Wall clock time and date at job start Sat Apr 11 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47218 * 2 1 4 4 C 1.50697 * 109.47330 * 120.00361 * 2 1 3 5 5 O 1.20826 * 120.00086 * 102.43720 * 4 2 1 6 6 O 1.34233 * 119.99860 * 282.43607 * 4 2 1 7 7 N 1.46502 * 109.47205 * 240.00329 * 2 1 3 8 8 C 1.46500 * 119.99839 * 305.95373 * 7 2 1 9 9 C 1.53002 * 109.47360 * 97.15605 * 8 7 2 10 10 F 1.39901 * 109.46938 * 306.62346 * 9 8 7 11 11 F 1.39895 * 109.47210 * 66.62407 * 9 8 7 12 12 S 1.65601 * 120.00244 * 125.94763 * 7 2 1 13 13 O 1.42106 * 104.27764 * 153.92922 * 12 7 2 14 14 O 1.42104 * 104.27610 * 26.07407 * 12 7 2 15 15 C 1.81395 * 104.45371 * 270.00298 * 12 7 2 16 16 C 1.52996 * 109.47559 * 183.76899 * 15 12 7 17 17 C 1.50706 * 115.54878 * 305.32494 * 16 15 12 18 18 H 1.08003 * 119.99954 * 116.13503 * 17 16 15 19 19 C 1.37878 * 119.99562 * 295.85850 * 17 16 15 20 20 N 1.31518 * 119.99848 * 174.91201 * 19 17 16 21 21 Si 1.86795 * 120.00343 * 354.90888 * 19 17 16 22 22 H 1.48497 * 109.47159 * 93.80993 * 21 19 17 23 23 H 1.48505 * 109.47382 * 213.81204 * 21 19 17 24 24 H 1.48502 * 109.47226 * 333.81118 * 21 19 17 25 25 C 1.53002 * 117.49782 * 90.99003 * 16 15 12 26 26 C 1.53004 * 117.50191 * 159.65175 * 16 15 12 27 27 H 1.08999 * 109.47113 * 299.99620 * 1 2 3 28 28 H 1.09003 * 109.47001 * 59.99435 * 1 2 3 29 29 H 1.08993 * 109.47200 * 179.97438 * 1 2 3 30 30 H 0.96701 * 116.99747 * 180.02562 * 6 4 2 31 31 H 1.09007 * 109.47066 * 217.15184 * 8 7 2 32 32 H 1.08999 * 109.47326 * 337.14887 * 8 7 2 33 33 H 1.09000 * 109.47062 * 186.62527 * 9 8 7 34 34 H 1.09000 * 109.46861 * 63.76652 * 15 12 7 35 35 H 1.09000 * 109.47273 * 303.77171 * 15 12 7 36 36 H 0.96996 * 120.00149 * 179.97438 * 20 19 17 37 37 H 1.08997 * 117.49892 * 215.00450 * 25 16 15 38 38 H 1.08991 * 117.49789 * 0.02752 * 25 16 15 39 39 H 1.08995 * 117.49328 * 359.97438 * 26 16 15 40 40 H 1.08992 * 117.49733 * 144.97545 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4462 -1.8426 1.1476 6 8 2.0201 -0.0855 2.4183 7 7 2.0183 -0.6905 -1.1962 8 6 1.5602 -2.0494 -1.4959 9 6 0.4099 -1.9894 -2.5030 10 9 -0.5833 -1.1276 -2.0257 11 9 0.8882 -1.5159 -3.7295 12 16 3.0881 0.0649 -2.2097 13 8 3.7912 -1.0004 -2.8343 14 8 3.7617 0.9978 -1.3759 15 6 2.0399 0.9276 -3.4128 16 6 2.9208 1.5953 -4.4707 17 6 3.9833 2.5231 -3.9403 18 1 5.0273 2.2913 -4.0917 19 6 3.6226 3.6708 -3.2667 20 7 4.5464 4.4286 -2.7172 21 14 1.8218 4.1495 -3.1348 22 1 1.2612 3.6221 -1.8648 23 1 1.7004 5.6294 -3.1526 24 1 1.0722 3.5774 -4.2820 25 6 3.2517 0.7870 -5.7270 26 6 2.2689 1.9580 -5.8065 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.3526 -0.5816 3.1788 31 1 2.3834 -2.6255 -1.9185 32 1 1.2156 -2.5272 -0.5788 33 1 -0.0082 -2.9871 -2.6368 34 1 1.4483 1.6866 -2.9009 35 1 1.3739 0.2114 -3.8940 36 1 4.2927 5.2362 -2.2436 37 1 4.2378 0.9264 -6.1698 38 1 2.8415 -0.2201 -5.8000 39 1 1.2125 1.7205 -5.9318 40 1 2.6082 2.8678 -6.3015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589487031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:06 Heat of formation + Delta-G solvation = -211.838488 kcal Electronic energy + Delta-G solvation = -31210.518233 eV Core-core repulsion = 26597.508458 eV Total energy + Delta-G solvation = -4613.009775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.21201 -47.20624 -40.48117 -37.12890 -36.97782 -36.45783 -35.89123 -35.15195 -32.17521 -31.89244 -28.75478 -28.45431 -25.53200 -25.19989 -23.21655 -21.58314 -21.28261 -19.37144 -18.77288 -18.23761 -17.70410 -17.64028 -17.39299 -17.11342 -16.53768 -16.10074 -15.77418 -15.54273 -15.19888 -14.81139 -14.34818 -14.18883 -13.82408 -13.73260 -13.45771 -13.15911 -13.10307 -12.84506 -12.64403 -12.42340 -12.28285 -12.15532 -11.69841 -11.63232 -11.43765 -11.37699 -11.27315 -11.12280 -11.04541 -10.77051 -10.63153 -10.51211 -10.41564 -10.11896 -9.61813 -9.27690 -9.05112 -8.72708 -8.39618 -6.15435 -4.22338 0.76917 2.08227 2.80699 3.05973 3.14904 3.30163 3.37164 3.65263 4.07573 4.26978 4.34979 4.42430 4.47269 4.63623 4.79629 4.83328 4.89344 5.00792 5.14633 5.15566 5.39251 5.46440 5.53587 5.58120 5.66775 5.86603 6.02333 6.09476 6.12327 6.32128 6.37148 6.40903 6.51909 6.64987 6.88795 7.13030 7.62180 7.78912 8.40739 8.88949 9.46297 10.96405 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.006671 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.449287 B = 4196.544165 C = 4988.612128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.140 0.860 4 C 0.478 3.522 5 O -0.509 6.509 6 O -0.511 6.511 7 N -0.992 5.992 8 C 0.069 3.931 9 C 0.228 3.772 10 F -0.195 7.195 11 F -0.196 7.196 12 S 2.606 3.394 13 O -0.952 6.952 14 O -0.921 6.921 15 C -0.591 4.591 16 C 0.004 3.996 17 C -0.522 4.522 18 H 0.086 0.914 19 C 0.100 3.900 20 N -0.872 5.872 21 Si 0.850 3.150 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.244 1.244 25 C -0.177 4.177 26 C -0.176 4.176 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.409 0.591 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.268 0.732 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 -12.465 5.845 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.157 0.843 4 C 0.318 3.682 5 O -0.397 6.397 6 O -0.322 6.322 7 N -0.825 5.825 8 C -0.058 4.058 9 C 0.173 3.827 10 F -0.176 7.176 11 F -0.177 7.177 12 S 2.704 3.296 13 O -0.943 6.943 14 O -0.911 6.911 15 C -0.723 4.723 16 C 0.002 3.998 17 C -0.559 4.559 18 H 0.104 0.896 19 C -0.106 4.106 20 N -0.506 5.506 21 Si 0.676 3.324 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.168 1.168 25 C -0.214 4.214 26 C -0.216 4.216 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.268 0.732 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.931 -12.409 5.714 18.138 hybrid contribution -1.394 0.360 0.446 1.507 sum -13.325 -12.049 6.160 18.992 Atomic orbital electron populations 1.22560 0.90730 1.04120 1.04491 1.20354 0.96950 0.97667 0.80531 0.84289 1.23900 0.74380 0.85119 0.84803 1.90660 1.43483 1.19505 1.86005 1.84558 1.78505 1.50315 1.18774 1.58252 1.65328 1.23948 1.35009 1.22552 0.97319 0.85644 1.00282 1.22844 0.87259 0.92131 0.80487 1.92995 1.63559 1.73350 1.87737 1.92870 1.88845 1.89588 1.46432 1.05483 0.74649 0.74370 0.75116 1.93490 1.68851 1.54488 1.77464 1.93618 1.69085 1.63436 1.64952 1.30614 1.13956 1.12287 1.15430 1.18774 0.96871 0.99228 0.84962 1.20401 0.92471 1.05612 1.37371 0.89645 1.24849 0.96935 0.95601 0.93232 1.69863 1.33310 1.14405 1.33002 0.87268 0.87018 0.78440 0.79677 1.20044 1.21084 1.16781 1.22932 1.00311 0.94746 1.03412 1.23037 0.95985 0.99021 1.03509 0.90672 0.89067 0.90765 0.73199 0.85832 0.86115 0.85859 0.87028 0.84668 0.92243 0.89029 0.90145 0.91042 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 7.51 37.16 0.28 -1.45 16 2 C 0.15 2.20 3.00 -69.08 -0.21 2.00 16 3 H 0.14 2.18 7.00 -51.93 -0.36 1.81 16 4 C 0.48 6.58 7.49 36.00 0.27 6.85 16 5 O -0.51 -7.80 15.29 -18.75 -0.29 -8.08 16 6 O -0.51 -5.59 13.42 -39.27 -0.53 -6.12 16 7 N -0.99 -15.86 2.40 -108.53 -0.26 -16.12 16 8 C 0.07 0.84 4.63 -4.04 -0.02 0.82 16 9 C 0.23 2.33 5.62 37.16 0.21 2.54 16 10 F -0.20 -2.10 12.24 2.25 0.03 -2.07 16 11 F -0.20 -2.64 13.30 2.25 0.03 -2.61 16 12 S 2.61 55.59 4.51 -107.50 -0.49 55.10 16 13 O -0.95 -21.47 16.66 -57.54 -0.96 -22.43 16 14 O -0.92 -23.25 15.84 -57.54 -0.91 -24.16 16 15 C -0.59 -12.26 5.48 37.16 0.20 -12.06 16 16 C 0.00 0.10 0.92 -155.66 -0.14 -0.04 16 17 C -0.52 -14.68 8.03 -34.44 -0.28 -14.96 16 18 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 19 C 0.10 2.87 5.47 -17.82 -0.10 2.77 16 20 N -0.87 -26.56 13.96 55.43 0.77 -25.78 16 21 Si 0.85 20.55 24.84 -169.99 -4.22 16.32 16 22 H -0.27 -6.24 7.08 56.52 0.40 -5.84 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.24 -5.48 5.82 56.52 0.33 -5.15 16 25 C -0.18 -3.70 9.93 -26.69 -0.26 -3.96 16 26 C -0.18 -3.69 8.23 -26.69 -0.22 -3.91 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.02 6.73 -51.93 -0.35 0.67 16 29 H 0.07 0.68 6.13 -51.93 -0.32 0.36 16 30 H 0.41 2.56 9.10 45.56 0.41 2.98 16 31 H 0.12 1.55 7.10 -51.93 -0.37 1.18 16 32 H 0.12 1.22 6.20 -51.93 -0.32 0.90 16 33 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 2.28 4.94 -51.92 -0.26 2.02 16 35 H 0.14 2.41 4.58 -51.92 -0.24 2.17 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -36.69 335.77 -6.00 -42.68 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -3.97 Total: 9.60 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -0.27 Total: -21.39 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.51 Total: -41.90 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -2.68 Total: -60.80 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.06 Total: -4.68 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.22 Total: 16.32 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.49 Total: 55.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.69 -6.00 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589487031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.155 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds