Wall clock time and date at job start Sat Apr 11 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47435 * 2 1 4 4 C 1.50705 * 109.47466 * 239.99931 * 2 1 3 5 5 N 1.29020 * 124.91632 * 286.77436 * 4 2 1 6 6 C 1.31780 * 117.12701 * 180.22147 * 5 4 2 7 7 C 1.33647 * 114.49740 * 359.47988 * 6 5 4 8 8 S 1.70982 * 124.91471 * 106.45739 * 4 2 1 9 9 N 1.46897 * 109.47104 * 120.00096 * 2 1 3 10 10 C 1.46895 * 110.99897 * 298.63664 * 9 2 1 11 11 C 1.53243 * 109.34081 * 172.74670 * 10 9 2 12 12 N 1.47081 * 108.52249 * 53.82775 * 11 10 9 13 13 C 1.34777 * 120.87910 * 128.79173 * 12 11 10 14 14 O 1.21282 * 119.99927 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00259 * 0.02912 * 13 12 11 16 16 S 1.80994 * 109.47385 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00135 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00367 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00254 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00164 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99724 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47012 * 89.99609 * 21 19 17 23 23 H 1.48494 * 109.47025 * 209.99753 * 21 19 17 24 24 H 1.48496 * 109.47218 * 330.00059 * 21 19 17 25 25 C 1.47076 * 118.23929 * 308.81948 * 12 11 10 26 26 C 1.46904 * 110.99993 * 174.33498 * 9 2 1 27 27 H 1.08998 * 109.47398 * 299.99989 * 1 2 3 28 28 H 1.09004 * 109.46950 * 59.99750 * 1 2 3 29 29 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.07997 * 122.75711 * 179.74609 * 6 5 4 31 31 H 1.07996 * 126.03970 * 180.27063 * 7 6 5 32 32 H 1.09001 * 109.49766 * 292.70225 * 10 9 2 33 33 H 1.09004 * 109.49440 * 52.78983 * 10 9 2 34 34 H 1.09009 * 109.62689 * 294.12339 * 11 10 9 35 35 H 1.08999 * 109.79533 * 173.63745 * 11 10 9 36 36 H 1.09001 * 109.47252 * 299.99738 * 15 13 12 37 37 H 1.09006 * 109.46875 * 59.99494 * 15 13 12 38 38 H 0.97005 * 120.00045 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.63087 * 291.47225 * 25 12 11 40 40 H 1.08999 * 109.63043 * 170.88653 * 25 12 11 41 41 H 1.09001 * 109.49398 * 307.21235 * 26 9 2 42 42 H 1.09008 * 109.49133 * 67.27265 * 26 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.9907 -1.9867 -1.4151 6 6 2.4787 -2.4459 -2.5498 7 6 2.9488 -1.5035 -3.3726 8 16 2.7331 0.0589 -2.5871 9 7 2.0196 -0.6925 1.1994 10 6 1.5754 -0.0078 2.4208 11 6 1.9495 -0.8547 3.6419 12 7 3.3892 -1.1495 3.5828 13 6 4.1882 -0.9107 4.6416 14 8 5.3734 -1.1594 4.5752 15 6 3.6090 -0.3349 5.9080 16 16 4.9238 -0.1325 7.1353 17 6 3.9931 0.5371 8.4732 18 1 2.9308 0.6985 8.3647 19 6 4.6251 0.8563 9.6672 20 7 3.9297 1.3561 10.6667 21 14 6.4624 0.5766 9.8552 22 1 7.1949 1.7961 9.4291 23 1 6.7754 0.2825 11.2767 24 1 6.8776 -0.5710 9.0092 25 6 3.9340 -1.7110 2.3374 26 6 3.4818 -0.8305 1.1676 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.4934 -3.4972 -2.7967 31 1 3.3839 -1.6701 -4.3469 32 1 2.0621 0.9650 2.4900 33 1 0.4942 0.1273 2.3893 34 1 1.3841 -1.7866 3.6284 35 1 1.7257 -0.3040 4.5556 36 1 3.1592 0.6346 5.6939 37 1 2.8480 -1.0101 6.2993 38 1 4.3713 1.5788 11.5013 39 1 3.5595 -2.7252 2.1984 40 1 5.0228 -1.7234 2.3868 41 1 3.7832 -1.2919 0.2272 42 1 3.9420 0.1540 1.2538 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185766994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:37 Heat of formation + Delta-G solvation = 8.449624 kcal Electronic energy + Delta-G solvation = -24763.586405 eV Core-core repulsion = 21189.404191 eV Total energy + Delta-G solvation = -3574.182213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43511 -40.67081 -39.13613 -36.36305 -34.66724 -33.21540 -32.43259 -30.70960 -30.28147 -27.91485 -27.46466 -26.60175 -24.51635 -23.37744 -22.45271 -20.74488 -20.18943 -19.47101 -19.03350 -18.27462 -17.20168 -16.97397 -16.91114 -16.70367 -16.44381 -16.05634 -15.69967 -15.60124 -15.38604 -14.95225 -14.88669 -14.71629 -14.33716 -14.22102 -13.60882 -13.43020 -13.32754 -13.16709 -13.04579 -13.01583 -12.67830 -12.55170 -12.41824 -12.38249 -12.18610 -11.94067 -11.85845 -11.16892 -10.95996 -10.53347 -10.50317 -10.33469 -9.91627 -9.83891 -9.35203 -9.00203 -8.51076 -6.21936 -0.25144 0.38962 0.79749 0.96700 1.31054 1.45598 1.49378 1.53306 1.90741 2.02081 2.25147 2.66609 2.76601 2.87153 3.10311 3.48677 3.77334 3.85793 3.94589 3.99565 4.16633 4.19972 4.29165 4.33414 4.34236 4.40876 4.41475 4.47279 4.58430 4.63776 4.66306 4.78763 4.81499 4.96847 5.02652 5.22364 5.31991 5.40914 5.71515 5.84871 5.92591 6.12184 6.24783 6.85926 6.94270 7.04263 8.61087 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.002237 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.452674 B =12513.604810 C =12978.898592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.040 3.960 5 N -0.472 5.472 6 C 0.018 3.982 7 C -0.250 4.250 8 S 0.124 5.876 9 N -0.522 5.522 10 C 0.041 3.959 11 C 0.106 3.894 12 N -0.607 5.607 13 C 0.535 3.465 14 O -0.565 6.565 15 C -0.104 4.104 16 S -0.179 6.179 17 C -0.526 4.526 18 H 0.065 0.935 19 C 0.046 3.954 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.238 1.238 25 C 0.124 3.876 26 C 0.058 3.942 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.191 0.809 31 H 0.203 0.797 32 H 0.040 0.960 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.277 0.723 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 -3.210 -31.557 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 H 0.086 0.914 4 C -0.239 4.239 5 N -0.186 5.186 6 C -0.132 4.132 7 C -0.389 4.389 8 S 0.378 5.622 9 N -0.248 5.248 10 C -0.087 4.087 11 C -0.016 4.016 12 N -0.342 5.342 13 C 0.322 3.678 14 O -0.443 6.443 15 C -0.255 4.255 16 S 0.048 5.952 17 C -0.673 4.673 18 H 0.083 0.917 19 C -0.159 4.159 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.162 1.162 25 C 0.001 3.999 26 C -0.071 4.071 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.208 0.792 31 H 0.220 0.780 32 H 0.059 0.941 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.011 -3.284 -31.343 32.285 hybrid contribution -0.280 0.127 0.383 0.491 sum -7.291 -3.157 -30.960 31.963 Atomic orbital electron populations 1.21849 0.90627 1.03359 1.03512 1.20272 0.97458 0.93582 0.83993 0.91394 1.27062 1.03010 0.92719 1.01073 1.66229 1.18183 1.12707 1.21515 1.22248 0.99415 1.02688 0.88847 1.27469 1.10260 0.93814 1.07319 1.84081 1.55379 1.11330 1.11431 1.61907 1.10237 1.51289 1.01339 1.22651 1.03116 0.94885 0.88069 1.22125 0.78691 1.01475 0.99296 1.48147 1.09766 1.63434 1.12813 1.20071 0.85949 0.77258 0.84500 1.90670 1.17258 1.53452 1.82958 1.23258 1.02072 1.05339 0.94807 1.84764 1.15936 1.84066 1.10467 1.22430 0.97129 1.48060 0.99709 0.91697 1.25533 1.02833 0.93213 0.94349 1.70007 1.38280 1.42436 1.04606 0.85891 0.80180 0.81044 0.79410 1.18738 1.18338 1.16233 1.21611 0.99264 0.97342 0.81675 1.22291 0.88101 0.98408 0.98330 0.89695 0.90927 0.91921 0.79217 0.78028 0.94145 0.86024 0.89081 0.88131 0.86834 0.86882 0.91374 0.90240 0.90460 0.89999 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.00 71.98 0.65 -0.86 16 2 C 0.16 2.28 2.58 44.17 0.11 2.40 16 3 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 4 C 0.04 0.63 4.46 88.52 0.39 1.03 16 5 N -0.47 -8.74 10.21 -191.44 -1.95 -10.70 16 6 C 0.02 0.26 11.35 83.66 0.95 1.21 16 7 C -0.25 -2.69 11.37 66.78 0.76 -1.93 16 8 S 0.12 1.53 23.18 -56.49 -1.31 0.22 16 9 N -0.52 -9.09 4.47 -874.37 -3.91 -13.00 16 10 C 0.04 0.63 5.42 86.39 0.47 1.10 16 11 C 0.11 2.06 6.50 86.35 0.56 2.62 16 12 N -0.61 -16.40 3.01 -817.92 -2.46 -18.86 16 13 C 0.53 19.37 7.73 87.66 0.68 20.05 16 14 O -0.56 -25.09 15.31 -3.04 -0.05 -25.14 16 15 C -0.10 -3.97 4.52 71.23 0.32 -3.65 16 16 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 17 C -0.53 -30.46 10.04 67.96 0.68 -29.78 16 18 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 19 C 0.05 2.71 5.50 84.86 0.47 3.18 16 20 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 21 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 22 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 25 C 0.12 3.07 6.60 86.35 0.57 3.64 16 26 C 0.06 1.19 5.38 86.39 0.46 1.65 16 27 H 0.08 0.70 6.28 -2.39 -0.02 0.68 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.12 1.27 5.99 -2.38 -0.01 1.26 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.10 1.87 6.02 -2.39 -0.01 1.85 16 36 H 0.11 3.93 7.66 -2.39 -0.02 3.91 16 37 H 0.11 3.97 8.00 -2.39 -0.02 3.95 16 38 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 2.21 7.06 -2.39 -0.02 2.20 16 41 H 0.08 1.70 6.43 -2.39 -0.02 1.68 16 42 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -74.95 364.72 -0.45 -75.41 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.99 Total: 9.72 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 7.08 Total: 0.65 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -8.03 Total: -97.75 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -2.36 Total: -9.94 kcal Total: -74.95 -0.45 -75.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185766994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.857 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds