Wall clock time and date at job start Sat Apr 11 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47435 * 2 1 4 4 C 1.50705 * 109.47466 * 239.99931 * 2 1 3 5 5 N 1.29020 * 124.91632 * 286.77436 * 4 2 1 6 6 C 1.31780 * 117.12701 * 180.22147 * 5 4 2 7 7 C 1.33647 * 114.49740 * 359.47988 * 6 5 4 8 8 S 1.70982 * 124.91471 * 106.45739 * 4 2 1 9 9 N 1.46897 * 109.47104 * 120.00096 * 2 1 3 10 10 C 1.46895 * 110.99897 * 298.63664 * 9 2 1 11 11 C 1.53243 * 109.34081 * 172.74670 * 10 9 2 12 12 N 1.47081 * 108.52249 * 53.82775 * 11 10 9 13 13 C 1.34777 * 120.87910 * 128.79173 * 12 11 10 14 14 O 1.21282 * 119.99927 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00259 * 0.02912 * 13 12 11 16 16 S 1.80994 * 109.47385 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00135 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00367 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00254 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00164 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99724 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47012 * 89.99609 * 21 19 17 23 23 H 1.48494 * 109.47025 * 209.99753 * 21 19 17 24 24 H 1.48496 * 109.47218 * 330.00059 * 21 19 17 25 25 C 1.47076 * 118.23929 * 308.81948 * 12 11 10 26 26 C 1.46904 * 110.99993 * 174.33498 * 9 2 1 27 27 H 1.08998 * 109.47398 * 299.99989 * 1 2 3 28 28 H 1.09004 * 109.46950 * 59.99750 * 1 2 3 29 29 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.07997 * 122.75711 * 179.74609 * 6 5 4 31 31 H 1.07996 * 126.03970 * 180.27063 * 7 6 5 32 32 H 1.09001 * 109.49766 * 292.70225 * 10 9 2 33 33 H 1.09004 * 109.49440 * 52.78983 * 10 9 2 34 34 H 1.09009 * 109.62689 * 294.12339 * 11 10 9 35 35 H 1.08999 * 109.79533 * 173.63745 * 11 10 9 36 36 H 1.09001 * 109.47252 * 299.99738 * 15 13 12 37 37 H 1.09006 * 109.46875 * 59.99494 * 15 13 12 38 38 H 0.97005 * 120.00045 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.63087 * 291.47225 * 25 12 11 40 40 H 1.08999 * 109.63043 * 170.88653 * 25 12 11 41 41 H 1.09001 * 109.49398 * 307.21235 * 26 9 2 42 42 H 1.09008 * 109.49133 * 67.27265 * 26 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.9907 -1.9867 -1.4151 6 6 2.4787 -2.4459 -2.5498 7 6 2.9488 -1.5035 -3.3726 8 16 2.7331 0.0589 -2.5871 9 7 2.0196 -0.6925 1.1994 10 6 1.5754 -0.0078 2.4208 11 6 1.9495 -0.8547 3.6419 12 7 3.3892 -1.1495 3.5828 13 6 4.1882 -0.9107 4.6416 14 8 5.3734 -1.1594 4.5752 15 6 3.6090 -0.3349 5.9080 16 16 4.9238 -0.1325 7.1353 17 6 3.9931 0.5371 8.4732 18 1 2.9308 0.6985 8.3647 19 6 4.6251 0.8563 9.6672 20 7 3.9297 1.3561 10.6667 21 14 6.4624 0.5766 9.8552 22 1 7.1949 1.7961 9.4291 23 1 6.7754 0.2825 11.2767 24 1 6.8776 -0.5710 9.0092 25 6 3.9340 -1.7110 2.3374 26 6 3.4818 -0.8305 1.1676 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.4934 -3.4972 -2.7967 31 1 3.3839 -1.6701 -4.3469 32 1 2.0621 0.9650 2.4900 33 1 0.4942 0.1273 2.3893 34 1 1.3841 -1.7866 3.6284 35 1 1.7257 -0.3040 4.5556 36 1 3.1592 0.6346 5.6939 37 1 2.8480 -1.0101 6.2993 38 1 4.3713 1.5788 11.5013 39 1 3.5595 -2.7252 2.1984 40 1 5.0228 -1.7234 2.3868 41 1 3.7832 -1.2919 0.2272 42 1 3.9420 0.1540 1.2538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185766994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:37 Heat of formation + Delta-G solvation = 32.628536 kcal Electronic energy + Delta-G solvation = -24762.537928 eV Core-core repulsion = 21189.404191 eV Total energy + Delta-G solvation = -3573.133737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54421 -39.74944 -38.12275 -35.31659 -32.43988 -32.24331 -31.60772 -29.69192 -29.32589 -26.62773 -25.93499 -25.58859 -23.66451 -22.61651 -21.52136 -19.93766 -18.96705 -18.44308 -17.72241 -16.96260 -16.12862 -15.83294 -15.67177 -15.46049 -15.28980 -14.99037 -14.93962 -14.58800 -14.08227 -13.84848 -13.78867 -13.38632 -13.25961 -12.81639 -12.64133 -12.52519 -12.33099 -12.02477 -11.92637 -11.79727 -11.53743 -11.36550 -11.26235 -11.13096 -11.00640 -10.57975 -9.92823 -9.85422 -9.77296 -9.45843 -9.30270 -9.00300 -8.87617 -8.48561 -8.43719 -6.91658 -6.28771 -4.00350 0.29692 0.92411 1.33651 2.48291 2.70837 2.94437 3.17925 3.33331 3.49440 3.51353 3.60627 3.66194 4.33309 4.39694 4.51813 4.64506 4.70448 4.78953 4.81511 4.85662 5.04170 5.08804 5.09973 5.10433 5.11289 5.20631 5.27229 5.33381 5.43043 5.56645 5.65308 5.73467 5.73985 5.78289 5.85612 5.93025 5.99227 6.50547 6.59785 6.70217 7.41891 7.49994 7.94239 8.41483 8.45004 9.17560 10.80380 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.002237 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.452674 B =12513.604810 C =12978.898592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.057 3.943 5 N -0.445 5.445 6 C 0.039 3.961 7 C -0.259 4.259 8 S 0.110 5.890 9 N -0.516 5.516 10 C 0.037 3.963 11 C 0.114 3.886 12 N -0.620 5.620 13 C 0.534 3.466 14 O -0.520 6.520 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.123 3.877 26 C 0.045 3.955 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.176 0.824 31 H 0.177 0.823 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.919 -3.244 -29.589 30.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.049 3.951 3 H 0.078 0.922 4 C -0.221 4.221 5 N -0.158 5.158 6 C -0.113 4.113 7 C -0.398 4.398 8 S 0.364 5.636 9 N -0.242 5.242 10 C -0.091 4.091 11 C -0.010 4.010 12 N -0.356 5.356 13 C 0.321 3.679 14 O -0.395 6.395 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C 0.000 4.000 26 C -0.084 4.084 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.193 0.807 31 H 0.194 0.806 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.357 -3.319 -29.345 30.209 hybrid contribution -0.328 0.166 -0.041 0.369 sum -6.685 -3.153 -29.386 30.301 Atomic orbital electron populations 1.21882 0.91776 1.03958 1.02320 1.20164 0.96599 0.93511 0.84861 0.92179 1.26974 1.02251 0.92631 1.00289 1.66239 1.17347 1.11949 1.20304 1.21952 0.98792 1.01592 0.88937 1.27125 1.11517 0.94513 1.06661 1.84149 1.56053 1.11219 1.12196 1.61921 1.11368 1.50526 1.00421 1.22633 1.01540 0.95741 0.89235 1.21822 0.80948 1.00279 0.97934 1.48138 1.08650 1.65154 1.13700 1.20306 0.86287 0.77238 0.84019 1.90686 1.15470 1.51166 1.82177 1.23299 1.04125 1.03732 0.95967 1.84807 1.13064 1.84267 1.09547 1.22306 0.97822 1.48268 0.98392 0.89384 1.24711 0.98766 0.93344 0.94497 1.69935 1.36470 1.41371 1.03907 0.86737 0.85089 0.81196 0.78850 1.19247 1.19948 1.15906 1.21555 1.00176 0.96588 0.81706 1.22499 0.87054 0.99371 0.99494 0.91029 0.91951 0.90523 0.80657 0.80563 0.93860 0.88714 0.90376 0.88646 0.88635 0.88440 0.91951 0.90841 0.88717 0.90086 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.00 37.15 0.33 -0.61 16 2 C 0.16 1.32 2.58 -68.87 -0.18 1.14 16 3 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 4 C 0.06 0.50 4.46 -13.46 -0.06 0.44 16 5 N -0.44 -4.40 10.21 -11.86 -0.12 -4.52 16 6 C 0.04 0.30 11.35 -19.18 -0.22 0.08 16 7 C -0.26 -1.67 11.37 29.12 0.33 -1.33 16 8 S 0.11 0.78 23.18 -107.50 -2.49 -1.71 16 9 N -0.52 -5.00 4.47 -227.72 -1.02 -6.02 16 10 C 0.04 0.33 5.42 -3.70 -0.02 0.31 16 11 C 0.11 1.23 6.50 -3.60 -0.02 1.21 16 12 N -0.62 -8.76 3.01 -172.46 -0.52 -9.28 16 13 C 0.53 9.84 7.73 -10.99 -0.08 9.76 16 14 O -0.52 -11.49 15.31 5.56 0.09 -11.41 16 15 C -0.12 -2.36 4.52 36.00 0.16 -2.19 16 16 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 17 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 21 Si 0.86 21.85 27.74 -169.99 -4.72 17.13 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 C 0.12 1.57 6.60 -3.60 -0.02 1.55 16 26 C 0.04 0.48 5.38 -3.69 -0.02 0.46 16 27 H 0.07 0.40 6.28 -51.93 -0.33 0.08 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.66 5.99 -51.93 -0.31 0.35 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.10 1.00 6.02 -51.93 -0.31 0.69 16 36 H 0.10 1.72 7.66 -51.92 -0.40 1.32 16 37 H 0.10 1.78 8.00 -51.91 -0.42 1.36 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.34 7.06 -51.93 -0.37 0.98 16 41 H 0.08 0.88 6.43 -51.93 -0.33 0.54 16 42 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -34.57 364.72 -9.93 -44.51 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.85 Total: -1.68 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.42 Total: -1.14 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.88 Total: -45.55 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -4.49 Total: -7.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.57 -9.93 -44.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185766994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.135 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds