Wall clock time and date at job start Sat Apr 11 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35679 * 116.99960 * 2 1 4 4 C 1.38629 * 119.63880 * 180.29895 * 3 2 1 5 5 C 1.39173 * 119.05424 * 180.24549 * 4 3 2 6 6 N 1.39563 * 120.81713 * 179.72883 * 5 4 3 7 7 C 1.34768 * 120.00224 * 327.25406 * 6 5 4 8 8 O 1.21588 * 120.00006 * 354.69466 * 7 6 5 9 9 N 1.34778 * 120.00301 * 174.69099 * 7 6 5 10 10 C 1.47419 * 125.64328 * 0.04536 * 9 7 6 11 11 C 1.54910 * 104.83278 * 204.09145 * 10 9 7 12 12 C 1.55156 * 101.58128 * 322.99038 * 11 10 9 13 13 O 1.42901 * 110.72166 * 277.13977 * 12 11 10 14 14 C 1.50698 * 110.87449 * 153.93525 * 12 11 10 15 15 H 1.08001 * 120.00208 * 2.54497 * 14 12 11 16 16 C 1.37880 * 120.00017 * 182.55320 * 14 12 11 17 17 N 1.31513 * 119.99956 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99893 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47412 * 89.99503 * 18 16 14 20 20 H 1.48501 * 109.46971 * 209.99653 * 18 16 14 21 21 H 1.48504 * 109.47155 * 329.99063 * 18 16 14 22 22 C 1.47015 * 125.65212 * 180.02562 * 9 7 6 23 23 C 1.39497 * 118.36008 * 359.45911 * 5 4 3 24 24 C 1.37977 * 119.18961 * 0.26875 * 23 5 4 25 25 Cl 1.73599 * 119.56261 * 180.02562 * 24 23 5 26 26 N 1.32147 * 120.87378 * 0.02562 * 24 23 5 27 27 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47600 * 300.00502 * 1 2 3 29 29 H 1.09003 * 109.46982 * 60.01017 * 1 2 3 30 30 H 1.07993 * 120.47531 * 359.97438 * 4 3 2 31 31 H 0.97002 * 119.99224 * 147.26023 * 6 5 4 32 32 H 1.08994 * 110.37190 * 322.92773 * 10 9 7 33 33 H 1.08999 * 110.37140 * 85.14537 * 10 9 7 34 34 H 1.09005 * 111.00555 * 204.92161 * 11 10 9 35 35 H 1.08997 * 111.00817 * 81.06404 * 11 10 9 36 36 H 0.96700 * 114.00044 * 174.96947 * 13 12 11 37 37 H 0.97006 * 119.99807 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.88485 * 59.55932 * 22 9 7 39 39 H 1.09006 * 110.01171 * 298.46702 * 22 9 7 40 40 H 1.07999 * 120.41199 * 180.25532 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4297 1.2728 -0.0063 5 6 4.0489 2.5192 -0.0010 6 7 5.4404 2.6263 -0.0014 7 6 6.1880 1.6964 0.6253 8 8 5.6500 0.8184 1.2719 9 7 7.5321 1.7395 0.5352 10 6 8.3113 2.7442 -0.2109 11 6 9.6582 2.0472 -0.5265 12 6 9.8919 1.2213 0.7661 13 8 10.4799 2.0325 1.7851 14 6 10.7511 0.0157 0.4850 15 1 11.1457 -0.1468 -0.5071 16 6 11.0335 -0.8801 1.4944 17 7 10.5533 -0.6821 2.7026 18 14 12.0992 -2.3742 1.1461 19 1 13.5242 -2.0332 1.3882 20 1 11.6978 -3.4883 2.0422 21 1 11.9229 -2.7890 -0.2688 22 6 8.4640 0.7928 1.1650 23 6 3.2443 3.6587 -0.0011 24 6 1.8722 3.5137 -0.0008 25 17 0.8617 4.9253 -0.0016 26 7 1.3171 2.3145 0.0002 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0197 0.3682 -0.0108 31 1 5.8694 3.3701 -0.4526 32 1 7.7981 3.0133 -1.1341 33 1 8.4752 3.6298 0.4031 34 1 10.4527 2.7794 -0.6711 35 1 9.5668 1.3954 -1.3953 36 1 10.5758 1.5855 2.6372 37 1 10.7523 -1.3122 3.4129 38 1 8.2658 -0.2170 0.8056 39 1 8.3557 0.8281 2.2491 40 1 3.6899 4.6425 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670822943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:24 Heat of formation + Delta-G solvation = -70.999447 kcal Electronic energy + Delta-G solvation = -27189.897786 eV Core-core repulsion = 23031.640730 eV Total energy + Delta-G solvation = -4158.257056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14196 -39.95346 -38.32179 -37.61846 -36.72169 -35.01353 -34.47746 -32.27377 -31.33287 -30.77943 -29.87919 -27.95478 -27.32229 -25.37416 -23.94355 -23.29444 -22.41145 -20.11543 -19.73796 -18.95062 -17.98095 -17.32055 -17.03122 -16.26622 -16.20753 -16.09534 -15.53051 -15.28293 -14.92100 -14.66626 -14.31438 -14.25308 -14.07128 -13.51527 -13.05112 -12.97926 -12.64470 -12.49300 -12.15938 -12.03559 -11.78601 -11.62407 -11.50552 -11.35005 -11.11994 -10.95196 -10.79527 -10.69672 -10.53056 -10.30981 -10.25440 -9.76507 -9.45241 -8.85432 -8.74300 -8.64210 -8.42293 -8.04626 -6.35603 -4.44123 0.83268 0.97274 1.47973 2.56078 2.96199 3.17869 3.21860 3.25872 3.27931 3.60711 3.99251 4.22433 4.36824 4.73952 4.82204 4.91619 5.05348 5.14707 5.15990 5.20215 5.35025 5.49385 5.51162 5.60907 5.69769 5.85208 5.89341 6.00701 6.36312 6.50434 6.56256 6.71926 6.75326 6.98128 7.01240 7.17004 7.33291 7.48171 7.66499 7.93275 8.11159 8.58461 8.68053 9.22516 9.32046 10.72465 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018358 B = 0.002592 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.887172 B =10799.225528 C =11896.528477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.298 6.298 3 C 0.358 3.642 4 C -0.192 4.192 5 C 0.270 3.730 6 N -0.681 5.681 7 C 0.712 3.288 8 O -0.569 6.569 9 N -0.619 5.619 10 C 0.096 3.904 11 C -0.115 4.115 12 C 0.249 3.751 13 O -0.585 6.585 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.894 5.894 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.118 3.882 23 C -0.226 4.226 24 C 0.233 3.767 25 Cl -0.030 7.030 26 N -0.555 5.555 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.164 0.836 31 H 0.412 0.588 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.385 0.615 37 H 0.271 0.729 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.189 8.702 -7.008 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.180 3.820 4 C -0.216 4.216 5 C 0.163 3.837 6 N -0.329 5.329 7 C 0.414 3.586 8 O -0.445 6.445 9 N -0.355 5.355 10 C -0.026 4.026 11 C -0.153 4.153 12 C 0.209 3.791 13 O -0.394 6.394 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.533 5.533 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.004 4.004 23 C -0.251 4.251 24 C 0.070 3.930 25 Cl -0.001 7.001 26 N -0.284 5.284 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.249 0.751 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.392 8.121 -6.797 19.515 hybrid contribution 1.179 -0.518 0.219 1.306 sum -15.213 7.603 -6.578 18.235 Atomic orbital electron populations 1.22896 0.77028 1.03100 1.02554 1.86310 1.22997 1.23656 1.87473 1.19189 0.88430 0.83561 0.90815 1.21107 0.91983 0.99628 1.08892 1.17130 0.82869 0.92114 0.91537 1.42697 1.03244 1.29552 1.57386 1.15488 0.80982 0.81922 0.80201 1.90959 1.70817 1.37360 1.45392 1.48051 1.02534 1.31855 1.53024 1.22377 0.93517 0.92147 0.94605 1.22730 0.94274 0.99294 0.99027 1.19499 0.87290 0.88123 0.84229 1.86097 1.84302 1.44293 1.24713 1.21475 1.32083 1.07021 0.97058 0.91440 1.25074 0.95090 0.98152 0.94919 1.69634 1.44325 1.37832 1.01483 0.86381 0.80368 0.81590 0.78463 1.20353 1.20965 1.19681 1.23070 0.88728 0.91088 0.97497 1.21259 0.91736 0.99491 1.12584 1.20642 0.87773 0.87385 0.97204 1.98405 1.70123 1.35170 1.96427 1.66481 1.41391 0.97616 1.22878 0.88464 0.92143 0.92190 0.81900 0.75101 0.92269 0.91433 0.90276 0.90313 0.76432 0.91863 0.91275 0.91490 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.30 -4.04 10.47 -18.74 -0.20 -4.23 16 3 C 0.36 5.17 7.48 -17.18 -0.13 5.04 16 4 C -0.19 -2.94 8.66 -39.09 -0.34 -3.28 16 5 C 0.27 3.69 6.32 -83.52 -0.53 3.16 16 6 N -0.68 -9.29 5.30 -14.09 -0.07 -9.37 16 7 C 0.71 13.05 8.25 -86.92 -0.72 12.34 16 8 O -0.57 -12.53 14.38 5.29 0.08 -12.45 16 9 N -0.62 -11.58 3.33 -176.25 -0.59 -12.16 16 10 C 0.10 1.48 6.52 -2.53 -0.02 1.46 16 11 C -0.12 -2.08 6.23 -24.58 -0.15 -2.24 16 12 C 0.25 5.65 0.85 -89.94 -0.08 5.57 16 13 O -0.58 -13.92 13.07 -35.23 -0.46 -14.38 16 14 C -0.54 -13.42 8.12 -34.44 -0.28 -13.70 16 15 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 16 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 17 N -0.89 -23.03 10.97 55.43 0.61 -22.42 16 18 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C 0.12 2.67 5.37 -3.07 -0.02 2.65 16 23 C -0.23 -2.58 9.81 -39.21 -0.38 -2.96 16 24 C 0.23 2.85 7.26 -17.51 -0.13 2.72 16 25 Cl -0.03 -0.30 29.10 -51.86 -1.51 -1.81 16 26 N -0.56 -7.51 9.19 -10.52 -0.10 -7.61 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.16 2.81 6.48 -52.49 -0.34 2.47 16 31 H 0.41 4.23 7.37 -40.82 -0.30 3.93 16 32 H 0.06 0.69 7.38 -51.93 -0.38 0.30 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 36 H 0.38 9.49 7.26 45.56 0.33 9.82 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.07 1.72 7.81 -51.93 -0.41 1.31 16 39 H 0.07 1.68 7.98 -51.93 -0.41 1.26 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -29.10 354.32 -7.74 -36.84 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.01 Total: 13.50 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: -1.81 Total: 13.89 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.15 Total: -51.56 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.58 Total: -31.07 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.10 -7.74 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670822943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.163 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds