Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35679 * 116.99960 * 2 1 4 4 C 1.38629 * 119.63880 * 180.29895 * 3 2 1 5 5 C 1.39173 * 119.05424 * 180.24549 * 4 3 2 6 6 N 1.39563 * 120.81713 * 179.72883 * 5 4 3 7 7 C 1.34768 * 120.00224 * 327.25406 * 6 5 4 8 8 O 1.21588 * 120.00006 * 354.69466 * 7 6 5 9 9 N 1.34778 * 120.00301 * 174.69099 * 7 6 5 10 10 C 1.47419 * 125.64328 * 0.04536 * 9 7 6 11 11 C 1.54910 * 104.83278 * 204.09145 * 10 9 7 12 12 C 1.55156 * 101.58128 * 322.99038 * 11 10 9 13 13 O 1.42901 * 110.72166 * 277.13977 * 12 11 10 14 14 C 1.50698 * 110.87449 * 153.93525 * 12 11 10 15 15 H 1.08001 * 120.00208 * 2.54497 * 14 12 11 16 16 C 1.37880 * 120.00017 * 182.55320 * 14 12 11 17 17 N 1.31513 * 119.99956 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99893 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47412 * 89.99503 * 18 16 14 20 20 H 1.48501 * 109.46971 * 209.99653 * 18 16 14 21 21 H 1.48504 * 109.47155 * 329.99063 * 18 16 14 22 22 C 1.47015 * 125.65212 * 180.02562 * 9 7 6 23 23 C 1.39497 * 118.36008 * 359.45911 * 5 4 3 24 24 C 1.37977 * 119.18961 * 0.26875 * 23 5 4 25 25 Cl 1.73599 * 119.56261 * 180.02562 * 24 23 5 26 26 N 1.32147 * 120.87378 * 0.02562 * 24 23 5 27 27 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47600 * 300.00502 * 1 2 3 29 29 H 1.09003 * 109.46982 * 60.01017 * 1 2 3 30 30 H 1.07993 * 120.47531 * 359.97438 * 4 3 2 31 31 H 0.97002 * 119.99224 * 147.26023 * 6 5 4 32 32 H 1.08994 * 110.37190 * 322.92773 * 10 9 7 33 33 H 1.08999 * 110.37140 * 85.14537 * 10 9 7 34 34 H 1.09005 * 111.00555 * 204.92161 * 11 10 9 35 35 H 1.08997 * 111.00817 * 81.06404 * 11 10 9 36 36 H 0.96700 * 114.00044 * 174.96947 * 13 12 11 37 37 H 0.97006 * 119.99807 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.88485 * 59.55932 * 22 9 7 39 39 H 1.09006 * 110.01171 * 298.46702 * 22 9 7 40 40 H 1.07999 * 120.41199 * 180.25532 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4297 1.2728 -0.0063 5 6 4.0489 2.5192 -0.0010 6 7 5.4404 2.6263 -0.0014 7 6 6.1880 1.6964 0.6253 8 8 5.6500 0.8184 1.2719 9 7 7.5321 1.7395 0.5352 10 6 8.3113 2.7442 -0.2109 11 6 9.6582 2.0472 -0.5265 12 6 9.8919 1.2213 0.7661 13 8 10.4799 2.0325 1.7851 14 6 10.7511 0.0157 0.4850 15 1 11.1457 -0.1468 -0.5071 16 6 11.0335 -0.8801 1.4944 17 7 10.5533 -0.6821 2.7026 18 14 12.0992 -2.3742 1.1461 19 1 13.5242 -2.0332 1.3882 20 1 11.6978 -3.4883 2.0422 21 1 11.9229 -2.7890 -0.2688 22 6 8.4640 0.7928 1.1650 23 6 3.2443 3.6587 -0.0011 24 6 1.8722 3.5137 -0.0008 25 17 0.8617 4.9253 -0.0016 26 7 1.3171 2.3145 0.0002 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 4.0197 0.3682 -0.0108 31 1 5.8694 3.3701 -0.4526 32 1 7.7981 3.0133 -1.1341 33 1 8.4752 3.6298 0.4031 34 1 10.4527 2.7794 -0.6711 35 1 9.5668 1.3954 -1.3953 36 1 10.5758 1.5855 2.6372 37 1 10.7523 -1.3122 3.4129 38 1 8.2658 -0.2170 0.8056 39 1 8.3557 0.8281 2.2491 40 1 3.6899 4.6425 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670822943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -93.803414 kcal Electronic energy + Delta-G solvation = -27190.886640 eV Core-core repulsion = 23031.640730 eV Total energy + Delta-G solvation = -4159.245910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29014 -41.24707 -39.57641 -38.92677 -37.69147 -36.28747 -36.14304 -34.19915 -32.60865 -31.78657 -31.28389 -29.59382 -28.19884 -27.10934 -25.15789 -24.52568 -23.64357 -21.51427 -21.33974 -20.10237 -19.28017 -19.04506 -18.23335 -17.56127 -17.23002 -17.16190 -16.96601 -16.82619 -16.33873 -16.03526 -15.80489 -15.26423 -15.06243 -14.89443 -14.76347 -14.70926 -14.00958 -13.66964 -13.49113 -13.34420 -13.05440 -12.85710 -12.84292 -12.56900 -12.46548 -12.35216 -12.32554 -12.28079 -12.08888 -11.68003 -11.62093 -11.20431 -10.99269 -10.64415 -10.29950 -10.06835 -9.65513 -9.52904 -8.26914 -6.41693 -0.21029 -0.07519 0.53013 1.29914 1.42514 1.44619 1.53094 1.83580 2.01205 2.37734 2.49008 2.74551 3.00410 3.37352 3.76482 3.78557 3.82021 3.98220 4.11046 4.18248 4.30977 4.36891 4.41122 4.44047 4.58888 4.66989 4.69470 4.75976 4.84492 5.02829 5.11275 5.17417 5.34328 5.37329 5.47772 5.75155 5.86394 6.02470 6.07677 6.46185 6.63785 6.77356 7.25681 7.28959 7.36769 8.79171 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018358 B = 0.002592 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.887172 B =10799.225528 C =11896.528477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.352 3.648 4 C -0.214 4.214 5 C 0.261 3.739 6 N -0.658 5.658 7 C 0.712 3.288 8 O -0.613 6.613 9 N -0.622 5.622 10 C 0.100 3.900 11 C -0.111 4.111 12 C 0.233 3.767 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.068 0.932 16 C 0.026 3.974 17 N -0.915 5.915 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.137 3.863 23 C -0.206 4.206 24 C 0.226 3.774 25 Cl -0.006 7.006 26 N -0.558 5.558 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.135 0.865 31 H 0.432 0.568 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.376 0.624 37 H 0.270 0.730 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.968 10.867 -8.654 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.223 6.223 3 C 0.173 3.827 4 C -0.238 4.238 5 C 0.155 3.845 6 N -0.308 5.308 7 C 0.415 3.585 8 O -0.493 6.493 9 N -0.358 5.358 10 C -0.021 4.021 11 C -0.148 4.148 12 C 0.193 3.807 13 O -0.395 6.395 14 C -0.593 4.593 15 H 0.086 0.914 16 C -0.175 4.175 17 N -0.555 5.555 18 Si 0.786 3.214 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.192 1.192 22 C 0.013 3.987 23 C -0.230 4.230 24 C 0.062 3.938 25 Cl 0.023 6.977 26 N -0.286 5.286 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.273 0.727 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.226 0.774 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.187 10.351 -8.497 21.789 hybrid contribution 1.303 -1.151 0.726 1.884 sum -15.884 9.200 -7.771 19.934 Atomic orbital electron populations 1.23151 0.75093 1.04955 1.02734 1.86293 1.25023 1.23629 1.87374 1.19195 0.88267 0.84160 0.91074 1.21017 0.92524 0.99522 1.10721 1.17238 0.82737 0.92358 0.92144 1.42270 1.03027 1.28880 1.56589 1.15588 0.80864 0.82065 0.80031 1.90937 1.71657 1.39379 1.47309 1.47912 1.02623 1.31959 1.53275 1.22582 0.92035 0.90996 0.96511 1.22726 0.96346 0.99255 0.96521 1.19718 0.86425 0.88685 0.85893 1.86087 1.84486 1.44346 1.24561 1.21840 1.32351 1.08080 0.97064 0.91382 1.25785 0.96246 1.00533 0.94913 1.69741 1.45230 1.38479 1.02037 0.85509 0.78972 0.78638 0.78262 1.19860 1.21335 1.19178 1.22505 0.90198 0.90561 0.95401 1.21499 0.91142 1.00057 1.10353 1.20987 0.88612 0.87646 0.96516 1.98417 1.69544 1.33545 1.96240 1.66556 1.41371 0.97871 1.22845 0.85883 0.92229 0.91627 0.84703 0.72718 0.87303 0.90106 0.88873 0.89710 0.77387 0.92090 0.94630 0.94979 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.38 113.37 1.18 1.82 16 2 O -0.32 -8.67 10.47 -89.97 -0.94 -9.61 16 3 C 0.35 10.13 7.48 84.71 0.63 10.76 16 4 C -0.21 -6.64 8.66 22.59 0.20 -6.44 16 5 C 0.26 6.76 6.32 38.44 0.24 7.00 16 6 N -0.66 -16.65 5.30 -316.76 -1.68 -18.32 16 7 C 0.71 25.97 8.25 179.06 1.48 27.45 16 8 O -0.61 -28.06 14.38 -3.99 -0.06 -28.11 16 9 N -0.62 -22.97 3.33 -829.79 -2.76 -25.73 16 10 C 0.10 2.77 6.52 86.86 0.57 3.33 16 11 C -0.11 -3.78 6.23 31.99 0.20 -3.58 16 12 C 0.23 10.64 0.85 -10.35 -0.01 10.63 16 13 O -0.59 -28.18 13.07 -148.98 -1.95 -30.13 16 14 C -0.56 -28.00 8.12 25.60 0.21 -27.79 16 15 H 0.07 3.33 7.78 -2.91 -0.02 3.31 16 16 C 0.03 1.34 5.28 84.66 0.45 1.79 16 17 N -0.92 -48.75 10.97 21.45 0.24 -48.52 16 18 Si 0.96 41.28 29.54 68.60 2.03 43.31 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 C 0.14 6.43 5.37 86.73 0.47 6.89 16 23 C -0.21 -4.11 9.81 22.51 0.22 -3.89 16 24 C 0.23 4.97 7.26 84.58 0.61 5.59 16 25 Cl -0.01 -0.11 29.10 -2.72 -0.08 -0.19 16 26 N -0.56 -14.39 9.19 -300.00 -2.76 -17.15 16 27 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 29 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.14 4.96 6.48 -2.91 -0.02 4.94 16 31 H 0.43 7.20 7.37 -92.71 -0.68 6.52 16 32 H 0.11 1.98 7.38 -2.39 -0.02 1.96 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.08 2.78 8.04 -2.39 -0.02 2.76 16 36 H 0.38 19.19 7.26 -74.06 -0.54 18.65 16 37 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 38 H 0.04 1.86 7.81 -2.39 -0.02 1.84 16 39 H 0.03 1.69 7.98 -2.38 -0.02 1.67 16 40 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -66.48 354.32 -1.62 -68.11 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.11 Total: 32.78 kcal Atomic # 6 Polarization: 27.12 SS G_CDS: 6.44 Total: 33.56 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -6.96 Total: -109.71 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: -2.95 Total: -67.86 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -66.48 -1.62 -68.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670822943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.695 kcal (2) G-P(sol) polarization free energy of solvation -66.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds