854 4 C 0.284 3.716 5 O -0.393 6.393 6 N -0.305 5.305 7 C 0.022 3.978 8 C -0.139 4.139 9 C -0.154 4.154 10 C -0.070 4.070 11 N -0.186 5.186 12 C -0.046 4.046 13 Cl 0.004 6.996 14 N -0.307 5.307 15 C -0.355 4.355 16 H 0.081 0.919 17 C -0.215 4.215 18 N -0.595 5.595 19 Si 0.761 3.239 20 H -0.221 1.221 21 H -0.248 1.248 22 H -0.169 1.169 23 C 0.015 3.985 24 C -0.165 4.165 25 C 0.334 3.666 26 O -0.443 6.443 27 O -0.325 6.325 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.263 0.737 32 H 0.172 0.828 33 H 0.189 0.811 34 H 0.217 0.783 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.110 0.890 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 5.627 11.390 15.358 19.932 hybrid contribution 0.098 0.310 -2.324 2.347 sum 5.725 11.701 13.034 18.427 Atomic orbital electron populations 1.22006 0.93122 1.01992 1.03175 1.20651 0.95710 0.96063 0.83253 0.85439 1.22770 0.76956 0.87041 0.84798 1.90635 1.45053 1.18676 1.84982 1.43853 1.58463 1.21299 1.06840 1.18569 0.95961 0.96659 0.86603 1.22301 0.94345 0.94764 1.02495 1.22547 1.00026 1.00932 0.91922 1.23175 0.93554 0.91344 0.98970 1.66988 1.09742 1.10138 1.31705 1.21323 0.99010 0.96057 0.88219 1.98380 1.60423 1.43266 1.97527 1.44060 1.51253 1.12206 1.23210 1.18740 1.38919 0.85787 0.92102 0.91920 1.25900 0.99770 0.96254 0.99607 1.69968 1.54147 1.15637 1.19787 0.86112 0.76526 0.81239 0.80021 1.22080 1.24770 1.16933 1.21214 0.87222 0.97098 0.92934 1.22006 0.94042 1.01642 0.98860 1.23704 0.81969 0.76985 0.83930 1.90687 1.77609 1.42336 1.33638 1.84540 1.18599 1.71366 1.57947 0.91535 0.94393 0.89030 0.73715 0.82761 0.81093 0.78273 0.93249 0.94461 0.89926 0.86241 0.88995 0.71331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.01 71.98 0.65 -3.56 16 2 C 0.15 4.75 3.16 44.25 0.14 4.89 16 3 H 0.13 2.80 7.78 -2.39 -0.02 2.78 16 4 C 0.50 15.98 6.91 87.66 0.61 16.58 16 5 O -0.52 -21.60 11.16 -3.06 -0.03 -21.63 16 6 N -0.66 -16.31 5.27 -303.09 -1.60 -17.91 16 7 C 0.12 3.24 6.54 38.25 0.25 3.49 16 8 C -0.11 -3.03 8.91 22.58 0.20 -2.82 16 9 C -0.13 -2.71 10.10 22.34 0.23 -2.49 16 10 C 0.09 1.65 11.18 84.68 0.95 2.60 16 11 N -0.47 -11.40 10.33 -186.21 -1.92 -13.33 16 12 C 0.12 2.98 7.29 84.87 0.62 3.60 16 13 Cl -0.02 -0.50 27.87 -2.72 -0.08 -0.58 16 14 N -0.59 -24.04 1.99 -682.20 -1.36 -25.40 16 15 C -0.23 -11.87 8.29 84.03 0.70 -11.17 16 16 H 0.06 3.81 6.43 -2.91 -0.02 3.79 16 17 C -0.02 -1.13 5.36 84.86 0.45 -0.68 16 18 N -0.95 -58.97 13.97 21.65 0.30 -58.67 16 19 Si 0.93 45.79 24.76 68.60 1.70 47.49 16 20 H -0.29 -14.67 6.72 99.48 0.67 -14.01 16 21 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 22 H -0.25 -10.96 7.08 99.48 0.70 -10.25 16 23 C 0.14 5.39 3.74 86.38 0.32 5.72 16 24 C -0.13 -4.19 6.14 29.85 0.18 -4.00 16 25 C 0.49 15.32 8.33 71.24 0.59 15.92 16 26 O -0.55 -20.42 16.74 21.97 0.37 -20.05 16 27 O -0.51 -12.08 13.42 -51.46 -0.69 -12.77 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.36 7.79 -2.39 -0.02 1.34 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.42 7.85 7.62 -92.71 -0.71 7.14 16 32 H 0.16 5.06 5.45 -2.91 -0.02 5.05 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.04 1.70 2.69 -2.39 -0.01 1.70 16 37 H 0.08 2.70 7.86 -2.39 -0.02 2.68 16 38 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.09 3.54 8.14 -2.39 -0.02 3.53 16 40 H 0.43 5.86 9.10 -74.06 -0.67 5.19 16 Total: -1.00 -77.40 353.07 2.28 -75.12 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.29 Total: 19.66 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: 5.89 Total: 28.07 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -4.58 Total: -115.30 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.36 Total: -54.46 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.70 Total: 47.49 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -77.40 2.28 -75.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589444366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.078 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds