Wall clock time and date at job start Sat Apr 11 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40214 * 126.59517 * 2 1 4 4 N 1.28762 * 108.37153 * 179.97438 * 3 2 1 5 5 C 1.34403 * 109.52359 * 359.97438 * 4 3 2 6 6 C 1.47492 * 125.77287 * 180.02562 * 5 4 3 7 7 O 1.21601 * 119.99906 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99720 * 359.97232 * 6 5 4 9 9 C 1.39391 * 119.99808 * 175.13452 * 8 6 5 10 10 C 1.38619 * 119.58294 * 184.91856 * 9 8 6 11 11 C 1.40800 * 118.79603 * 179.71842 * 10 9 8 12 12 C 1.41548 * 120.99997 * 180.27334 * 11 10 9 13 13 H 1.07994 * 120.00014 * 203.94416 * 12 11 10 14 14 C 1.40027 * 119.99713 * 23.93855 * 12 11 10 15 15 N 1.30745 * 120.00078 * 16.77165 * 14 12 11 16 16 Si 1.86802 * 120.00064 * 196.76359 * 14 12 11 17 17 H 1.48498 * 109.46835 * 90.00514 * 16 14 12 18 18 H 1.48506 * 109.47090 * 210.00351 * 16 14 12 19 19 H 1.48499 * 109.47184 * 330.00278 * 16 14 12 20 20 C 1.41182 * 118.00829 * 0.53783 * 11 10 9 21 21 C 1.37590 * 119.01945 * 359.73543 * 20 11 10 22 22 N 1.32083 * 121.10772 * 359.97438 * 21 20 11 23 23 C 1.34816 * 126.59120 * 179.68492 * 2 1 3 24 24 C 1.50704 * 126.58109 * 0.02562 * 23 2 1 25 25 F 1.39903 * 109.46963 * 30.03172 * 24 23 2 26 26 F 1.39899 * 109.46731 * 150.02444 * 24 23 2 27 27 F 1.39894 * 109.47162 * 270.02466 * 24 23 2 28 28 H 1.08995 * 109.46900 * 90.02447 * 1 2 3 29 29 H 1.08991 * 109.47121 * 210.03063 * 1 2 3 30 30 H 1.09010 * 109.46717 * 330.02570 * 1 2 3 31 31 H 0.96993 * 120.00225 * 355.14078 * 8 6 5 32 32 H 1.08003 * 120.59891 * 359.97066 * 10 9 8 33 33 H 0.96997 * 120.00605 * 179.97438 * 15 14 12 34 34 H 1.07994 * 120.49470 * 179.76321 * 20 11 10 35 35 H 1.07989 * 119.44438 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3009 1.1257 0.0000 4 7 3.5240 0.7231 0.0005 5 6 3.5545 -0.6206 0.0015 6 6 4.7704 -1.4555 0.0029 7 8 4.6755 -2.6678 0.0041 8 7 5.9865 -0.8746 0.0027 9 6 7.1337 -1.6595 0.1064 10 6 8.3739 -1.0487 0.2085 11 6 9.5212 -1.8574 0.3185 12 6 10.8100 -1.2830 0.4311 13 1 11.6809 -1.8478 0.1331 14 6 10.9556 0.0177 0.9289 15 7 9.9756 0.5793 1.5873 16 14 12.5503 0.9504 0.6525 17 1 12.4636 1.7132 -0.6187 18 1 12.7755 1.8908 1.7796 19 1 13.6795 -0.0111 0.5769 20 6 9.3483 -3.2586 0.3073 21 6 8.0772 -3.7734 0.1960 22 7 7.0255 -2.9799 0.1009 23 6 2.2687 -1.0824 0.0060 24 6 1.8324 -2.5249 0.0133 25 9 0.6046 -2.6441 -0.6466 26 9 2.7913 -3.3054 -0.6413 27 9 1.6964 -2.9642 1.3345 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8896 0.5143 30 1 -0.3633 0.8903 0.5135 31 1 6.0635 0.0896 -0.0695 32 1 8.4581 0.0280 0.2080 33 1 10.0765 1.4801 1.9325 34 1 10.2010 -3.9166 0.3853 35 1 7.9370 -4.8441 0.1872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650019072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:21 Heat of formation + Delta-G solvation = -31.714993 kcal Electronic energy + Delta-G solvation = -29395.931045 eV Core-core repulsion = 24596.413257 eV Total energy + Delta-G solvation = -4799.517788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.40364 -48.01560 -47.69220 -42.68935 -39.51272 -37.74490 -35.26849 -34.39472 -33.75487 -32.11027 -30.56020 -29.17546 -28.01897 -26.67475 -26.00223 -24.02202 -22.35315 -21.98157 -21.44198 -20.01022 -18.86143 -18.81465 -18.46228 -17.72228 -17.62383 -16.65375 -16.18346 -15.41867 -15.29299 -14.89153 -14.81115 -14.51901 -14.41506 -14.28253 -14.20741 -14.07245 -13.85558 -13.82610 -13.68676 -13.57669 -13.27455 -12.83197 -12.60881 -12.31395 -12.17409 -11.72511 -11.44560 -11.23126 -10.93617 -10.90746 -10.30707 -10.16772 -9.86288 -9.72809 -9.65155 -9.36150 -8.01808 -7.78280 -7.06429 -6.82089 -4.61436 0.33130 1.27811 1.41006 2.19455 2.65489 2.79176 3.03105 3.06192 3.16575 3.23305 3.28530 3.58343 3.63000 3.85414 3.94389 4.01729 4.21420 4.49377 4.59775 4.66574 4.78683 4.89745 5.32566 5.61670 5.67058 5.95581 6.54486 6.61296 6.79077 6.93408 7.09550 7.34336 7.37492 7.43672 7.72880 7.89914 8.16070 8.36280 8.63306 8.73283 8.77458 9.65055 10.06369 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.003062 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.427607 B = 9140.875891 C =10314.919439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.329 5.329 3 N -0.029 5.029 4 N -0.199 5.199 5 C -0.018 4.018 6 C 0.574 3.426 7 O -0.453 6.453 8 N -0.634 5.634 9 C 0.335 3.665 10 C -0.237 4.237 11 C 0.143 3.857 12 C -0.455 4.455 13 H 0.083 0.917 14 C 0.078 3.922 15 N -0.785 5.785 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.283 4.283 21 C 0.121 3.879 22 N -0.554 5.554 23 C -0.001 4.001 24 C 0.546 3.454 25 F -0.178 7.178 26 F -0.118 7.118 27 F -0.161 7.161 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.283 0.717 34 H 0.103 0.897 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.046 1.558 -2.432 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.117 5.117 3 N -0.009 5.009 4 N -0.070 5.070 5 C -0.160 4.160 6 C 0.354 3.646 7 O -0.321 6.321 8 N -0.280 5.280 9 C 0.111 3.889 10 C -0.263 4.263 11 C 0.135 3.865 12 C -0.486 4.486 13 H 0.101 0.899 14 C -0.142 4.142 15 N -0.410 5.410 16 Si 0.736 3.264 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.307 4.307 21 C -0.033 4.033 22 N -0.274 5.274 23 C -0.140 4.140 24 C 0.488 3.512 25 F -0.159 7.159 26 F -0.099 7.099 27 F -0.142 7.142 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.252 0.748 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.090 2.015 -2.359 19.341 hybrid contribution 1.167 0.369 0.095 1.227 sum -17.924 2.384 -2.264 18.223 Atomic orbital electron populations 1.22497 0.71520 1.06481 1.05776 1.50288 1.09396 1.04061 1.47922 1.82071 0.93634 1.05000 1.20166 1.74793 1.12314 1.09343 1.10597 1.21798 0.93706 0.90504 1.10027 1.16820 0.81517 0.86840 0.79398 1.91010 1.84816 1.11463 1.44765 1.43084 1.03646 1.10700 1.70542 1.18085 0.84072 0.88814 0.97923 1.21547 0.90036 1.00966 1.13710 1.17556 0.92915 0.90391 0.85624 1.19590 0.93348 0.98195 1.37419 0.89881 1.25968 0.98466 0.97529 0.92194 1.69770 1.32848 1.14590 1.23784 0.86247 0.81699 0.79516 0.78920 1.19132 1.20215 1.18500 1.21901 0.96962 0.95817 1.15982 1.21744 0.88073 0.97461 0.96057 1.67184 1.33439 1.02591 1.24157 1.21628 0.92620 0.90124 1.09603 1.16906 0.75256 0.83762 0.75253 1.93207 1.44875 1.96557 1.81265 1.93509 1.61369 1.74746 1.80284 1.93282 1.95512 1.90325 1.35063 0.88093 0.88110 0.87028 0.74763 0.85304 0.90582 0.87912 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 10.52 59.85 0.63 1.03 16 2 N -0.33 -3.58 4.03 -63.58 -0.26 -3.83 16 3 N -0.03 -0.38 13.78 60.35 0.83 0.45 16 4 N -0.20 -3.08 12.04 32.84 0.40 -2.68 16 5 C -0.02 -0.30 6.96 -83.56 -0.58 -0.88 16 6 C 0.57 11.36 7.72 -12.49 -0.10 11.27 16 7 O -0.45 -10.04 11.29 5.28 0.06 -9.98 16 8 N -0.63 -13.10 5.38 -12.45 -0.07 -13.17 16 9 C 0.34 8.15 7.41 -154.76 -1.15 7.00 16 10 C -0.24 -6.01 8.62 -38.47 -0.33 -6.34 16 11 C 0.14 3.74 5.60 -106.55 -0.60 3.14 16 12 C -0.45 -11.58 9.12 -37.65 -0.34 -11.92 16 13 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 14 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 15 N -0.78 -19.34 10.93 55.55 0.61 -18.73 16 16 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 17 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 C -0.28 -6.85 9.90 -38.70 -0.38 -7.24 16 21 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 22 N -0.55 -13.94 7.85 -12.54 -0.10 -14.04 16 23 C 0.00 -0.01 6.46 -81.86 -0.53 -0.54 16 24 C 0.55 7.09 3.15 36.01 0.11 7.20 16 25 F -0.18 -1.78 15.30 2.25 0.03 -1.74 16 26 F -0.12 -1.93 13.40 2.25 0.03 -1.90 16 27 F -0.16 -2.13 17.30 2.25 0.04 -2.10 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.41 7.07 -51.93 -0.37 0.04 16 30 H 0.11 0.35 8.14 -51.92 -0.42 -0.07 16 31 H 0.42 7.60 8.39 -40.82 -0.34 7.26 16 32 H 0.13 3.26 6.21 -52.48 -0.33 2.94 16 33 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 34 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -31.12 324.30 -4.40 -35.51 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.27 Total: 7.32 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.55 Total: 7.17 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 1.41 Total: -52.00 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.06 Total: -9.98 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.10 Total: -5.74 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.12 -4.40 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650019072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.797 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds