Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47218 * 2 1 4 4 C 1.50697 * 109.47330 * 120.00361 * 2 1 3 5 5 O 1.20826 * 120.00086 * 102.43720 * 4 2 1 6 6 O 1.34233 * 119.99860 * 282.43607 * 4 2 1 7 7 N 1.46502 * 109.47205 * 240.00329 * 2 1 3 8 8 C 1.46500 * 119.99839 * 305.95373 * 7 2 1 9 9 C 1.53002 * 109.47360 * 97.15605 * 8 7 2 10 10 F 1.39901 * 109.46938 * 306.62346 * 9 8 7 11 11 F 1.39895 * 109.47210 * 66.62407 * 9 8 7 12 12 S 1.65601 * 120.00244 * 125.94763 * 7 2 1 13 13 O 1.42106 * 104.27764 * 153.92922 * 12 7 2 14 14 O 1.42104 * 104.27610 * 26.07407 * 12 7 2 15 15 C 1.81395 * 104.45371 * 270.00298 * 12 7 2 16 16 C 1.52996 * 109.47559 * 183.76899 * 15 12 7 17 17 C 1.50706 * 115.54878 * 305.32494 * 16 15 12 18 18 H 1.08003 * 119.99954 * 116.13503 * 17 16 15 19 19 C 1.37878 * 119.99562 * 295.85850 * 17 16 15 20 20 N 1.31518 * 119.99848 * 174.91201 * 19 17 16 21 21 Si 1.86795 * 120.00343 * 354.90888 * 19 17 16 22 22 H 1.48497 * 109.47159 * 93.80993 * 21 19 17 23 23 H 1.48505 * 109.47382 * 213.81204 * 21 19 17 24 24 H 1.48502 * 109.47226 * 333.81118 * 21 19 17 25 25 C 1.53002 * 117.49782 * 90.99003 * 16 15 12 26 26 C 1.53004 * 117.50191 * 159.65175 * 16 15 12 27 27 H 1.08999 * 109.47113 * 299.99620 * 1 2 3 28 28 H 1.09003 * 109.47001 * 59.99435 * 1 2 3 29 29 H 1.08993 * 109.47200 * 179.97438 * 1 2 3 30 30 H 0.96701 * 116.99747 * 180.02562 * 6 4 2 31 31 H 1.09007 * 109.47066 * 217.15184 * 8 7 2 32 32 H 1.08999 * 109.47326 * 337.14887 * 8 7 2 33 33 H 1.09000 * 109.47062 * 186.62527 * 9 8 7 34 34 H 1.09000 * 109.46861 * 63.76652 * 15 12 7 35 35 H 1.09000 * 109.47273 * 303.77171 * 15 12 7 36 36 H 0.96996 * 120.00149 * 179.97438 * 20 19 17 37 37 H 1.08997 * 117.49892 * 215.00450 * 25 16 15 38 38 H 1.08991 * 117.49789 * 0.02752 * 25 16 15 39 39 H 1.08995 * 117.49328 * 359.97438 * 26 16 15 40 40 H 1.08992 * 117.49733 * 144.97545 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4462 -1.8426 1.1476 6 8 2.0201 -0.0855 2.4183 7 7 2.0183 -0.6905 -1.1962 8 6 1.5602 -2.0494 -1.4959 9 6 0.4099 -1.9894 -2.5030 10 9 -0.5833 -1.1276 -2.0257 11 9 0.8882 -1.5159 -3.7295 12 16 3.0881 0.0649 -2.2097 13 8 3.7912 -1.0004 -2.8343 14 8 3.7617 0.9978 -1.3759 15 6 2.0399 0.9276 -3.4128 16 6 2.9208 1.5953 -4.4707 17 6 3.9833 2.5231 -3.9403 18 1 5.0273 2.2913 -4.0917 19 6 3.6226 3.6708 -3.2667 20 7 4.5464 4.4286 -2.7172 21 14 1.8218 4.1495 -3.1348 22 1 1.2612 3.6221 -1.8648 23 1 1.7004 5.6294 -3.1526 24 1 1.0722 3.5774 -4.2820 25 6 3.2517 0.7870 -5.7270 26 6 2.2689 1.9580 -5.8065 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.3526 -0.5816 3.1788 31 1 2.3834 -2.6255 -1.9185 32 1 1.2156 -2.5272 -0.5788 33 1 -0.0082 -2.9871 -2.6368 34 1 1.4483 1.6866 -2.9009 35 1 1.3739 0.2114 -3.8940 36 1 4.2927 5.2362 -2.2436 37 1 4.2378 0.9264 -6.1698 38 1 2.8415 -0.2201 -5.8000 39 1 1.2125 1.7205 -5.9318 40 1 2.6082 2.8678 -6.3015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589487031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -241.588298 kcal Electronic energy + Delta-G solvation = -31211.808281 eV Core-core repulsion = 26597.508458 eV Total energy + Delta-G solvation = -4614.299823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.03685 -48.03405 -41.52365 -38.80256 -38.19329 -38.12276 -36.98891 -36.84693 -34.31875 -32.84449 -30.27560 -29.60178 -27.57572 -26.18562 -24.14387 -23.25108 -22.43138 -21.17618 -20.07681 -19.41953 -18.96910 -18.68543 -18.55641 -18.23925 -18.07945 -17.14013 -17.02605 -17.01900 -16.66955 -16.44116 -15.74869 -15.47458 -15.20531 -14.89126 -14.66874 -14.54074 -14.31624 -14.18016 -14.05662 -13.69812 -13.56148 -13.24368 -13.17006 -12.98951 -12.88230 -12.82598 -12.67231 -12.57108 -12.39793 -12.28267 -12.18997 -12.11162 -11.82871 -11.57029 -11.51576 -10.94639 -10.70028 -10.50040 -10.15768 -8.32158 -6.44425 -0.81706 1.01881 1.25465 1.35055 1.49131 1.56086 2.00209 2.34013 2.77315 2.91555 2.96140 3.06420 3.22719 3.28097 3.40951 3.61202 3.82291 3.87882 3.93386 3.98576 4.06069 4.23562 4.36769 4.47135 4.57938 4.60253 4.68235 4.74343 4.89764 4.91437 4.93068 5.19088 5.21326 5.30313 5.49015 5.49241 5.61350 6.21937 6.64654 6.88451 7.28121 8.84456 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.006671 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.449287 B = 4196.544165 C = 4988.612128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.119 0.881 4 C 0.481 3.519 5 O -0.529 6.529 6 O -0.506 6.506 7 N -0.989 5.989 8 C 0.057 3.943 9 C 0.227 3.773 10 F -0.195 7.195 11 F -0.215 7.215 12 S 2.606 3.394 13 O -0.978 6.978 14 O -0.977 6.977 15 C -0.582 4.582 16 C -0.032 4.032 17 C -0.526 4.526 18 H 0.029 0.971 19 C 0.041 3.959 20 N -0.930 5.930 21 Si 0.899 3.101 22 H -0.253 1.253 23 H -0.286 1.286 24 H -0.208 1.208 25 C -0.172 4.172 26 C -0.157 4.157 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.430 0.570 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.182 0.818 34 H 0.118 0.882 35 H 0.171 0.829 36 H 0.268 0.732 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.305 -14.182 5.684 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 H 0.136 0.864 4 C 0.321 3.679 5 O -0.419 6.419 6 O -0.319 6.319 7 N -0.825 5.825 8 C -0.068 4.068 9 C 0.173 3.827 10 F -0.177 7.177 11 F -0.197 7.197 12 S 2.705 3.295 13 O -0.968 6.968 14 O -0.967 6.967 15 C -0.714 4.714 16 C -0.035 4.035 17 C -0.563 4.563 18 H 0.047 0.953 19 C -0.160 4.160 20 N -0.567 5.567 21 Si 0.721 3.279 22 H -0.177 1.177 23 H -0.212 1.212 24 H -0.129 1.129 25 C -0.209 4.209 26 C -0.196 4.196 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.292 0.708 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.199 0.801 34 H 0.136 0.864 35 H 0.188 0.812 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.325 -14.156 5.560 22.311 hybrid contribution 0.102 0.812 0.562 0.992 sum -16.223 -13.344 6.122 21.880 Atomic orbital electron populations 1.22609 0.87504 1.05748 1.05441 1.20607 0.99403 0.96478 0.80148 0.86366 1.23774 0.73936 0.84748 0.85405 1.90651 1.44438 1.20331 1.86467 1.84505 1.78177 1.50342 1.18848 1.57727 1.64785 1.25235 1.34789 1.22929 0.98189 0.83455 1.02225 1.23242 0.86398 0.94422 0.78660 1.92991 1.63257 1.73762 1.87662 1.92793 1.89229 1.89960 1.47673 1.05041 0.75307 0.73807 0.75299 1.93443 1.70461 1.54826 1.78115 1.93552 1.71570 1.65201 1.66411 1.30504 1.13477 1.12922 1.14482 1.18721 0.97647 1.00420 0.86708 1.20477 0.91499 1.06829 1.37481 0.95275 1.25788 1.02213 0.95339 0.92615 1.70034 1.36235 1.15404 1.35039 0.86464 0.81207 0.78248 0.82002 1.17728 1.21194 1.12935 1.23041 1.00387 0.96324 1.01155 1.23106 0.97829 0.98671 0.99960 0.88741 0.89079 0.88780 0.70755 0.86677 0.83760 0.80142 0.86413 0.81153 0.92260 0.90132 0.87312 0.87346 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 7.51 71.98 0.54 -2.26 16 2 C 0.14 3.86 3.00 44.24 0.13 3.99 16 3 H 0.12 3.71 7.00 -2.39 -0.02 3.69 16 4 C 0.48 12.55 7.49 71.23 0.53 13.08 16 5 O -0.53 -15.50 15.29 21.96 0.34 -15.16 16 6 O -0.51 -10.21 13.42 -51.45 -0.69 -10.90 16 7 N -0.99 -30.24 2.40 -497.28 -1.19 -31.43 16 8 C 0.06 1.25 4.63 86.38 0.40 1.65 16 9 C 0.23 3.65 5.62 71.98 0.40 4.05 16 10 F -0.20 -3.27 12.24 44.97 0.55 -2.72 16 11 F -0.22 -4.94 13.30 44.97 0.60 -4.35 16 12 S 2.61 111.78 4.51 -56.49 -0.25 111.52 16 13 O -0.98 -44.78 16.66 -127.65 -2.13 -46.91 16 14 O -0.98 -51.65 15.84 -127.65 -2.02 -53.67 16 15 C -0.58 -22.93 5.48 71.98 0.39 -22.54 16 16 C -0.03 -1.49 0.92 -52.92 -0.05 -1.54 16 17 C -0.53 -30.78 8.03 25.60 0.21 -30.57 16 18 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 19 C 0.04 2.44 5.47 84.65 0.46 2.90 16 20 N -0.93 -59.71 13.96 21.45 0.30 -59.41 16 21 Si 0.90 41.44 24.84 68.60 1.70 43.15 16 22 H -0.25 -10.66 7.08 99.48 0.70 -9.96 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.21 -8.26 5.82 99.48 0.58 -7.69 16 25 C -0.17 -6.92 9.93 30.62 0.30 -6.62 16 26 C -0.16 -6.07 8.23 30.62 0.25 -5.82 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.69 6.73 -2.39 -0.02 1.67 16 29 H 0.09 1.32 6.13 -2.39 -0.01 1.31 16 30 H 0.43 4.55 9.10 -74.06 -0.67 3.88 16 31 H 0.12 2.71 7.10 -2.38 -0.02 2.69 16 32 H 0.14 2.44 6.20 -2.39 -0.01 2.42 16 33 H 0.18 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.12 4.47 4.94 -2.39 -0.01 4.46 16 35 H 0.17 5.44 4.58 -2.39 -0.01 5.43 16 36 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 37 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 39 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -85.88 335.77 1.09 -84.79 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.30 Total: 28.76 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 3.58 Total: -43.68 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -0.89 Total: -90.84 kcal Atomic # 8 Polarization: -122.14 SS G_CDS: -4.50 Total: -126.64 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.15 Total: -7.06 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.70 Total: 43.15 kcal Atomic # 16 Polarization: 111.78 SS G_CDS: -0.25 Total: 111.52 kcal Total: -85.88 1.09 -84.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589487031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.797 kcal (2) G-P(sol) polarization free energy of solvation -85.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds