Wall clock time and date at job start Sat Apr 11 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34715 * 116.99648 * 2 1 4 4 O 1.21467 * 119.99874 * 359.97438 * 3 2 1 5 5 C 1.47726 * 120.00177 * 180.02562 * 3 2 1 6 6 C 1.39653 * 120.14716 * 359.97438 * 5 3 2 7 7 C 1.37921 * 119.84731 * 179.97438 * 6 5 3 8 8 C 1.50702 * 119.92680 * 179.97438 * 7 6 5 9 9 C 1.38390 * 120.14953 * 0.25024 * 7 6 5 10 10 C 1.50703 * 119.84832 * 179.74801 * 9 7 6 11 11 C 1.38347 * 120.30208 * 359.49351 * 9 7 6 12 12 S 1.76198 * 119.92293 * 180.25527 * 11 9 7 13 13 O 1.42098 * 106.40013 * 176.66312 * 12 11 9 14 14 O 1.42100 * 106.40401 * 309.58108 * 12 11 9 15 15 N 1.65599 * 107.22174 * 63.12201 * 12 11 9 16 16 C 1.46501 * 119.99607 * 65.53045 * 15 12 11 17 17 H 1.08999 * 109.47573 * 334.92352 * 16 15 12 18 18 C 1.53008 * 109.46837 * 94.91977 * 16 15 12 19 19 C 1.50700 * 109.47000 * 214.91535 * 16 15 12 20 20 H 1.08003 * 120.00412 * 0.02562 * 19 16 15 21 21 C 1.37880 * 119.99830 * 180.02562 * 19 16 15 22 22 N 1.31509 * 120.00078 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 119.99827 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47014 * 90.00476 * 23 21 19 25 25 H 1.48502 * 109.47022 * 210.00301 * 23 21 19 26 26 H 1.48497 * 109.47303 * 330.00332 * 23 21 19 27 27 C 1.37962 * 120.14820 * 0.50937 * 11 9 7 28 28 H 1.09004 * 109.47133 * 60.00940 * 1 2 3 29 29 H 1.09003 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47170 * 300.00239 * 1 2 3 31 31 H 1.08000 * 120.07760 * 359.95810 * 6 5 3 32 32 H 1.09002 * 109.47126 * 89.99309 * 8 7 6 33 33 H 1.09007 * 109.46549 * 329.99981 * 8 7 6 34 34 H 1.08996 * 109.47401 * 209.99920 * 8 7 6 35 35 H 1.08990 * 109.47238 * 95.52585 * 10 9 7 36 36 H 1.08997 * 109.46942 * 215.52973 * 10 9 7 37 37 H 1.09001 * 109.47001 * 335.52561 * 10 9 7 38 38 H 0.96995 * 119.99846 * 245.54075 * 15 12 11 39 39 H 1.08997 * 109.46680 * 179.97438 * 18 16 15 40 40 H 1.08992 * 109.46837 * 299.99878 * 18 16 15 41 41 H 1.08999 * 109.46733 * 59.99860 * 18 16 15 42 42 H 0.97000 * 119.99774 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.07422 * 179.76636 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2778 -0.0006 6 6 4.3025 0.1086 -0.0006 7 6 5.6794 0.1881 -0.0016 8 6 6.5053 -1.0724 -0.0011 9 6 6.3043 1.4229 0.0025 10 6 7.8093 1.5018 0.0071 11 6 5.5538 2.5851 -0.0028 12 16 6.3599 4.1519 -0.0042 13 8 5.3336 5.1310 -0.0893 14 8 7.3125 4.1140 1.0495 15 7 7.2245 4.2571 -1.4127 16 6 6.5259 4.2947 -2.6999 17 1 5.5525 3.8148 -2.5992 18 6 6.3349 5.7494 -3.1341 19 6 7.3414 3.5643 -3.7355 20 1 8.2855 3.1164 -3.4621 21 6 6.8824 3.4677 -5.0320 22 7 5.7331 4.0134 -5.3650 23 14 7.8929 2.5616 -6.3155 24 1 7.5011 1.1293 -6.3334 25 1 7.6457 3.1592 -7.6524 26 1 9.3352 2.6761 -5.9813 27 6 4.1757 2.5200 -0.0017 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.8160 -0.8556 0.0005 32 1 6.7035 -1.3774 -1.0286 33 1 5.9602 -1.8636 0.5140 34 1 7.4492 -0.8882 0.5119 35 1 8.1699 1.6216 -1.0145 36 1 8.1265 2.3549 0.6068 37 1 8.2198 0.5860 0.4323 38 1 8.1934 4.2938 -1.3854 39 1 5.8156 5.7773 -4.0920 40 1 5.7452 6.2776 -2.3851 41 1 7.3084 6.2292 -3.2349 42 1 5.4104 3.9457 -6.2772 43 1 3.5910 3.4281 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267042167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:08 Heat of formation + Delta-G solvation = -139.150347 kcal Electronic energy + Delta-G solvation = -28679.612100 eV Core-core repulsion = 24623.983850 eV Total energy + Delta-G solvation = -4055.628251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64610 -39.29311 -36.88115 -36.48652 -35.52422 -35.38420 -33.54142 -32.57160 -32.21329 -28.79693 -28.27136 -27.36841 -26.68162 -25.24579 -23.00693 -22.87094 -21.00457 -20.25405 -19.02568 -18.05866 -17.45305 -17.15260 -16.42717 -16.33678 -15.91341 -15.75174 -15.44485 -15.15477 -14.55620 -14.35471 -13.83379 -13.60856 -13.42324 -13.34594 -12.98750 -12.84004 -12.64809 -12.32782 -12.24458 -12.22990 -11.94887 -11.87715 -11.72743 -11.66383 -11.43949 -11.22089 -11.15683 -11.02353 -10.91514 -10.64567 -10.60882 -10.38634 -10.27870 -10.15331 -9.28095 -9.23011 -8.70418 -8.65857 -8.35563 -6.16409 -4.25564 0.55130 0.89554 1.07232 2.39513 2.57307 3.20322 3.28193 3.29530 3.44689 3.66700 4.18543 4.30500 4.51715 4.53637 4.78791 4.91449 4.96465 4.98543 5.04906 5.09860 5.15315 5.23048 5.38120 5.45961 5.57842 5.62707 5.69823 5.80433 5.91648 5.94848 6.12184 6.22127 6.24959 6.30062 6.37583 6.73459 6.80727 7.05206 7.08230 7.54611 7.66924 7.67425 7.77136 8.01157 8.23285 8.77263 9.41028 10.89122 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.004625 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.811053 B = 6052.936953 C = 6614.878137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.512 3.488 4 O -0.500 6.500 5 C -0.156 4.156 6 C -0.011 4.011 7 C -0.126 4.126 8 C -0.115 4.115 9 C 0.067 3.933 10 C -0.183 4.183 11 C -0.678 4.678 12 S 2.692 3.308 13 O -0.959 6.959 14 O -0.977 6.977 15 N -1.096 6.096 16 C 0.275 3.725 17 H 0.041 0.959 18 C -0.158 4.158 19 C -0.526 4.526 20 H 0.065 0.935 21 C 0.066 3.934 22 N -0.884 5.884 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.046 3.954 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.410 0.590 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -10.866 10.299 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.357 3.643 4 O -0.388 6.388 5 C -0.158 4.158 6 C -0.030 4.030 7 C -0.126 4.126 8 C -0.171 4.171 9 C 0.066 3.934 10 C -0.238 4.238 11 C -0.762 4.762 12 S 2.779 3.221 13 O -0.949 6.949 14 O -0.967 6.967 15 N -0.858 5.858 16 C 0.171 3.829 17 H 0.058 0.942 18 C -0.218 4.218 19 C -0.566 4.566 20 H 0.083 0.917 21 C -0.138 4.138 22 N -0.522 5.522 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 C 0.027 3.973 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.244 0.756 39 H 0.110 0.890 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.950 -9.946 10.783 14.963 hybrid contribution 0.245 -1.208 -1.221 1.735 sum -2.705 -11.155 9.562 14.939 Atomic orbital electron populations 1.23281 0.75957 1.03641 1.02812 1.86519 1.23600 1.32691 1.84614 1.21096 0.88902 0.81494 0.72779 1.90860 1.66591 1.35880 1.45500 1.19008 0.89046 0.94962 1.12748 1.21490 0.93188 0.97893 0.90405 1.19813 0.93685 0.95289 1.03851 1.20869 0.99503 0.93665 1.03074 1.19638 0.96139 0.91240 0.86376 1.21806 0.90115 1.06290 1.05627 1.31027 1.04229 1.22295 1.18700 1.01938 0.73584 0.73600 0.72975 1.93570 1.59134 1.55621 1.86530 1.93489 1.61208 1.87126 1.54868 1.55552 1.18363 1.89705 1.22194 1.18548 0.92020 0.94217 0.78086 0.94160 1.22235 0.99841 0.96962 1.02762 1.21246 1.06514 1.35144 0.93693 0.91714 1.24917 0.95089 0.95417 0.98359 1.69881 1.19263 1.43620 1.19398 0.86500 0.80417 0.79690 0.80796 1.20688 1.21103 1.19769 1.21003 0.92473 0.97904 0.85962 0.91625 0.88030 0.91820 0.84046 0.90503 0.91386 0.90622 0.87773 0.87639 0.89480 0.75590 0.88979 0.95513 0.94819 0.92520 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.58 9.82 -40.53 -0.40 -4.98 16 3 C 0.51 8.11 7.90 34.61 0.27 8.39 16 4 O -0.50 -9.15 16.14 -19.24 -0.31 -9.46 16 5 C -0.16 -2.50 5.87 -104.98 -0.62 -3.11 16 6 C -0.01 -0.15 9.27 -39.17 -0.36 -0.52 16 7 C -0.13 -1.69 5.87 -104.68 -0.61 -2.31 16 8 C -0.11 -1.11 9.59 36.01 0.35 -0.77 16 9 C 0.07 1.04 5.88 -104.52 -0.61 0.43 16 10 C -0.18 -2.43 8.84 36.01 0.32 -2.11 16 11 C -0.68 -11.98 5.76 -39.64 -0.23 -12.21 16 12 S 2.69 50.68 4.95 -107.50 -0.53 50.14 16 13 O -0.96 -20.76 16.21 -57.17 -0.93 -21.68 16 14 O -0.98 -18.33 15.50 -57.17 -0.89 -19.22 16 15 N -1.10 -21.12 5.18 -5.88 -0.03 -21.15 16 16 C 0.28 6.45 2.76 -69.08 -0.19 6.26 16 17 H 0.04 1.03 7.88 -51.93 -0.41 0.62 16 18 C -0.16 -3.78 9.29 37.16 0.35 -3.43 16 19 C -0.53 -13.02 8.76 -34.44 -0.30 -13.32 16 20 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 21 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 22 N -0.88 -23.90 11.32 55.43 0.63 -23.28 16 23 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 C 0.05 0.82 9.09 -39.17 -0.36 0.47 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.14 1.50 7.61 -52.49 -0.40 1.10 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.53 8.08 -51.92 -0.42 0.11 16 34 H 0.08 0.64 5.86 -51.93 -0.30 0.34 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.11 1.48 5.16 -51.93 -0.27 1.21 16 37 H 0.09 0.89 5.72 -51.93 -0.30 0.59 16 38 H 0.41 6.92 8.83 -34.47 -0.30 6.62 16 39 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 40 H 0.03 0.61 7.63 -51.93 -0.40 0.21 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.16 2.88 6.92 -52.49 -0.36 2.52 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -32.06 369.46 -8.50 -40.55 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.56 Total: 7.89 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -1.03 Total: -19.24 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.60 Total: -44.43 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -2.52 Total: -55.35 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 50.68 SS G_CDS: -0.53 Total: 50.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.06 -8.50 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267042167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.597 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds